genome.fa.s133.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold133
Parameters: 2 7 7 80 10 50 1000
Length:  2564099

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  5  of  17  ( 1989 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
515822--515887	19	3.4	18	79	10	60	43	3	0	53	1.16
516414--516466	17	2.9	18	80	8	63	45	1	0	52	1.11
518170--518213	23	2.0	22	86	4	61	47	0	0	52	1.00
518699--518762	21	3.0	20	72	12	65	50	1	0	48	1.10
518893--518936	17	2.5	17	85	3	52	47	4	0	47	1.22
518996--519037	22	1.9	22	85	0	57	40	2	0	57	1.12
521316--521356	20	2.0	20	85	4	55	31	0	0	68	0.90
521307--521360	21	2.5	22	79	11	58	31	0	0	68	0.90
521615--521647	2	16.5	2	100	0	66	51	0	48	0	1.00
521885--521928	20	2.4	17	88	11	61	45	0	0	54	0.99
523808--523834	2	13.5	2	100	0	54	51	0	0	48	1.00
524700--524753	23	2.3	23	77	3	63	53	0	0	46	1.00
534627--534672	22	2.2	21	84	7	58	36	17	4	41	1.69
534729--534760	16	2.0	16	93	0	55	65	15	0	18	1.27
536130--536186	27	2.1	27	86	0	78	40	3	19	36	1.69
536548--536671	44	2.8	44	100	0	248	22	20	16	40	1.91
540888--540913	12	2.2	12	100	0	52	15	34	26	23	1.94
540916--540966	12	3.9	12	78	16	57	43	5	11	39	1.66
540922--540978	27	2.1	27	90	0	87	40	5	19	35	1.74
541526--541555	14	2.1	14	100	0	60	6	36	13	43	1.70
543114--543168	6	9.2	6	91	0	83	36	0	0	63	0.95
544551--544590	17	2.4	16	84	8	53	27	0	5	67	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
544572--544643	18	3.8	18	70	18	56	40	4	0	55	1.19
544722--544988	143	1.9	142	78	6	297	47	2	6	43	1.43
545192--545230	16	2.6	16	88	8	55	58	0	0	41	0.98
545242--545286	15	2.8	16	80	10	56	51	0	0	48	1.00
547994--548155	63	2.6	63	93	2	263	32	14	15	37	1.87
548516--548581	35	1.9	34	90	3	105	34	15	24	25	1.94
549318--549346	2	14.5	2	100	0	58	51	0	0	48	1.00
549879--549913	18	1.9	18	94	0	61	25	2	14	57	1.51
550259--550324	20	3.7	18	73	26	61	43	1	0	54	1.09
550252--550328	32	2.3	34	82	13	97	44	1	0	54	1.08
555222--555258	16	2.2	17	90	4	58	43	0	0	56	0.99
556418--556493	29	2.6	29	83	10	84	56	3	0	39	1.18
556613--556834	110	2.0	111	92	2	376	23	25	22	28	1.99
556987--557015	2	14.5	2	100	0	58	51	48	0	0	1.00
557015--557045	2	15.5	2	100	0	62	51	0	0	48	1.00
557069--557102	18	1.9	17	88	5	50	61	0	0	38	0.96
558773--559146	72	5.2	72	87	1	543	44	19	6	29	1.77
559456--559496	15	2.7	15	84	0	64	14	9	51	24	1.72
564368--564412	15	3.1	14	84	9	54	42	26	0	31	1.56
564534--564602	31	2.4	30	83	9	81	69	2	1	26	1.11
565241--565277	2	18.5	2	100	0	74	48	0	0	51	1.00
565436--565480	17	2.5	19	79	17	60	60	2	2	35	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
565436--565482	18	2.7	17	83	12	60	57	2	2	38	1.23
565436--565488	17	3.1	17	78	13	54	56	1	1	39	1.21
565813--565865	3	17.7	3	100	0	106	32	0	0	67	0.91
576794--576824	3	10.3	3	100	0	62	67	0	0	32	0.91
576839--576923	8	10.8	8	69	10	59	61	2	1	35	1.17
577044--577090	14	3.4	14	74	11	51	40	0	0	59	0.97
577068--577109	21	2.0	21	86	9	59	38	0	0	61	0.96
577046--577150	50	2.1	49	83	11	126	43	1	0	54	1.11
585543--585585	18	2.3	18	80	11	52	53	0	0	46	1.00
589237--589283	20	2.3	20	79	10	51	44	0	0	55	0.99
589234--589274	20	2.0	21	85	9	57	48	0	0	51	1.00
589288--589326	12	3.2	12	82	13	53	41	2	0	56	1.13
589611--589688	40	2.0	40	85	10	106	41	0	1	57	1.07
589696--589736	19	2.2	18	86	8	55	17	2	0	80	0.82
