genome.fa.s184.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold184
Parameters: 2 7 7 80 10 50 1000
Length:  2218657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  6  of  13  ( 1455 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
949900--949932	17	1.9	17	93	0	57	87	12	0	0	0.53
950175--950218	13	3.1	14	83	6	54	81	11	6	0	0.86
951229--951774	68	8.4	67	76	13	405	20	32	14	32	1.93
951229--951464	34	6.9	37	74	14	199	19	32	13	34	1.90
951492--951537	23	2.0	23	95	0	83	28	32	21	17	1.96
951517--951769	99	2.5	99	86	4	348	20	33	15	31	1.93
951517--951774	33	7.8	32	77	12	213	19	32	15	32	1.93
951776--952208	32	13.5	32	87	6	594	28	34	18	18	1.94
951784--952208	129	3.3	128	90	4	689	28	34	18	17	1.94
951776--952208	193	2.3	193	91	3	714	28	34	18	18	1.94
952196--952661	92	5.1	90	91	5	588	24	26	18	31	1.97
952214--952661	141	3.2	139	90	6	646	24	25	18	31	1.98
952201--952710	233	2.2	234	94	1	896	24	25	18	31	1.97
952615--952768	52	2.9	53	81	4	193	24	24	15	35	1.94
952664--952887	116	1.9	119	84	7	303	23	25	15	35	1.94
952783--952898	49	2.4	49	97	0	214	23	26	16	33	1.95
953644--953744	32	3.1	32	95	1	175	34	10	17	36	1.85
953642--953739	19	5.8	18	71	28	90	33	11	17	37	1.85
953664--953720	13	3.9	13	74	24	51	35	12	17	35	1.87
953782--953806	13	1.9	13	100	0	50	32	16	16	36	1.90
953675--953830	86	1.8	84	85	8	217	34	14	16	34	1.89
953696--953879	86	2.2	84	79	10	187	34	16	16	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
953815--953943	52	2.5	52	93	0	213	32	19	18	29	1.96
957943--958056	35	3.3	33	84	8	138	51	2	2	42	1.29
959592--959640	25	2.0	25	88	8	73	65	0	8	26	1.20
959593--959647	25	2.2	25	83	9	67	67	0	10	21	1.21
961505--961557	19	2.9	19	83	10	58	45	0	0	54	0.99
961534--961578	17	2.6	18	79	13	58	55	0	0	44	0.99
963379--963413	3	11.7	3	100	0	70	65	0	0	34	0.93
963943--963969	7	3.9	7	100	0	54	88	0	0	11	0.50
965477--965524	20	2.3	21	78	3	53	47	4	14	33	1.63
965610--965672	20	3.1	20	86	2	81	34	14	9	41	1.78
965634--965680	20	2.3	20	88	0	67	38	14	4	42	1.66
965667--965826	80	2.0	80	86	0	221	31	15	14	38	1.87
970050--970098	19	2.5	20	80	16	57	63	0	0	36	0.95
970325--970365	2	21.0	2	90	5	66	51	0	0	48	1.00
972695--972769	20	3.8	20	87	0	114	32	14	13	40	1.85
973197--973234	13	3.0	13	80	7	51	23	31	7	36	1.84
973198--973247	25	2.0	25	84	7	66	26	28	6	40	1.79
974634--974675	15	2.8	16	78	10	52	73	2	7	16	1.15
975600--975644	23	1.9	24	86	4	65	71	2	2	24	1.09
976441--976492	6	8.2	6	82	18	61	21	0	0	78	0.74
976445--976502	26	2.2	27	81	9	75	27	0	0	72	0.85
976652--976696	21	2.0	23	87	8	67	66	2	0	31	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
976695--976723	13	2.2	13	100	0	58	72	0	0	27	0.85
977334--977405	27	2.7	27	86	0	99	31	6	15	45	1.72
977391--977436	24	1.9	25	86	8	69	21	6	23	47	1.74
980278--980323	24	1.9	25	86	8	69	21	6	23	47	1.74
981910--981993	35	2.7	30	77	18	91	54	1	2	41	1.21
981921--982040	35	3.2	38	82	9	115	54	1	2	41	1.24
983134--983167	16	2.3	15	90	10	52	47	8	8	35	1.66
983429--984647	327	3.8	325	86	3	1621	43	9	9	37	1.70
984742--984777	2	18.0	2	100	0	72	50	0	0	50	1.00
986615--986658	21	2.2	20	83	4	52	52	4	4	38	1.42
991181--991205	11	2.3	11	100	0	50	48	8	0	44	1.32
992071--992117	26	1.9	25	83	12	62	63	8	0	27	1.23
992772--992809	19	2.0	20	89	5	60	47	2	0	50	1.15
992937--992971	17	2.1	17	89	5	54	54	0	0	45	0.99
993515--993574	20	2.9	21	77	18	63	66	0	1	31	1.01
993516--993585	22	3.3	22	69	17	58	65	0	2	31	1.07
