genome.fa.s184.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold184
Parameters: 2 7 7 80 10 50 1000
Length:  2218657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  7  of  13  ( 1455 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1088982--1089146	84	2.0	84	82	7	201	24	19	3	52	1.62
1089535--1089576	21	2.0	21	85	0	57	23	28	4	42	1.74
1091257--1091302	23	2.0	23	83	8	58	34	10	28	26	1.90
1091293--1091347	21	2.5	22	88	5	85	41	10	20	27	1.85
1091390--1091527	53	2.6	53	94	1	240	26	17	18	36	1.93
1091587--1091627	21	2.0	21	85	9	57	39	9	12	39	1.76
1092852--1092895	22	2.0	23	86	4	63	36	27	11	25	1.90
1093682--1093716	17	2.1	17	94	0	61	62	5	2	28	1.32
1093948--1094108	36	4.4	37	73	8	107	42	20	6	30	1.76
1093967--1094044	38	2.0	40	87	5	115	47	17	5	29	1.69
1094016--1094220	35	5.7	35	72	6	126	40	19	9	30	1.83
1094527--1094576	25	1.9	27	84	8	68	38	10	20	32	1.85
1095916--1095958	9	4.8	9	82	8	52	6	9	0	83	0.80
1095914--1095966	20	2.8	20	85	5	74	9	11	0	79	0.94
1095915--1095948	9	3.8	9	92	0	59	8	8	0	82	0.85
1105134--1105262	52	2.5	52	90	0	204	27	17	20	35	1.94
1105134--1105280	52	2.8	52	87	2	179	28	16	20	34	1.94
1105338--1105403	19	3.7	19	68	25	63	37	16	13	31	1.88
1105336--1105401	33	2.0	33	91	2	107	36	16	13	33	1.88
1106119--1106235	61	1.9	61	91	0	189	22	29	12	35	1.91
1109375--1109444	27	2.6	27	86	0	86	25	35	18	20	1.95
1113288--1113412	52	2.4	52	97	0	232	27	17	18	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1113288--1113432	52	2.8	52	92	2	202	29	17	17	35	1.93
1113418--1113445	13	2.2	13	100	0	56	39	17	14	28	1.89
1113486--1113552	33	2.0	33	85	0	89	40	13	11	34	1.81
1114181--1114232	17	2.9	18	81	16	72	21	15	25	38	1.92
1114344--1114628	43	5.7	52	78	11	217	34	16	23	25	1.95
1114398--1114628	92	2.4	93	86	7	304	33	16	23	25	1.96
1114341--1114636	49	6.0	49	78	11	275	34	15	23	25	1.95
1114397--1114636	95	2.5	94	85	8	306	34	16	23	25	1.95
1114682--1114779	28	3.4	28	88	2	133	17	16	29	36	1.92
1114682--1115130	30	14.6	30	71	15	134	29	14	28	27	1.95
1114822--1115031	29	6.8	30	70	14	95	31	15	30	22	1.95
1114730--1115035	128	2.4	128	95	0	549	31	14	29	24	1.95
1114986--1115063	27	2.8	27	84	5	93	15	20	33	30	1.94
1114948--1115126	29	6.0	29	77	10	155	26	16	29	27	1.97
1116506--1116575	1	70.0	1	73	0	59	0	0	12	87	0.55
1116506--1116577	21	3.5	20	80	14	83	0	0	13	86	0.58
1116508--1116575	15	4.4	15	87	12	86	0	0	13	86	0.56
1116509--1116575	26	2.6	25	92	7	107	0	0	13	86	0.57
1130409--1130533	52	2.4	52	89	2	180	30	16	18	34	1.93
1130438--1130554	52	2.2	52	88	5	166	33	17	17	30	1.94
1130573--1130639	33	2.0	33	85	0	89	40	13	11	34	1.81
1134172--1134222	20	2.5	21	93	0	79	27	13	13	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1134242--1134315	20	3.7	19	87	7	103	28	16	13	41	1.86
1136667--1136797	51	2.6	51	85	5	180	29	27	12	30	1.93
1136719--1137017	79	3.8	78	77	7	291	28	25	14	32	1.94
1136719--1137017	157	1.9	158	80	3	352	28	25	14	32	1.94
1138703--1138798	19	5.5	16	70	25	70	60	0	1	38	1.04
1138703--1138798	14	6.5	15	65	23	53	60	0	1	38	1.04
1138704--1138834	36	3.6	37	77	11	121	58	0	1	39	1.07
1139764--1139800	18	2.1	18	89	0	56	75	0	21	2	0.92
1139816--1139855	19	2.1	19	100	0	80	32	0	5	62	1.17
1139947--1140009	13	5.0	12	77	13	56	33	1	1	63	1.13
1144144--1144168	2	12.5	2	100	0	50	48	0	0	52	1.00
1144886--1144922	19	1.9	19	88	0	56	45	5	5	43	1.49
1146115--1146166	19	2.7	19	81	3	59	42	17	13	26	1.86
1154943--1154967	13	1.9	13	100	0	50	32	16	16	36	1.90
