genome.fa.s184.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold184
Parameters: 2 7 7 80 10 50 1000
Length:  2218657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  8  of  13  ( 1455 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1280555--1280622	33	2.1	33	86	2	93	35	13	16	35	1.87
1284814--1284879	35	1.9	35	93	3	116	33	22	12	31	1.91
1285318--1285355	20	1.9	20	88	0	58	39	7	10	42	1.69
1288324--1288415	36	2.7	35	81	8	111	30	26	14	29	1.95
1288924--1288963	19	2.0	20	85	4	55	40	20	17	22	1.92
1295509--1295553	23	1.9	23	86	4	63	42	4	11	42	1.60
1299350--1299783	157	2.8	157	89	1	665	38	18	18	24	1.93
1299350--1299800	158	2.9	155	88	4	624	37	19	18	25	1.94
1301452--1301528	20	3.8	20	76	6	75	41	14	14	29	1.85
1302324--1302402	38	2.1	39	95	2	142	36	11	11	40	1.77
1302324--1302413	38	2.3	38	86	5	137	34	10	11	44	1.73
1305848--1305878	13	2.4	13	94	0	53	35	12	16	35	1.87
1305828--1305894	33	2.0	33	88	5	100	35	17	13	32	1.89
1305943--1305969	13	2.1	13	100	0	54	40	14	14	29	1.86
1311158--1311250	37	2.5	37	85	3	134	6	12	32	48	1.67
1311720--1311754	12	2.9	12	91	0	61	42	14	22	20	1.88
1316708--1316733	13	2.0	13	100	0	52	30	15	15	38	1.88
1316814--1316867	20	2.7	20	100	0	108	24	11	18	46	1.81
1317385--1317428	21	2.1	21	83	8	54	25	31	4	38	1.76
1319232--1319257	13	2.0	13	100	0	52	38	15	15	30	1.88
1323171--1323215	21	2.1	21	88	8	65	22	17	4	55	1.60
1324739--1324768	13	2.3	13	94	0	51	33	16	10	40	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1327044--1327099	19	2.8	20	91	2	87	30	17	14	37	1.90
1327045--1327099	20	2.8	19	91	2	83	30	16	14	38	1.89
1327128--1327180	20	2.7	20	82	14	65	32	13	22	32	1.92
1336377--1336505	52	2.5	52	97	0	240	28	17	18	35	1.93
1336377--1336525	52	2.9	51	91	4	228	30	16	18	34	1.94
1336514--1336538	13	1.9	13	100	0	50	36	16	16	32	1.90
1336579--1336644	32	2.0	33	91	2	107	36	15	12	36	1.84
1337838--1337893	19	2.9	19	91	2	85	35	16	17	30	1.92
1337878--1337909	13	2.5	13	94	0	55	40	12	15	31	1.85
1338816--1338882	33	2.0	33	85	0	89	26	14	31	26	1.95
1348873--1348936	20	3.5	20	68	27	70	25	14	17	43	1.86
1348873--1348951	33	2.4	33	97	0	149	25	13	17	43	1.86
1348925--1348949	13	1.9	13	100	0	50	24	16	20	40	1.91
1348938--1348991	19	2.8	20	88	5	92	31	18	14	35	1.91
1353881--1353927	25	1.9	24	82	4	58	42	0	2	55	1.12
1358040--1358257	10	20.5	11	66	17	70	48	2	2	47	1.27
1358040--1358266	20	10.7	22	66	18	85	49	2	2	46	1.26
1358039--1358123	32	2.7	31	85	3	116	50	3	0	45	1.18
1358102--1358263	22	7.7	21	74	13	129	48	1	3	46	1.25
1358084--1358241	12	14.7	11	64	25	54	49	1	2	46	1.26
1358099--1358225	65	1.9	66	87	4	186	48	1	3	46	1.27
1358133--1358257	42	3.0	42	83	1	133	47	1	3	48	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1358198--1358257	32	1.9	32	90	10	97	43	0	3	53	1.17
1358102--1358297	10	18.6	10	71	19	107	49	1	3	45	1.26
1358941--1359188	124	2.0	124	99	0	487	25	14	16	43	1.85
1359192--1359281	20	5.2	20	64	33	73	32	18	10	38	1.84
1359209--1359269	13	5.2	13	72	22	62	36	16	11	36	1.85
1359183--1359320	33	4.2	33	88	1	197	34	16	10	37	1.84
1359353--1359401	19	2.5	20	93	3	82	36	14	18	30	1.90
1359390--1359414	13	1.9	13	100	0	50	32	16	16	36	1.90
1359737--1359786	22	2.4	19	84	15	64	60	0	0	40	0.97
1359737--1359789	20	2.5	23	88	11	78	58	0	0	41	0.98
1359737--1359801	12	5.8	12	74	18	61	56	1	0	41	1.08
1359749--1359819	21	3.3	22	76	9	67	52	2	0	45	1.15
1360281--1360375	43	2.2	43	82	0	109	33	6	14	45	1.71
1361082--1361128	23	2.0	24	84	12	62	61	19	4	14	1.49
