genome.fa.s133.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold133
Parameters: 2 7 7 80 10 50 1000
Length:  2564099

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  6  of  17  ( 1989 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
636956--637033	20	3.9	19	76	6	75	34	11	14	39	1.82
637943--637996	22	2.5	22	96	3	101	18	11	9	61	1.55
640642--640701	14	4.1	15	73	18	54	46	3	1	48	1.28
642125--642231	26	4.2	26	76	19	86	65	0	0	34	0.93
642129--642190	17	3.7	18	75	16	53	66	0	0	33	0.92
642152--642232	26	3.2	26	78	15	98	67	0	0	32	0.91
642174--642233	11	5.5	11	75	13	52	68	0	0	31	0.90
643315--643378	20	3.4	18	72	17	58	65	0	0	34	0.93
643317--643381	23	2.8	23	88	6	96	64	0	0	35	0.94
643355--643500	30	4.7	32	70	18	87	59	0	0	39	1.02
643373--643477	27	3.6	30	74	17	89	56	0	0	42	1.06
643450--643498	11	4.7	11	75	14	50	67	0	0	32	0.91
643303--643499	17	12.1	17	68	19	80	59	1	0	38	1.06
643430--643499	6	12.2	6	71	14	58	64	0	0	35	0.94
643438--643499	30	2.0	31	87	3	90	64	0	0	35	0.94
643462--643507	19	2.5	20	86	10	62	69	0	0	30	0.89
643581--643615	15	2.3	15	90	9	54	54	0	0	45	0.99
644292--644343	12	4.5	11	77	17	52	69	0	1	28	0.99
644817--644900	35	2.4	34	84	6	114	48	0	3	47	1.19
644821--644926	35	3.0	36	80	6	101	52	0	1	45	1.11
644881--644931	15	3.5	15	76	7	52	64	0	0	35	0.94
645503--645549	21	2.2	21	81	7	51	38	4	0	57	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
645998--646058	19	3.3	19	78	15	74	60	0	1	37	1.07
645998--646068	36	1.9	38	91	5	119	61	0	2	35	1.10
646009--646068	18	3.4	18	80	11	79	63	0	3	33	1.11
646775--646801	11	2.5	11	100	0	54	62	0	0	37	0.95
647521--647573	25	2.1	25	100	0	106	37	7	20	33	1.81
651599--651653	20	2.8	20	82	0	74	40	12	12	34	1.82
652216--653422	28	41.9	28	85	5	1141	23	16	31	28	1.96
652216--653422	57	20.9	57	85	6	1173	23	16	31	28	1.96
652216--653422	86	14.0	86	84	6	1159	23	16	31	28	1.96
653138--653394	110	2.3	110	88	3	381	28	15	31	25	1.95
656763--656911	52	2.9	52	86	4	203	30	16	18	34	1.94
656900--656924	13	1.9	13	100	0	50	36	16	16	32	1.90
656969--657064	13	5.7	18	71	28	86	37	17	11	33	1.86
656962--657062	32	3.1	32	95	1	175	36	17	10	34	1.85
665499--665573	20	3.8	20	78	7	89	40	13	13	33	1.83
665496--665573	40	2.0	39	87	2	111	39	14	12	33	1.84
667540--667566	13	2.1	13	100	0	54	29	14	14	40	1.86
667596--667649	20	2.7	20	80	5	65	35	12	16	35	1.87
673651--673692	20	2.2	20	87	8	61	28	2	21	47	1.63
674320--674392	20	3.6	19	80	15	76	39	1	30	28	1.65
674284--674392	22	5.1	21	75	17	102	38	2	28	30	1.71
675046--675100	13	4.7	13	72	25	59	36	10	16	36	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
675012--675098	20	4.7	20	75	25	93	35	12	14	36	1.85
675028--675100	33	2.2	33	97	0	137	36	12	15	35	1.84
675809--675836	3	9.3	3	100	0	56	64	0	0	35	0.94
677215--677265	23	2.3	23	83	10	61	41	0	0	58	0.98
677994--678022	15	1.9	15	100	0	58	51	0	0	48	1.00
677991--678044	26	2.1	26	86	6	74	48	0	0	51	1.00
677998--678046	16	3.1	15	82	8	53	46	0	0	53	1.00
679738--679810	27	2.6	29	77	20	75	46	0	0	53	1.00
679736--679823	16	5.7	15	68	25	51	45	0	0	54	0.99
679861--679910	12	4.1	12	76	5	55	36	2	0	62	1.07
679845--679909	30	2.2	30	88	0	94	38	1	0	60	1.07
679814--679910	37	2.5	41	80	14	100	37	2	2	58	1.21
680664--680719	22	2.4	23	82	8	69	53	0	0	46	1.00
680708--680741	17	2.0	18	88	11	54	32	2	0	64	1.08
680780--680830	19	2.5	20	71	9	50	58	0	1	39	1.09
