genome.fa.s133.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold133
Parameters: 2 7 7 80 10 50 1000
Length:  2564099

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  3  of  17  ( 1989 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
256778--256825	14	3.4	14	77	8	53	41	0	0	58	0.98
256741--256858	34	3.5	34	78	11	127	40	0	0	59	0.97
256782--256854	19	4.1	19	76	16	75	39	0	0	60	0.97
257267--257319	23	2.3	23	84	9	65	49	0	1	49	1.12
257828--257870	16	2.6	17	75	17	54	53	25	0	20	1.46
258658--258722	31	2.1	31	82	0	76	36	29	15	18	1.91
258740--258786	17	2.8	17	87	6	60	59	17	6	17	1.57
259453--259478	5	5.2	5	100	0	52	57	0	0	42	0.98
259832--259877	15	3.1	15	76	14	51	54	2	0	43	1.12
260290--260327	20	1.9	19	85	15	51	23	5	18	52	1.65
262575--262687	30	3.8	29	77	13	90	43	12	0	43	1.48
262709--262774	29	2.3	29	79	10	73	51	9	7	31	1.62
263394--263440	24	1.9	25	83	12	62	59	0	2	38	1.09
263523--263587	34	1.9	34	81	12	80	46	0	0	53	1.00
263563--263607	21	2.2	20	88	4	63	44	0	0	55	0.99
263563--263607	20	2.2	21	84	11	58	44	0	0	55	0.99
269016--269062	25	1.9	24	83	12	60	38	2	0	59	1.09
270402--270426	4	6.2	4	100	0	50	0	24	0	76	0.80
270687--270734	15	3.3	15	74	25	50	37	0	0	62	0.95
270705--270825	49	2.5	49	80	12	126	44	0	0	55	0.99
270748--270823	32	2.3	33	84	4	91	48	0	0	51	1.00
271651--271710	8	7.8	8	72	7	52	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
271651--271715	19	3.4	19	76	16	71	60	0	0	40	0.97
271648--271715	33	2.1	33	83	10	86	58	0	0	41	0.98
272952--273012	17	3.7	16	74	10	52	40	0	3	55	1.16
274282--274328	24	2.0	24	83	4	60	46	4	2	46	1.34
279553--279587	17	2.0	17	88	5	52	71	2	0	25	1.00
281715--281797	42	1.9	43	81	13	100	54	0	0	45	0.99
282747--282877	20	6.5	20	64	22	51	38	0	0	61	1.02
282738--282826	18	5.5	17	68	26	68	38	0	0	61	0.96
283175--283207	14	2.3	15	94	5	59	54	6	0	39	1.25
283694--283739	22	2.1	22	95	0	83	30	6	32	30	1.83
284322--284363	11	3.6	11	77	22	50	9	11	16	61	1.55
284323--284372	24	2.1	24	100	0	100	8	14	16	62	1.54
291751--291800	23	2.3	22	86	10	68	80	0	0	20	0.72
291758--291824	11	5.8	11	78	15	57	76	0	4	19	0.96
291751--291802	8	6.1	8	75	20	52	80	0	0	19	0.71
291750--291826	35	2.2	34	86	11	104	76	0	3	19	0.94
293575--293607	14	2.3	15	89	5	50	12	6	3	78	1.04
293922--293962	21	2.0	21	90	9	66	58	0	0	41	0.98
294256--294318	22	3.0	21	72	19	58	38	4	1	55	1.31
294926--295024	20	5.3	19	69	24	68	40	1	1	57	1.12
294915--295021	38	2.9	38	75	15	107	38	1	0	58	1.15
295058--295128	23	3.2	22	81	13	74	29	2	0	67	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
296026--296086	23	2.7	23	84	2	70	52	8	0	39	1.31
296248--296297	21	2.4	21	76	3	57	54	0	0	46	1.00
296423--296538	16	7.2	16	73	1	90	11	11	30	47	1.74
296414--296525	48	2.3	48	76	1	125	10	10	32	46	1.73
297578--297647	16	4.4	16	78	7	79	25	11	15	47	1.79
297639--297729	16	6.0	16	81	8	111	45	3	0	51	1.17
298339--298407	34	2.0	35	85	2	95	46	11	13	28	1.78
302338--302394	23	2.5	23	88	8	82	57	3	0	38	1.16
302346--302394	22	2.2	21	86	13	64	59	4	0	36	1.17
302706--302787	40	2.1	39	81	9	94	51	0	1	47	1.08
303151--303176	2	13.0	2	100	0	52	50	0	0	50	1.00
303193--303306	33	3.7	31	68	22	96	44	0	0	54	1.06
306491--306681	98	2.0	96	86	4	267	41	11	22	24	1.86
312260--312308	18	2.6	18	75	18	55	30	0	0	69	0.89
312264--312328	30	2.1	31	82	5	78	33	1	0	64	1.03
