genome.fa.s184.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold184
Parameters: 2 7 7 80 10 50 1000
Length:  2218657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  4  of  13  ( 1455 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
564869--564916	22	2.2	22	88	0	69	25	35	6	33	1.81
566751--566777	13	2.1	13	100	0	54	40	14	14	29	1.86
566808--566845	20	1.9	20	100	0	76	31	15	10	42	1.81
572976--573001	13	2.0	13	100	0	52	38	15	15	30	1.88
572936--572993	20	2.9	20	87	5	82	34	17	13	34	1.89
572956--573022	33	2.0	33	94	0	116	37	17	11	32	1.87
573203--573245	2	21.5	2	100	0	86	48	0	0	51	1.00
573902--573985	19	4.7	19	80	18	99	34	11	16	36	1.86
573942--573966	13	1.9	13	100	0	50	36	16	16	32	1.90
573923--573987	32	2.0	32	96	0	121	33	12	16	36	1.87
574028--574052	13	1.9	13	100	0	50	32	16	16	36	1.90
574061--574191	52	2.5	52	92	0	217	35	19	16	29	1.94
580336--580403	20	3.8	20	72	25	78	38	17	10	33	1.84
580334--580419	13	7.5	13	69	28	70	37	17	11	33	1.86
580334--580414	33	2.5	33	97	0	153	38	18	11	32	1.86
580616--580652	2	18.5	2	100	0	74	48	0	0	51	1.00
581230--581269	2	20.5	2	89	5	64	50	0	0	50	1.00
581724--581786	32	2.0	32	96	0	117	33	11	20	34	1.88
581743--581767	13	1.9	13	100	0	50	36	16	16	32	1.90
581723--581788	19	3.8	19	75	22	81	33	10	19	36	1.86
581830--581854	13	1.9	13	100	0	50	32	16	16	36	1.90
581863--581988	52	2.4	52	94	0	225	36	18	18	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
589391--589453	29	2.2	29	91	0	99	50	3	0	46	1.17
589401--589447	13	3.4	13	78	16	58	42	0	0	57	0.98
592928--592970	23	1.9	23	85	4	61	44	2	0	53	1.13
598060--598152	41	2.3	41	88	0	141	35	12	12	38	1.82
598362--598408	21	2.2	21	85	7	60	36	10	14	38	1.81
598334--599001	339	2.0	339	88	1	998	40	12	16	30	1.86
599230--599259	14	2.1	14	93	0	51	26	6	30	36	1.82
601543--601578	17	2.1	17	90	10	56	75	0	0	25	0.81
603842--603878	18	2.1	18	100	0	74	43	10	35	10	1.75
604818--604873	22	2.6	21	78	10	60	35	1	8	53	1.43
605004--605043	21	1.9	21	84	0	53	25	0	2	72	0.97
608661--609311	168	3.9	166	83	6	752	27	12	8	51	1.69
611591--612119	154	3.4	153	82	5	575	24	15	18	40	1.90
621859--621899	16	2.6	16	92	0	64	48	9	4	36	1.58
622163--622226	25	2.4	26	77	15	60	40	3	4	51	1.38
623402--623438	19	2.0	18	89	5	56	32	0	0	67	0.91
623469--623517	3	16.3	3	82	0	62	34	8	0	57	1.29
624306--624361	24	2.3	24	82	14	71	60	0	1	37	1.07
628320--628375	22	2.5	22	88	8	78	51	1	1	44	1.22
630045--630097	19	2.7	20	88	8	74	24	15	18	41	1.89
630065--630113	19	2.5	19	86	3	62	32	14	18	34	1.91
630146--630214	33	2.1	33	83	0	84	37	10	15	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
636329--636369	13	3.2	13	92	0	73	31	14	14	39	1.87
638824--638896	20	3.7	19	85	7	85	28	16	19	35	1.93
638925--638951	13	2.1	13	100	0	54	29	14	14	40	1.86
645684--646053	115	3.2	114	81	4	422	29	10	12	48	1.74
645684--646053	57	6.4	57	80	5	404	29	10	12	48	1.74
645786--645880	27	3.4	27	69	17	77	29	7	10	52	1.63
645684--646053	172	2.1	173	85	3	487	29	10	12	48	1.74
647081--647154	27	2.7	27	97	0	139	24	16	33	25	1.95
651646--651673	14	2.0	14	100	0	56	35	7	21	35	1.81
654120--654147	13	2.2	13	100	0	56	28	14	17	39	1.89
666842--666867	13	2.0	13	100	0	52	84	0	0	15	0.62
666921--666988	19	3.9	19	78	21	85	35	11	14	38	1.83
666942--666966	13	1.9	13	100	0	50	36	16	16	32	1.90
666923--666985	32	2.0	32	96	0	117	34	12	15	36	1.86
667028--667053	13	2.0	13	100	0	52	30	15	15	38	1.88