993810--993857	14	3.6	14	72	11	55	54	2	0	43	1.12
993817--993883	26	2.6	27	81	11	77	55	2	1	40	1.24
993868--993944	11	7.5	11	74	12	65	50	7	2	38	1.45
993874--993944	31	2.3	31	82	0	88	50	8	2	38	1.47
993905--993944	20	2.0	20	95	0	71	52	5	2	40	1.37
994099--994670	101	5.6	101	88	4	753	30	11	16	42	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
997921--997991	31	2.3	30	81	9	81	67	1	4	26	1.17
1005045--1005169	52	2.4	52	95	0	223	28	17	18	36	1.94
1005045--1005189	52	2.8	51	89	4	211	29	17	18	34	1.94
1005178--1005202	13	1.9	13	100	0	50	36	16	16	32	1.90
1005266--1005290	13	1.9	13	100	0	50	32	16	16	36	1.90
1006521--1006561	21	2.0	20	85	4	55	39	0	2	58	1.11
1014064--1015059	165	6.1	163	78	8	833	30	11	8	49	1.69
1014064--1015059	166	6.1	164	78	7	864	30	11	8	49	1.69
1016247--1016562	162	2.0	160	85	5	431	37	8	11	42	1.72
1019172--1019217	17	2.7	17	80	12	58	39	0	6	54	1.26
1022210--1022259	20	2.5	20	90	3	75	32	16	18	34	1.92
1022302--1022336	13	2.7	13	95	0	61	31	11	17	40	1.85
1025407--1025462	20	2.8	20	89	5	78	41	12	14	32	1.83
1026306--1026760	39	9.8	49	76	13	274	29	18	27	24	1.98
1026306--1026542	101	2.3	100	82	5	280	31	16	27	24	1.97
1026583--1026800	48	4.9	46	76	13	213	28	19	26	25	1.99
1026456--1026795	126	2.6	128	84	6	415	27	20	27	24	1.99
1026544--1026805	87	3.0	87	86	2	362	28	19	27	24	1.99
1026863--1027198	55	6.1	55	86	5	455	19	17	31	32	1.94
1026859--1027194	27	12.2	27	87	6	462	18	17	30	33	1.94
1028308--1028415	31	3.9	29	73	24	106	37	8	21	32	1.83
1028301--1028414	52	2.2	52	96	0	210	37	7	20	34	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1028339--1028385	21	2.1	23	92	7	80	38	6	21	34	1.79
1031867--1031918	20	2.6	20	84	6	70	30	15	15	38	1.88
1032532--1033133	162	3.7	159	85	2	763	40	10	10	37	1.75
1033944--1034747	166	4.9	165	77	11	704	49	8	11	30	1.68
1034803--1034849	22	2.1	22	81	14	53	42	4	8	44	1.54
1035890--1035938	20	2.5	20	80	12	64	40	12	18	28	1.86
1041872--1041918	20	2.3	20	88	0	76	63	6	10	19	1.47
1041905--1041953	25	2.0	24	84	4	62	59	2	2	36	1.21
1042239--1042271	7	4.9	7	85	7	50	3	30	0	66	1.06
1044048--1044085	14	2.8	13	88	7	58	63	0	5	31	1.17
1050281--1050355	20	3.8	20	78	0	87	34	13	12	40	1.81
1050281--1050358	40	2.0	39	87	2	111	34	12	12	39	1.82
1051266--1051324	23	2.7	23	94	5	104	16	8	8	66	1.43
1057329--1057373	16	2.9	15	78	12	54	40	4	6	48	1.49
1059888--1060024	51	2.7	50	84	6	168	31	15	10	42	1.81
1060662--1060720	22	2.7	22	94	0	91	25	22	15	37	1.93
1068990--1069038	20	2.4	21	83	10	66	42	16	12	28	1.84
1074451--1074508	26	2.3	25	91	5	91	25	15	25	32	1.95
1079020--1079077	26	2.3	25	91	5	91	25	15	25	32	1.95
1082436--1082464	12	2.5	12	94	5	51	24	0	20	55	1.44
1082739--1083022	38	7.6	38	74	9	174	31	14	14	40	1.85
1082766--1083025	37	6.9	38	76	8	189	30	14	15	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1082781--1083032	75	3.4	75	78	9	221	30	14	15	40	1.87
1084005--1084050	19	2.3	21	77	14	60	32	10	10	45	1.74
1084167--1084288	62	2.0	62	93	0	208	36	16	18	27	1.93
1084919--1084985	37	1.9	35	88	11	102	29	25	11	32	1.92
1085455--1085480	13	2.0	13	100	0	52	38	15	15	30	1.88
1085515--1085560	23	2.0	23	83	8	58	34	10	28	26	1.90
1085551--1085606	21	2.6	22	91	5	96	39	10	23	26	1.87
1085594--1085624	10	3.1	10	90	0	53	41	6	29	22	1.78
1085648--1085785	53	2.6	53	94	1	240	26	17	18	36	1.93
1085845--1085885	21	2.0	21	85	9	57	39	9	12	39	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13