genome.fa.s133.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold133
Parameters: 2 7 7 80 10 50 1000
Length:  2564099

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  2  of  17  ( 1989 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109871--109895	13	1.9	13	100	0	50	36	8	8	48	1.62
110359--110431	19	4.2	19	66	20	52	41	4	0	54	1.19
110402--110474	19	3.6	19	70	22	58	38	4	1	56	1.27
110618--110672	26	2.1	27	82	3	67	49	3	5	41	1.43
111400--111430	2	15.5	2	100	0	62	48	0	0	51	1.00
113906--113930	6	4.2	6	100	0	50	68	0	0	32	0.90
116055--116107	21	2.6	20	85	8	63	41	0	9	49	1.35
119639--119667	2	14.5	2	100	0	58	51	0	0	48	1.00
119932--119972	20	2.0	20	95	0	73	39	17	0	43	1.49
121250--121275	2	13.0	2	100	0	52	50	0	0	50	1.00
122381--122405	2	12.5	2	100	0	50	52	0	48	0	1.00
125040--125112	36	2.0	36	100	0	146	27	19	21	31	1.97
131365--131403	16	2.4	16	91	4	60	46	0	0	53	1.00
131737--131797	24	2.4	25	72	5	61	52	0	0	47	1.00
132724--132808	32	2.6	32	83	5	91	55	0	2	42	1.12
133536--133577	16	2.9	14	86	13	66	30	0	0	69	0.89
133529--133631	20	5.1	20	76	15	95	34	0	1	62	1.13
133536--133631	10	9.4	10	76	15	72	35	1	1	62	1.09
134039--134088	26	2.0	26	84	7	68	48	2	0	50	1.12
134267--134385	56	2.2	52	75	16	116	48	1	1	47	1.21
135034--135082	17	2.8	17	78	3	53	65	2	2	30	1.15
135559--135626	18	3.7	19	74	21	65	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
136190--136215	2	13.0	2	100	0	52	50	0	0	50	1.00
147088--147255	83	2.0	85	87	4	243	40	17	8	33	1.80
149095--149126	2	16.0	2	100	0	64	50	0	0	50	1.00
149445--149492	20	2.4	18	80	16	51	43	0	0	56	0.99
149559--149624	21	3.3	19	73	21	55	40	7	1	50	1.40
149753--149816	15	4.1	17	75	15	57	34	0	1	64	1.03
149767--149831	26	2.4	28	80	12	73	35	0	0	64	0.94
149790--149847	18	3.4	18	81	11	77	39	0	0	60	0.97
149747--149847	44	2.3	45	77	13	104	39	0	0	59	1.04
150139--150182	22	2.0	21	87	12	63	56	0	2	40	1.11
151357--151397	21	2.0	21	85	4	57	70	2	0	26	0.99
151823--151866	2	22.5	2	95	4	81	47	0	0	52	1.00
156027--156065	20	1.9	21	85	15	55	51	0	2	46	1.14
157959--157997	2	20.0	2	94	5	71	51	0	0	48	1.00
160954--160988	3	11.7	3	93	0	61	28	0	2	68	1.04
161834--161877	2	22.0	2	100	0	88	50	0	0	50	1.00
163384--163441	31	1.9	30	89	3	89	53	0	1	44	1.10
164152--164193	14	2.9	15	86	10	61	47	0	7	45	1.30
165189--165213	2	12.5	2	100	0	50	52	0	0	48	1.00
165950--165989	19	2.1	19	86	9	55	72	0	2	25	0.97
166799--166831	3	11.0	3	100	0	66	33	0	0	66	0.92
167117--167176	23	2.6	24	82	12	72	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
167145--167209	9	7.1	9	77	7	60	36	1	1	60	1.16
168833--168872	2	20.0	2	89	0	62	47	2	2	47	1.29
169788--169834	13	3.4	14	77	11	53	53	6	0	40	1.27
169824--169866	23	2.0	23	86	9	63	58	4	0	37	1.19
170163--170188	2	13.0	2	100	0	52	50	0	0	50	1.00
171658--171693	2	18.0	2	100	0	72	50	0	0	50	1.00
172154--172201	25	1.9	25	83	8	62	43	0	0	56	0.99
172166--172241	31	2.4	30	85	12	100	50	0	0	50	1.00
177653--177722	25	2.8	25	72	8	61	38	0	4	57	1.19
178397--178461	32	2.0	34	84	6	89	50	3	0	46	1.17
178441--178525	2	43.5	2	82	13	106	49	2	0	48	1.14
178439--178542	20	5.4	18	81	10	84	50	1	0	47	1.12
188246--188391	75	1.9	76	86	4	206	29	16	17	36	1.92
188468--188579	48	2.3	50	81	7	131	46	0	0	53	1.00
188536--188569	15	2.1	17	89	10	54	50	0	0	50	1.00