669526--669601	27	2.8	28	92	6	120	25	32	21	21	1.97
669586--669754	52	3.3	50	74	14	164	30	25	10	33	1.90
669417--669754	104	3.2	103	72	11	308	30	25	11	31	1.92
669737--669813	28	2.8	28	87	0	100	23	33	19	23	1.97
669412--669862	212	2.1	210	86	4	620	29	26	12	31	1.93
669476--669892	107	3.9	107	74	8	339	28	27	13	30	1.95
671781--672021	123	2.0	123	98	0	464	41	19	20	18	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
674265--674312	21	2.3	20	83	13	62	45	18	14	20	1.85
674276--674316	21	1.9	22	90	5	66	43	17	17	21	1.87
675323--675372	19	2.6	19	100	0	100	36	20	12	32	1.89
675880--676001	11	11.0	11	76	14	101	85	10	3	0	0.76
675880--676001	40	3.1	41	80	9	139	85	10	3	0	0.76
675880--675989	1	110.0	1	74	0	85	86	9	3	0	0.73
677446--678034	57	10.2	57	81	6	618	31	30	16	21	1.95
677446--678060	115	5.3	114	85	4	677	31	30	16	21	1.95
677439--678034	173	3.4	173	89	2	867	30	30	16	22	1.95
677439--678034	87	6.9	85	87	2	751	30	30	16	22	1.95
677990--678070	28	2.8	28	80	12	76	38	25	17	18	1.92
678012--678070	31	2.0	27	84	12	73	35	27	18	18	1.94
678171--678450	49	5.8	49	75	11	254	23	25	17	33	1.96
678082--678294	42	4.9	43	83	8	234	26	25	17	30	1.97
678129--678352	92	2.5	91	91	2	351	25	23	18	33	1.97
679181--679205	13	1.9	13	100	0	50	36	16	16	32	1.90
682999--683042	23	1.9	23	81	9	54	45	4	2	47	1.35
683402--683452	20	2.7	19	84	6	59	54	3	3	37	1.37
683713--683949	120	2.0	121	86	4	338	39	15	4	40	1.66
684094--684120	14	1.9	14	100	0	54	74	0	0	25	0.83
685106--685160	27	2.0	27	83	13	69	43	0	0	56	0.99
686105--686152	24	2.0	24	95	0	87	27	16	6	50	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
686820--688383	49	31.9	49	78	10	1402	32	17	25	24	1.97
686925--688383	193	7.5	192	83	8	1402	32	17	25	24	1.97
686813--688384	543	2.9	542	89	4	2241	32	17	25	24	1.96
688420--688615	27	6.9	27	78	12	187	31	13	31	23	1.93
688478--688594	62	1.9	62	87	3	173	31	14	32	21	1.93
688425--688651	89	2.6	88	80	8	245	31	14	30	23	1.94
688603--688776	31	5.6	31	75	11	144	30	14	28	26	1.95
688419--688678	117	2.2	116	81	6	285	31	13	30	24	1.94
688541--688777	31	7.9	31	75	8	136	29	14	30	26	1.95
690049--690095	13	3.7	13	91	5	78	0	0	17	82	0.66
690052--690094	12	3.5	12	79	17	52	0	0	16	83	0.64
690044--690097	25	2.2	24	93	3	90	0	0	18	81	0.69
696761--696855	19	5.6	19	65	27	79	35	16	13	33	1.88
696753--696855	32	3.2	32	91	0	170	35	17	13	33	1.89
698059--698106	24	2.0	24	95	0	87	27	16	6	50	1.69
699991--700028	20	1.9	20	100	0	76	31	34	10	23	1.89
701793--701827	17	2.0	18	88	5	54	42	5	34	17	1.73
705762--705814	20	2.7	19	85	11	63	30	16	13	39	1.87
708351--708390	13	3.1	13	92	0	71	40	12	15	32	1.84
709160--709226	33	2.0	33	88	0	98	34	11	13	40	1.81
709180--709204	13	1.9	13	100	0	50	36	16	16	32	1.90
709267--709291	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
723241--723270	3	10.0	3	92	0	51	30	0	36	33	1.58
727800--727828	13	2.2	13	100	0	58	27	13	17	41	1.87
730300--730413	20	5.6	20	69	19	65	35	16	17	30	1.92
731742--731773	16	2.0	16	93	0	55	50	9	0	40	1.35
731769--731836	32	2.2	32	86	2	93	54	5	5	33	1.49
738450--738562	25	4.3	25	84	8	127	23	11	7	57	1.60
738448--738562	27	4.3	26	87	7	151	22	11	7	58	1.58
738449--738562	53	2.1	54	88	3	169	22	11	7	57	1.59
741814--741868	28	1.9	30	89	10	89	70	0	1	27	0.97
741827--741862	12	3.0	12	92	8	56	75	0	0	25	0.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13