genome.fa.s184.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold184
Parameters: 2 7 7 80 10 50 1000
Length:  2218657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  10  of  13  ( 1455 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1618688--1618980	69	4.3	69	76	10	269	30	29	16	24	1.96
1618612--1619144	67	7.8	66	71	14	298	30	29	15	23	1.96
1622779--1622849	35	2.1	34	86	7	99	50	2	8	38	1.47
1628074--1628151	21	3.7	21	86	3	104	38	12	14	34	1.84
1628262--1628287	13	2.0	13	100	0	52	30	15	15	38	1.88
1628827--1628855	10	3.0	10	95	5	51	79	20	0	0	0.74
1630649--1630782	51	2.6	52	83	5	164	33	24	9	32	1.88
1630773--1630841	28	2.5	28	81	11	81	28	34	13	23	1.92
1630828--1630993	52	3.2	51	78	2	179	31	24	9	34	1.87
1630981--1631052	28	2.6	28	86	8	94	22	36	18	23	1.95
1630660--1631097	211	2.1	211	87	2	630	30	25	12	31	1.92
1633396--1633451	22	2.5	23	97	2	105	62	8	10	17	1.52
1634362--1634436	20	3.8	20	80	3	80	40	12	13	34	1.81
1634359--1634436	40	2.0	39	87	2	111	39	12	12	34	1.82
1634912--1636126	29	42.2	29	90	4	1849	22	17	31	28	1.96
1634912--1636128	115	10.6	116	92	3	1860	22	17	32	28	1.96
1634912--1636129	86	14.1	86	91	3	1868	22	17	32	28	1.96
1637361--1637424	12	5.6	11	85	12	85	0	1	10	87	0.61
1637361--1637423	1	63.0	1	77	0	63	0	1	9	88	0.57
1637349--1637423	23	3.3	22	80	14	80	1	2	9	86	0.72
1637344--1637420	18	4.1	18	83	11	84	2	3	9	84	0.84
1637368--1637423	13	4.4	13	86	2	78	0	0	10	89	0.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1637349--1637422	10	7.8	10	77	8	75	1	2	9	86	0.73
1637368--1637424	23	2.4	24	94	2	98	0	0	12	87	0.54
1650471--1650526	22	2.5	23	97	2	105	62	8	10	17	1.52
1651437--1651511	20	3.8	20	78	3	71	40	13	13	33	1.83
1651434--1651511	40	2.0	39	84	2	102	39	14	12	33	1.84
1654086--1654110	13	1.9	13	100	0	50	32	20	16	32	1.94
1654066--1654129	32	2.0	33	90	3	103	28	15	15	40	1.88
1807518--1807906	79	4.9	78	80	8	414	26	24	13	35	1.93
1807518--1807926	158	2.6	157	82	4	484	26	24	13	35	1.92
1809970--1810003	4	8.5	4	93	0	59	23	2	0	73	0.97
1820106--1820152	16	3.0	16	84	6	69	85	12	2	0	0.70
1820106--1820147	15	2.7	15	92	3	66	85	14	0	0	0.59
1821146--1821577	61	7.1	60	84	4	530	26	27	17	28	1.98
1824584--1828895	30	146.9	28	72	10	1739	28	31	17	22	1.97
1824596--1824822	28	7.9	28	73	14	126	26	32	17	23	1.96
1824969--1825038	31	2.3	31	79	0	77	28	28	21	21	1.99
1825417--1825486	32	2.3	29	82	7	77	28	27	18	25	1.98
1825610--1825712	31	3.4	31	80	2	118	30	31	22	16	1.96
1825791--1826157	115	3.2	115	76	3	265	28	32	17	20	1.96
1826291--1826368	31	2.5	31	83	4	86	24	25	26	23	2.00
1826610--1826740	31	4.4	31	77	6	126	29	33	20	16	1.94
1827204--1828666	58	25.1	58	74	8	890	28	30	17	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1824579--1828895	144	29.4	143	70	11	1848	28	31	17	22	1.97
1825137--1827769	203	12.8	202	70	12	762	28	31	17	22	1.97
1827215--1828335	88	12.9	88	70	12	280	27	29	17	24	1.98
1828351--1828555	31	6.8	31	73	10	133	29	31	18	20	1.96
1828417--1828555	61	2.3	59	80	7	145	27	31	19	21	1.97
1825136--1828894	59	64.0	58	71	10	766	28	31	17	22	1.97