1154923--1154987	33	2.0	33	87	6	96	30	16	13	38	1.88
1155015--1155052	20	1.9	20	88	0	58	31	21	7	39	1.82
1157895--1158015	51	2.4	51	86	2	174	28	11	10	49	1.72
1158893--1158933	20	2.0	20	90	0	64	24	14	9	51	1.72
1173530--1174027	28	17.6	28	79	5	432	28	27	16	26	1.97
1175139--1175247	50	2.2	50	89	0	164	30	17	10	42	1.82
1183870--1183907	20	1.9	20	100	0	76	31	18	10	39	1.85
1183872--1183922	20	2.6	20	87	3	68	37	17	11	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1190040--1190076	19	1.9	19	88	0	56	43	2	13	40	1.58
1189669--1190118	167	2.7	167	80	6	439	52	7	9	30	1.61
1197862--1197935	20	3.7	20	83	7	105	39	12	13	35	1.82
1198458--1199395	57	16.3	58	85	3	1191	23	16	30	29	1.96
1198458--1199395	29	32.5	29	85	3	1191	23	16	30	29	1.96
1198449--1199395	86	10.9	86	85	4	1136	23	16	30	29	1.96
1200627--1200668	18	2.3	19	87	4	59	4	2	9	83	0.88
1200626--1200685	19	3.3	19	82	11	65	6	1	6	85	0.82
1200628--1200684	8	6.9	8	80	13	62	7	1	7	84	0.85
1200614--1200685	11	6.5	11	76	6	56	6	2	6	83	0.90
1212436--1212510	20	3.8	19	78	7	87	41	12	13	33	1.81
1212433--1212510	40	2.0	39	89	2	120	41	12	12	33	1.82
1214997--1215069	29	2.5	30	86	6	96	41	16	13	28	1.87
1220184--1220248	15	4.3	15	80	7	69	26	13	3	56	1.52
1220192--1220248	30	1.9	30	85	7	80	29	14	1	54	1.50
1220796--1220875	20	4.0	20	80	6	99	32	15	12	40	1.84
1223325--1223387	28	2.2	28	83	5	83	25	33	14	26	1.94
1223370--1223488	51	2.3	51	89	0	184	29	28	12	29	1.93
1223421--1223683	79	3.3	79	81	0	303	27	23	13	34	1.93
1223421--1223717	79	3.8	78	79	6	222	28	23	13	34	1.93
1224241--1224294	20	2.7	20	88	0	81	42	12	14	29	1.83
1224345--1224370	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1224325--1224392	33	2.1	32	91	2	109	35	14	14	35	1.87
1229879--1229924	21	2.2	21	84	7	58	26	30	4	39	1.75
1231729--1231754	13	2.0	13	100	0	52	38	15	15	30	1.88
1235112--1235137	13	2.0	13	100	0	52	30	15	15	38	1.88
1236162--1238132	29	67.1	29	83	7	2229	21	17	32	28	1.96
1236235--1238132	615	3.0	604	83	7	2258	21	17	32	28	1.96
1239360--1239409	1	50.0	1	79	0	55	0	2	8	90	0.54
1239360--1239409	11	4.4	11	87	9	73	0	2	8	90	0.54
1239362--1239408	24	2.0	24	95	0	85	0	2	8	89	0.57
1253406--1253480	20	3.8	20	78	7	89	40	13	13	33	1.83
1253403--1253480	40	2.0	39	87	2	111	39	14	12	33	1.84
1268686--1268766	20	4.2	19	78	9	83	85	11	1	2	0.76
1268689--1268775	29	3.0	28	85	11	106	85	11	1	2	0.76
1268688--1268775	7	12.4	7	79	16	85	85	11	1	2	0.75
1268686--1268775	13	6.5	13	79	14	69	84	12	1	2	0.77
1268688--1268760	1	73.0	1	77	0	65	87	8	1	2	0.69
1270216--1270742	30	17.9	29	88	4	734	29	30	16	24	1.97
1270216--1270802	59	10.0	58	88	3	743	29	29	17	24	1.97
1270216--1270742	89	6.0	90	87	4	759	29	30	16	24	1.97
1270805--1270983	43	4.0	43	86	8	259	25	23	18	32	1.97
1270805--1271041	43	5.0	49	81	12	255	24	24	16	34	1.96
1270805--1271036	92	2.5	94	89	2	351	25	24	17	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1270937--1271037	52	1.9	53	89	2	159	24	24	14	35	1.94
1272418--1272474	13	3.9	13	76	24	60	35	14	17	33	1.90
1272398--1272495	32	3.0	32	96	1	178	34	12	17	35	1.87
1272396--1272493	19	5.8	18	71	28	90	33	12	17	36	1.87
1277958--1277996	13	3.0	13	88	0	60	30	17	15	35	1.91
1278129--1278168	20	2.0	21	85	14	57	32	22	0	45	1.53
1279798--1279835	19	2.0	19	100	0	76	42	0	36	21	1.53
1279865--1279904	21	1.9	21	84	0	53	32	2	35	30	1.71
1280470--1280523	20	2.7	20	88	0	81	42	12	14	29	1.83
1280556--1280593	17	2.1	18	85	9	51	31	13	18	36	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13