590406--590443	16	2.4	16	87	12	60	39	0	2	57	1.12
590406--590451	16	2.9	15	81	12	56	39	0	4	56	1.19
590481--590515	18	1.9	18	88	0	52	34	0	5	60	1.21
590695--590741	15	3.1	15	78	9	51	40	0	0	59	0.97
590753--590796	18	2.4	18	85	7	63	63	0	0	36	0.95
590757--590812	17	3.3	17	77	20	55	58	0	0	41	0.98
591595--591637	21	2.1	20	82	4	50	48	2	4	44	1.36
592669--592707	21	1.9	20	84	5	51	20	5	0	74	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
594041--594065	12	2.1	12	100	0	50	52	0	24	24	1.48
594833--594864	3	10.7	3	93	0	55	31	3	34	31	1.73
598047--598079	15	2.2	15	94	0	57	15	6	0	78	0.93
598541--598578	18	2.1	19	85	14	53	36	0	0	63	0.95
599226--599269	20	2.3	19	84	4	52	36	2	2	59	1.23
599298--599353	21	2.8	21	84	7	73	35	5	0	58	1.21
599607--599643	19	2.0	18	94	5	65	45	0	0	54	1.00
599607--599648	19	2.3	18	88	8	59	42	0	0	57	0.99
600104--600150	20	2.3	21	82	7	53	48	2	2	46	1.25
600980--601038	3	18.7	3	74	22	50	30	3	0	66	1.08
600981--601035	19	2.9	19	82	15	69	29	3	0	67	1.08
601467--601493	2	13.5	2	100	0	54	48	0	0	51	1.00
602131--602175	23	2.0	23	90	0	72	28	2	0	68	1.01
602216--602274	23	2.5	22	78	10	64	25	0	5	69	1.09
603193--603252	26	2.3	27	80	11	72	46	1	3	48	1.28
603385--603430	13	3.5	13	80	11	58	19	0	2	78	0.86
603384--603445	26	2.4	26	76	10	72	27	0	1	70	0.96
603525--603575	6	8.0	6	77	18	50	31	0	1	66	1.03
603525--603573	13	3.7	13	81	5	53	28	0	2	69	1.00
603791--603825	18	1.9	18	88	11	54	22	0	2	74	0.95
605168--605202	10	3.4	10	92	7	61	71	0	0	28	0.86
605493--605530	20	1.9	20	88	0	58	36	0	5	57	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
605512--605545	18	1.9	17	88	5	50	32	0	5	61	1.20
606906--606959	20	2.7	20	80	11	65	38	0	0	61	0.96
606982--607015	15	2.3	15	89	0	50	41	0	2	55	1.15
607406--607441	18	1.9	18	88	5	54	44	13	0	41	1.44
607869--607931	24	2.6	24	82	12	67	20	6	0	73	1.05
607884--607931	20	2.6	18	78	15	53	18	6	0	75	1.01
607895--607943	20	2.5	19	80	9	53	20	4	4	71	1.19
608212--608248	19	2.0	18	94	5	65	48	0	0	51	1.00
608209--608267	12	4.3	13	73	24	50	38	0	0	61	0.96
608207--608269	11	5.8	12	70	22	50	41	0	0	58	0.98
608302--608382	20	3.9	22	77	9	73	54	3	1	40	1.26
608329--608382	21	2.6	21	85	11	67	57	1	0	40	1.09
608922--608964	21	2.0	21	86	0	59	62	4	0	32	1.15
613739--614082	4	86.0	4	84	0	301	50	12	0	37	1.41
613736--614082	14	24.5	14	80	6	333	49	12	0	37	1.41
613736--614082	20	18.0	20	80	12	356	49	12	0	37	1.41
613736--614075	36	9.5	36	84	8	408	50	12	0	37	1.41
616218--616278	29	2.1	29	87	6	88	52	1	0	45	1.10
616590--616628	19	2.0	20	90	5	62	25	0	5	69	1.09
616880--616907	2	14.0	2	100	0	56	50	0	0	50	1.00
616907--616946	2	20.0	2	100	0	80	50	0	50	0	1.00
617597--617649	20	2.6	21	82	11	65	39	13	18	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
621263--621297	18	2.0	18	88	5	54	62	5	0	31	1.18
621557--621609	27	1.9	27	84	3	70	22	1	9	66	1.31
622992--623024	15	2.1	16	88	5	50	54	0	0	45	0.99
624178--624210	15	2.1	16	88	5	50	33	9	0	57	1.30
626566--626643	20	3.9	19	76	6	75	34	11	14	39	1.82
627553--627606	22	2.5	22	96	3	101	18	11	9	61	1.55
633759--633805	21	2.2	21	85	11	60	76	8	8	6	1.15
635120--636301	28	40.9	28	84	7	1274	27	31	18	22	1.97
635120--636255	145	7.9	141	85	6	1353	27	32	18	21	1.97
636403--636577	47	3.7	47	81	7	187	19	27	19	33	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17