313252--313335	21	4.3	20	75	19	72	55	0	7	36	1.27
314826--314891	33	2.0	33	100	0	132	42	9	12	36	1.74
316577--316638	21	3.0	21	88	2	90	38	17	14	29	1.89
316682--316746	32	2.0	32	93	0	112	33	20	12	33	1.89
316690--316746	19	3.3	19	65	27	54	33	19	12	35	1.89
317420--318125	48	15.0	49	78	11	618	30	18	26	24	1.98
317420--317946	101	5.4	98	82	8	560	31	18	26	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
317670--318033	135	2.7	136	89	2	514	28	20	26	25	1.99
317860--318120	87	3.0	87	93	0	432	28	20	24	26	1.99
317908--318072	39	4.0	39	76	13	168	26	20	25	27	1.99
318188--318346	33	4.8	33	85	1	201	37	14	29	18	1.91
318183--318374	67	3.0	65	79	8	196	35	13	30	19	1.91
318321--318456	27	5.1	27	83	5	159	29	13	33	24	1.93
318336--318456	52	2.3	55	81	8	151	31	11	32	24	1.91
318459--318537	34	2.3	34	84	0	104	36	10	31	21	1.87
318473--318581	34	3.3	34	79	10	127	35	11	30	22	1.90
318523--318732	31	6.9	30	82	7	219	29	16	29	24	1.97
318483--318732	62	4.0	62	80	8	224	30	15	30	23	1.95
319967--320036	32	2.2	31	90	10	106	7	7	5	80	1.04
319964--319993	12	2.5	12	88	0	51	0	0	10	90	0.47
326962--327016	20	2.8	20	88	5	76	38	12	16	32	1.86
327504--327541	19	2.1	19	85	5	51	26	2	2	68	1.16
327494--327548	26	2.1	26	83	12	69	32	1	1	63	1.15
328729--328807	11	7.5	11	76	16	69	45	0	1	53	1.08
328754--328799	10	4.3	10	79	15	56	47	0	0	52	1.00
328742--328808	23	2.8	23	86	8	82	47	0	0	52	1.00
328754--328807	19	3.1	18	76	12	51	46	0	0	53	1.00
328768--328817	23	2.2	23	82	7	57	52	0	0	48	1.00
329180--329211	12	2.6	13	85	14	50	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
331492--331520	3	9.7	3	100	0	58	31	0	0	68	0.89
333769--333816	18	2.7	18	84	12	55	77	0	16	6	0.97
335237--335283	21	2.2	20	85	7	58	63	2	0	34	1.06
335417--335457	3	13.7	3	100	0	82	31	0	0	68	0.90
340938--340969	14	2.1	16	88	11	50	56	0	0	43	0.99
342073--342221	73	2.0	74	81	11	173	40	8	4	46	1.56
343017--343065	15	3.3	15	86	10	66	46	0	0	53	1.00
343060--343084	13	1.9	13	100	0	50	40	0	0	60	0.97
344730--344774	16	2.8	15	80	12	54	75	0	0	24	0.80
345276--345323	21	2.3	21	78	7	53	37	0	2	60	1.09
345565--345605	16	2.5	16	88	4	55	58	0	0	41	0.98
345644--345687	9	4.8	9	81	15	54	65	0	0	34	0.93
345688--345725	20	1.9	19	89	5	58	42	0	0	57	0.98
345697--345753	25	2.3	27	79	14	68	49	0	0	50	1.00
349963--350154	59	3.3	59	86	2	217	16	17	33	33	1.92
350053--350316	118	2.2	120	84	4	338	17	20	31	31	1.95
350053--350316	59	4.4	59	83	4	282	17	20	31	31	1.95
356172--356251	40	2.0	40	85	4	108	21	30	23	25	1.99
356757--356804	18	2.7	18	74	25	57	37	0	0	62	0.95
356758--356840	22	4.3	20	70	23	70	34	0	0	65	0.93
357379--357433	27	2.0	29	89	7	87	50	0	3	45	1.19
357481--357524	18	2.4	19	81	14	56	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
358340--358413	6	12.2	6	76	18	57	50	0	0	50	1.00
360632--360675	17	2.4	18	81	11	54	54	0	0	45	0.99
361558--361633	37	2.1	36	87	7	109	47	0	5	47	1.24
362053--362156	51	2.0	50	81	7	120	47	0	0	51	1.07
362322--362362	21	2.0	19	86	13	55	58	0	0	41	0.98
362349--362400	22	2.3	23	74	9	54	53	0	0	46	1.00
362393--362447	24	2.3	25	75	12	62	61	0	0	38	0.96
364507--364540	14	2.5	14	90	4	52	41	0	0	58	0.98
364490--364547	30	2.0	29	86	10	82	43	0	0	56	0.99
364462--364536	24	3.2	23	77	17	82	41	1	0	57	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17