681482--681541	28	2.3	26	81	13	70	41	1	5	51	1.33
681761--681810	27	2.0	27	84	11	70	44	4	0	52	1.20
682153--682222	20	3.4	20	71	16	63	58	0	0	41	0.98
682931--683006	25	3.4	21	73	21	66	46	0	2	51	1.15
682929--682997	25	2.9	23	77	14	68	47	0	2	49	1.16
682972--683011	21	1.9	21	89	0	62	50	0	2	47	1.14
683906--683962	24	2.3	25	85	8	73	54	3	0	42	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
684274--684322	24	2.0	25	84	11	66	53	0	2	44	1.12
684681--684706	2	13.0	2	100	0	52	50	0	0	50	1.00
685120--685157	19	2.0	19	100	0	76	26	36	15	21	1.93
685316--685357	21	2.0	21	100	0	84	38	0	4	57	1.20
685517--685563	22	2.0	22	84	12	58	63	0	2	34	1.06
696621--696663	16	2.7	16	77	0	50	44	25	13	16	1.85
696653--696717	23	2.8	23	83	0	85	41	26	13	18	1.88
697532--697622	16	5.7	16	76	5	85	42	31	13	12	1.80
697544--697631	16	5.5	16	81	0	104	46	30	12	10	1.75
697545--697642	16	6.1	16	81	0	70	46	30	11	11	1.74
697532--697631	32	3.1	32	83	0	119	44	31	13	12	1.79
697834--698073	62	3.8	62	77	10	241	20	25	12	42	1.87
697882--698162	33	8.6	34	70	11	115	20	26	12	40	1.88
697834--698077	130	1.9	131	85	2	339	20	24	12	43	1.86
697883--698077	68	2.9	69	75	13	176	19	25	12	43	1.86
698042--698195	63	2.5	61	81	6	177	22	25	11	40	1.88
697911--698168	96	2.7	96	73	14	246	20	26	12	40	1.87
698138--698207	27	2.6	27	84	4	88	24	27	11	37	1.89
698138--698222	27	3.2	26	77	9	82	22	27	11	38	1.89
698217--698796	190	3.1	191	81	6	560	26	20	15	36	1.93
698217--698797	128	4.6	128	78	6	465	26	20	15	36	1.93
698218--698798	62	9.2	62	75	6	441	27	20	15	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
698826--699306	62	7.7	62	80	3	428	31	25	22	20	1.98
698832--699386	93	5.9	93	75	6	440	31	25	22	19	1.98
699213--699391	97	1.9	96	83	1	232	30	26	22	19	1.98
698826--699386	31	18.0	31	73	6	366	31	26	22	19	1.98
699965--700002	20	1.9	20	94	0	67	36	13	21	28	1.91
700051--700102	20	2.6	20	81	0	59	40	15	9	34	1.80
701862--701888	2	13.5	2	100	0	54	51	0	0	48	1.00
706635--706675	21	2.0	21	90	4	66	56	0	0	43	0.99
707220--707256	19	1.9	19	88	0	56	43	0	0	56	0.99
707304--707336	14	2.4	14	94	0	57	75	0	0	24	0.80
711390--711434	21	2.1	22	84	8	58	35	15	11	37	1.83
712197--712270	5	15.2	5	74	16	66	32	0	0	67	0.91
712200--712270	11	7.0	11	81	10	73	32	0	0	67	0.91
712194--712274	28	3.0	28	80	10	96	34	0	0	65	0.93
712304--712335	15	2.1	15	94	0	55	53	0	0	46	1.00
712724--712772	3	16.3	3	84	16	66	67	2	30	0	1.02
712705--712750	15	3.0	16	87	6	60	63	10	26	0	1.27
712724--712772	18	2.7	18	93	6	82	67	2	30	0	1.02
714230--714285	19	2.9	20	82	15	73	50	0	0	50	1.00
716087--716237	28	5.4	28	78	10	121	49	3	7	39	1.49
716025--716237	84	2.5	82	79	9	193	47	5	7	38	1.56
716188--716238	14	3.6	14	76	12	59	60	5	3	29	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
717784--717814	16	1.9	16	100	0	62	45	3	6	45	1.45
720705--720735	15	2.1	15	100	0	62	51	12	6	29	1.65
722795--722836	21	2.0	21	100	0	84	42	9	19	28	1.82
722823--722848	13	2.0	13	100	0	52	30	15	15	38	1.88
725212--725337	52	2.4	52	82	3	173	31	27	10	30	1.90
725320--725396	28	2.8	28	82	7	86	23	35	19	22	1.96
725352--725584	79	2.9	79	81	5	274	27	28	13	30	1.94
730924--730964	15	2.5	17	81	18	52	80	4	4	9	1.00
731070--731109	12	3.1	13	89	10	64	77	0	22	0	0.77
731061--731105	12	3.8	12	82	5	56	73	0	24	2	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17