genome.fa.s184.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold184
Parameters: 2 7 7 80 10 50 1000
Length:  2218657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  3  of  13  ( 1455 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
380348--380497	66	2.3	66	80	0	156	18	18	18	44	1.87
380536--380658	64	1.9	63	80	6	140	17	18	20	43	1.88
383065--383204	51	2.8	52	82	4	162	27	19	14	39	1.90
385539--385807	79	3.4	78	83	4	312	27	26	14	31	1.95
385743--385856	50	2.2	52	83	6	144	30	29	9	29	1.89
385743--385857	51	2.3	51	84	4	144	30	29	9	30	1.89
385790--386318	79	6.7	79	75	8	427	27	25	14	32	1.94
385582--386017	208	2.1	209	82	7	539	28	25	13	32	1.93
385522--386093	287	2.0	288	81	7	664	27	25	13	33	1.93
385791--386305	237	2.2	237	79	5	542	27	25	13	33	1.94
385791--386318	158	3.4	157	81	6	595	27	25	14	32	1.94
388343--388384	4	10.5	4	94	0	75	21	0	2	76	0.90
393400--393468	33	2.1	33	88	0	102	34	18	13	33	1.90
393876--393969	22	4.5	22	74	14	83	26	30	4	38	1.76
397754--397806	21	2.7	19	88	5	70	41	13	16	28	1.86
397753--397838	19	4.7	19	75	19	85	37	12	18	31	1.89
397773--397884	32	3.5	32	86	0	152	38	13	16	31	1.88
397753--397875	19	7.1	18	68	23	77	38	13	17	31	1.87
397923--397947	13	1.9	13	100	0	50	32	20	8	40	1.81
405755--405823	33	2.1	33	89	5	104	39	18	10	31	1.84
405790--405950	63	2.6	63	94	3	272	33	18	17	31	1.94
411553--411591	16	2.4	16	91	4	60	84	10	2	2	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
411553--411609	9	6.6	8	77	15	51	84	7	7	1	0.85
412589--412871	61	4.6	61	85	3	383	25	25	19	30	1.98
412590--412871	123	2.3	122	86	7	414	25	25	19	30	1.98
413694--413737	23	1.9	23	81	9	54	59	11	4	25	1.51
415760--416574	79	10.4	78	76	10	564	28	23	13	34	1.92
421445--421687	29	8.6	28	72	10	183	25	30	12	31	1.93
421704--421796	29	3.1	28	73	11	78	26	27	10	34	1.90
421811--422087	63	4.4	63	77	4	256	31	23	18	26	1.97
421810--422121	31	9.9	31	76	12	203	30	24	17	27	1.97
422242--422519	154	1.8	154	80	1	333	26	23	12	37	1.91
422233--422896	104	6.4	104	74	5	439	25	22	14	37	1.92
422251--422898	52	12.5	52	73	5	358	24	22	14	37	1.92
422251--422898	156	4.2	155	75	3	451	24	22	14	37	1.92
422453--423055	52	11.5	52	75	7	242	25	23	15	36	1.93
423177--423399	86	2.6	86	88	1	322	30	25	14	29	1.95
423745--423861	52	2.3	52	85	2	157	29	13	14	42	1.84
438174--438238	33	2.0	33	87	6	96	30	20	12	36	1.89
438267--438319	19	2.7	20	82	2	72	39	13	16	30	1.87
438308--438332	13	1.9	13	100	0	50	32	16	16	36	1.90
439025--439049	13	1.9	13	100	0	50	32	16	16	36	1.90
439727--439804	20	3.9	20	78	6	77	34	14	11	39	1.82
453751--453827	28	2.8	26	75	11	73	80	12	1	5	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
453785--453829	16	2.8	16	86	3	63	80	13	0	6	0.91
455040--455696	59	11.2	58	79	10	583	30	31	16	22	1.96
455038--455696	146	4.5	143	85	6	745	30	31	16	22	1.96
455039--455696	30	22.5	29	80	9	594	30	31	16	22	1.96
455786--455908	49	2.6	46	81	7	140	21	29	19	29	1.98
456647--456721	20	3.8	20	85	0	105	30	16	13	40	1.86
456738--456791	20	2.7	20	76	0	54	35	9	14	40	1.78
458528--458556	10	2.7	11	94	5	51	34	13	0	51	1.42
459591--459615	13	1.9	13	100	0	50	32	16	16	36	1.90
459603--459655	20	2.6	21	82	8	65	37	16	16	28	1.91
459717--459742	13	2.0	13	100	0	52	30	15	15	38	1.88
459696--459764	33	2.1	33	89	5	104	36	18	11	33	1.87
463804--463833	15	2.0	15	93	0	51	50	16	20	13	1.78
463793--463833	15	2.7	16	81	11	50	46	17	19	17	1.85