189840--189949	27	3.8	29	77	15	111	49	2	0	48	1.15
189819--189874	19	2.9	19	76	10	69	51	1	1	44	1.22
189859--189907	18	3.0	17	72	27	52	46	0	0	53	1.00
189850--189900	15	3.4	15	81	5	59	49	0	0	50	1.00
189826--189914	11	8.5	11	69	19	57	49	1	1	48	1.16
190259--190305	24	2.0	24	83	8	60	55	0	0	44	0.99
190271--190317	25	2.0	23	83	8	58	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
190282--190334	15	3.6	14	80	10	61	54	0	0	45	0.99
197297--197375	32	2.5	32	89	2	115	31	21	12	34	1.91
202372--202453	32	2.5	33	76	4	85	25	13	29	31	1.94
204917--204973	13	3.9	13	72	24	51	33	14	19	33	1.91
204916--205000	32	2.7	32	94	0	143	30	12	20	36	1.90
205024--205048	13	1.9	13	100	0	50	32	16	16	36	1.90
205057--205185	52	2.5	52	93	0	213	34	17	18	29	1.94
208805--208845	18	2.2	19	86	8	57	14	21	0	63	1.30
212178--212216	19	2.1	19	90	0	60	53	7	7	30	1.57
217491--217554	30	2.3	29	78	10	71	57	10	3	28	1.48
218471--218572	18	6.0	17	64	23	54	62	0	0	37	0.95
218477--218572	28	3.4	28	72	20	85	61	0	0	38	0.96
222578--222631	11	4.9	11	77	13	58	57	1	0	40	1.09
222594--222641	20	2.5	19	89	3	69	64	2	0	33	1.05
222581--222655	28	2.5	32	79	14	88	62	1	0	36	1.04
222687--222752	23	2.8	24	80	13	82	50	0	0	50	1.00
222684--222765	25	3.3	26	80	13	93	50	0	0	50	1.00
222716--222762	14	3.6	14	80	13	55	46	0	0	53	1.00
223339--223388	17	3.0	16	80	13	57	62	0	2	36	1.07
223823--223947	12	10.1	12	68	16	58	40	0	0	59	1.03
223939--223969	14	2.1	15	94	5	55	41	0	0	58	0.98
223997--224038	20	2.1	20	86	8	59	35	2	0	61	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
224030--224083	26	2.1	26	86	6	74	59	1	0	38	1.08
224125--224184	18	3.5	17	78	13	61	38	3	0	58	1.15
224125--224171	18	2.7	18	84	12	62	38	4	0	57	1.18
231354--231405	26	2.0	27	84	3	70	28	1	1	67	1.12
231447--231483	13	3.0	13	92	7	60	64	0	0	35	0.94
235726--235776	12	4.4	11	83	13	66	1	13	0	84	0.71
235726--235776	24	2.2	22	89	6	75	1	13	0	84	0.71
235726--235788	11	5.6	11	78	16	67	1	15	0	82	0.74
244289--244364	19	3.7	19	74	11	62	52	0	0	47	1.00
244407--244448	20	2.1	20	86	8	59	47	2	0	50	1.14
245092--245159	36	1.9	36	84	3	93	41	7	5	45	1.56
246915--246953	19	2.0	20	85	5	53	61	0	0	38	0.96
248204--248245	20	2.1	20	86	0	57	35	2	2	59	1.23
249032--249070	20	2.0	20	89	0	60	48	0	0	51	1.00
250870--250910	15	2.5	17	84	7	59	41	0	2	56	1.13
250869--250913	17	2.6	17	82	6	56	40	0	2	57	1.11
250920--250969	22	2.3	21	86	6	64	32	0	0	68	0.90
250951--250980	11	2.7	11	94	0	51	23	0	0	76	0.78
250899--250975	31	2.5	31	83	10	86	33	0	0	66	0.92
250919--251012	29	3.3	29	76	19	92	35	0	0	64	0.94
250979--251014	12	3.0	12	84	15	56	41	0	0	58	0.98
251265--251295	14	2.2	14	94	0	53	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
251271--251300	14	2.1	14	93	0	51	30	0	0	70	0.88
251230--251351	17	7.2	17	67	17	60	41	2	0	55	1.13
252068--252118	26	2.0	26	92	0	84	33	5	19	41	1.76
253125--253167	15	2.8	16	85	3	61	20	0	2	76	0.89
254666--254698	17	2.0	17	88	5	50	33	0	3	63	1.10
254807--254876	22	3.2	21	76	13	70	61	0	0	38	0.96
256032--256069	20	1.9	20	84	10	51	36	0	0	63	0.95
256691--256879	5	39.2	5	62	20	55	40	0	1	57	1.12
256774--256836	15	3.9	16	76	19	67	39	0	0	60	0.97
256741--256861	48	2.5	47	80	10	129	41	0	0	58	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17