1362027--1362191	84	2.0	84	82	7	201	24	19	3	52	1.62
1362580--1362621	21	2.0	21	90	0	66	23	26	4	45	1.73
1364237--1364262	13	2.0	13	100	0	52	30	15	15	38	1.88
1364217--1364280	32	2.0	33	87	9	96	28	15	15	40	1.88
1368784--1368840	20	2.8	21	81	2	71	35	17	10	36	1.84
1377613--1377640	13	2.2	13	100	0	56	28	14	14	42	1.84
1377594--1377658	32	2.0	32	90	3	103	27	16	13	41	1.87
1377624--1377678	19	2.8	19	94	2	92	30	20	10	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1378016--1378070	19	2.8	20	83	2	67	30	18	16	34	1.93
1378120--1378145	13	2.0	13	100	0	52	30	15	15	38	1.88
1378099--1378168	33	2.1	33	86	7	97	32	11	20	35	1.88
1381154--1381179	13	2.0	13	100	0	52	30	23	15	30	1.95
1381262--1381317	21	2.6	22	94	5	105	37	10	25	26	1.88
1381305--1381335	10	3.1	10	90	0	53	41	6	29	22	1.78
1381359--1381495	53	2.6	53	92	1	229	27	16	18	38	1.91
1381465--1381535	20	3.5	20	73	17	67	28	12	15	43	1.83
1381575--1381615	21	2.0	21	85	9	57	39	9	12	39	1.76
1386838--1386863	13	2.0	13	100	0	52	30	23	15	30	1.95
1386946--1387001	21	2.6	22	94	5	105	37	10	25	26	1.88
1386989--1387019	10	3.1	10	90	0	53	41	6	29	22	1.78
1387043--1387179	53	2.6	53	92	1	229	27	16	18	38	1.91
1387149--1387219	20	3.5	20	73	17	67	28	12	15	43	1.83
1387259--1387299	21	2.0	21	85	9	57	39	9	12	39	1.76
1391577--1391622	22	2.2	19	82	17	56	32	17	0	50	1.47
1393876--1393932	19	2.9	19	89	2	87	31	17	17	33	1.93
1393961--1394025	33	1.9	33	87	9	96	32	9	21	36	1.85
1393993--1394050	22	2.7	21	92	5	98	34	8	20	36	1.84
1402537--1402566	14	2.1	14	100	0	60	30	13	20	36	1.90
1402565--1402599	2	17.5	2	93	0	61	54	0	0	45	0.99
1403127--1403182	25	2.2	25	82	14	71	21	0	7	71	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1403677--1403723	2	24.0	2	91	4	78	48	0	2	48	1.13
1404442--1404651	50	4.2	50	85	0	285	29	18	18	34	1.94
1408932--1409191	50	5.2	50	90	0	360	27	17	20	34	1.95
1409682--1409721	13	3.1	13	96	0	71	30	20	15	35	1.93
1412388--1412444	16	3.6	16	80	4	62	12	10	29	47	1.74
1412450--1412493	17	2.6	17	78	3	54	34	4	6	54	1.47
1412620--1412658	18	2.2	18	95	4	71	48	0	0	51	1.00
1412628--1412667	18	2.2	18	86	8	55	52	2	0	45	1.14
1412805--1412848	12	4.1	11	77	16	56	63	0	0	36	0.95
1412892--1413012	56	2.2	56	86	4	165	49	23	13	14	1.77
1413469--1413498	16	1.9	15	93	6	51	26	16	3	53	1.59
1413994--1414034	16	2.6	16	88	0	64	7	19	41	31	1.79
1414962--1415035	20	3.7	20	82	8	78	29	17	14	37	1.90
1417427--1417465	13	3.0	13	96	0	69	35	15	17	30	1.91
1423922--1423946	13	1.9	13	100	0	50	32	16	16	36	1.90
1423955--1424075	52	2.3	52	91	2	199	35	17	17	29	1.93
1432277--1432497	31	6.9	31	76	11	196	21	34	15	28	1.94
1432278--1432428	63	2.4	61	82	8	171	22	33	16	27	1.96
1432293--1432497	98	2.1	94	82	7	234	20	35	15	28	1.94
1432437--1432891	34	15.3	27	72	20	197	20	35	14	29	1.92
1432517--1432962	34	14.2	33	74	16	237	20	34	13	31	1.92
1432753--1432920	89	1.9	89	81	4	205	21	35	14	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1432938--1433056	33	3.6	33	90	4	188	29	34	17	18	1.94
1433056--1433714	49	13.8	49	86	6	888	25	25	17	31	1.97
1433056--1433714	141	4.6	141	89	4	979	25	25	17	31	1.97
1433624--1433777	52	2.9	53	79	4	175	24	23	15	36	1.94
1433727--1433853	67	1.9	68	85	4	177	23	24	11	40	1.88
1434618--1434642	13	1.9	13	100	0	50	36	16	16	32	1.90
1434599--1434664	33	2.0	32	85	2	87	34	10	13	40	1.79
1434714--1434738	13	1.9	13	100	0	50	32	16	16	36	1.90
1434747--1434867	52	2.3	52	94	0	215	35	18	17	28	1.93
1437988--1438013	13	2.0	13	100	0	52	30	15	15	38	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13