466346--466387	20	2.0	21	90	4	68	21	42	28	7	1.79
466764--466788	13	1.9	13	100	0	50	36	16	16	32	1.90
466744--466810	33	2.0	33	88	0	98	32	11	14	40	1.83
466852--466876	13	1.9	13	100	0	50	32	16	16	36	1.90
466885--467009	52	2.4	52	93	0	214	36	18	17	27	1.93
475138--475294	32	5.1	31	84	9	178	24	31	14	29	1.95
475141--475281	62	2.3	63	90	3	223	25	31	14	27	1.95
475269--475856	33	17.8	33	78	13	538	20	34	12	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
475365--475425	28	2.2	27	88	2	86	22	34	13	29	1.92
475532--475752	34	7.2	28	73	18	133	19	34	13	31	1.91
475167--475856	68	10.5	67	77	14	490	20	34	12	32	1.90
475629--475680	27	1.9	27	88	7	79	23	34	15	26	1.94
475174--475851	96	6.9	95	74	16	477	20	34	12	31	1.91
475234--475817	260	2.2	256	84	8	773	20	35	12	31	1.90
475659--475876	105	2.1	104	85	5	289	20	35	11	32	1.89
475565--475876	61	4.7	71	79	11	242	20	35	12	31	1.89
475865--475995	33	4.0	33	92	4	212	28	35	17	18	1.93
475990--476129	43	3.1	43	85	6	181	26	27	17	28	1.97
476083--476204	52	2.3	55	85	4	178	25	24	13	36	1.93
475990--476182	95	2.1	92	88	5	280	25	26	16	30	1.97
477123--477147	13	1.9	13	100	0	50	36	16	16	32	1.90
477107--477169	33	1.9	33	86	0	90	33	12	14	39	1.84
477210--477234	13	1.9	13	100	0	50	32	16	16	36	1.90
477243--477367	52	2.4	52	91	0	196	36	16	18	28	1.93
481655--481698	21	2.1	21	100	0	88	38	0	13	47	1.43
482298--482352	20	2.7	21	83	8	69	40	16	16	27	1.89
482414--482439	13	2.0	13	100	0	52	30	15	15	38	1.88
482393--482461	33	2.1	33	91	5	113	36	18	13	31	1.89
487296--487327	15	2.1	15	94	0	55	34	3	0	62	1.11
488200--488281	41	2.0	41	95	0	146	40	20	10	28	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
489581--489612	1	32.0	1	100	0	64	0	0	100	0	0.00
499919--499957	20	2.0	20	90	5	62	74	0	15	10	1.07
500238--500262	11	2.3	11	100	0	50	16	20	16	48	1.82
500724--501015	161	1.8	160	84	6	403	38	9	11	40	1.74
501009--501034	12	2.2	12	100	0	52	69	0	0	30	0.89
502722--502803	34	2.4	34	89	0	128	26	42	6	24	1.78
502680--502771	40	2.3	40	84	0	112	22	43	6	27	1.78
514023--514156	51	2.7	50	88	3	189	28	15	14	41	1.86
521152--521181	2	15.0	2	92	0	51	46	0	3	50	1.18
522557--522783	98	2.3	97	90	3	339	33	15	25	25	1.95
526897--527532	28	22.3	28	83	4	695	23	17	30	28	1.97
528732--528822	9	9.3	10	74	11	73	3	5	10	80	1.00
528761--528822	29	2.3	27	91	8	99	3	3	8	85	0.81
542727--542797	20	3.5	20	74	0	70	43	14	9	32	1.78
545373--545447	32	2.4	32	88	6	109	42	16	17	24	1.88
546330--546425	32	3.1	31	86	5	133	21	17	28	32	1.96
546349--546998	28	22.6	28	77	7	427	24	18	28	29	1.98
546546--546648	29	3.5	28	72	17	93	17	20	33	28	1.95
546326--546649	59	5.5	59	76	11	224	21	18	30	29	1.97
546404--546997	84	7.0	84	77	8	502	24	18	27	28	1.98
548204--548255	21	2.5	22	81	12	65	38	3	9	48	1.54
548196--548308	53	2.2	53	85	7	151	37	2	7	52	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
548205--548330	32	4.0	30	76	18	107	38	2	7	52	1.42
548232--548330	21	4.6	21	85	2	117	38	2	6	53	1.37
548232--548329	11	9.1	11	73	15	80	37	2	6	54	1.37
548259--548318	10	5.8	10	73	21	52	36	1	5	56	1.31
548379--548417	19	2.1	19	95	0	69	35	5	10	48	1.59
550843--550887	19	2.4	19	96	0	81	24	22	11	42	1.86
554559--554608	22	2.2	23	78	3	57	20	6	2	72	1.16
554935--555040	53	2.0	54	88	5	162	37	18	10	33	1.85
559810--559873	26	2.4	25	75	10	65	43	0	0	56	0.99
563503--563546	21	2.1	21	91	0	70	38	2	18	40	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13