1828739--1828880	31	4.7	30	75	7	126	28	35	19	16	1.94
1828801--1828895	28	3.3	29	79	7	95	29	34	18	16	1.94
1832020--1832074	20	2.8	20	88	5	76	38	12	16	32	1.86
1832393--1834463	30	70.2	29	70	12	800	28	30	17	23	1.97
1832722--1832780	29	2.1	28	81	9	66	32	30	15	22	1.94
1833178--1833342	56	2.9	57	79	9	165	28	32	14	24	1.94
1833328--1833399	29	2.5	29	86	8	110	25	34	16	23	1.95
1833055--1833390	143	2.3	144	80	6	353	29	31	14	23	1.95
1833493--1833569	31	2.5	31	84	0	109	24	28	24	22	1.99
1833602--1833685	29	2.9	29	82	7	100	28	27	16	27	1.97
1833701--1833809	31	3.6	30	71	22	93	25	32	18	23	1.97
1832881--1834465	59	26.9	57	68	13	257	28	30	17	23	1.97
1834167--1834262	31	3.1	30	84	3	120	31	31	19	17	1.95
1834107--1834255	61	2.5	58	78	10	158	29	34	18	17	1.94
1833660--1834463	386	2.1	386	82	4	980	27	29	18	24	1.98
1835059--1835255	72	2.7	71	75	11	195	30	2	11	55	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1835186--1835221	17	2.1	18	89	5	56	38	0	11	50	1.38
1835357--1835639	137	2.0	143	82	5	355	31	1	14	52	1.51
1835329--1836128	74	11.1	72	70	15	379	30	1	13	53	1.50
1835809--1836102	73	4.2	69	77	16	196	29	1	13	55	1.46
1835061--1836109	439	2.4	432	82	8	1251	30	1	13	53	1.50
1836239--1836461	72	3.0	72	85	4	252	33	1	9	56	1.40
1836337--1836444	33	3.1	33	65	14	81	37	1	7	53	1.40
1836404--1836575	87	2.0	87	82	6	215	33	2	11	53	1.49
1839619--1839980	79	4.6	78	80	9	396	26	25	13	34	1.93
1839583--1839971	158	2.5	158	85	4	498	26	23	13	35	1.93
1839581--1839983	79	5.1	77	77	11	388	26	23	13	36	1.92
1842040--1842073	4	8.5	4	93	0	59	23	2	0	73	0.97
1852177--1852213	14	2.6	14	91	4	56	86	13	0	0	0.57
1852175--1852220	18	2.5	17	83	13	56	86	10	2	0	0.64
1852175--1852220	19	2.4	18	82	7	56	86	10	2	0	0.64
1853212--1853643	61	7.1	60	83	5	514	26	26	17	29	1.98
1853212--1853643	122	3.6	120	84	5	566	26	26	17	29	1.98
1856651--1865526	30	303.8	28	70	12	1814	29	30	17	22	1.97
1856663--1856889	28	7.9	28	73	14	126	26	32	16	24	1.96
1856628--1856977	144	2.4	145	81	10	371	28	30	16	24	1.97
1857036--1857105	31	2.3	31	79	0	77	28	28	21	21	1.99
1857484--1857553	32	2.3	29	82	7	77	28	27	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1857677--1857779	31	3.4	31	80	2	118	30	31	22	16	1.96
1857757--1858014	58	4.4	59	76	12	155	29	29	16	24	1.96
1857773--1859729	144	13.5	146	71	13	457	29	31	17	21	1.96
1857609--1858447	411	2.0	412	84	5	1081	28	31	17	21	1.97
1857974--1858145	88	1.9	89	81	8	208	29	31	18	20	1.96
1858078--1858190	31	3.7	30	82	3	118	30	32	19	16	1.94
1858388--1858528	75	1.9	77	85	5	198	33	27	17	21	1.96
1858481--1861249	29	94.7	29	72	10	1002	30	30	17	21	1.96
1856626--1865594	59	152.4	58	71	11	4039	29	30	17	22	1.97
1861298--1861402	28	3.6	28	85	6	120	29	31	20	19	1.96
1856626--1861408	30	162.4	29	72	10	2208	29	30	17	21	1.97
1861409--1865594	30	142.9	29	72	10	2182	29	29	17	22	1.97
1862777--1862892	31	3.8	31	73	4	112	31	29	20	18	1.97
1865458--1865556	28	3.5	28	78	8	76	29	27	23	20	1.99
1868822--1868906	19	4.7	18	70	27	65	35	15	11	37	1.84
1868816--1868886	32	2.2	32	94	0	124	36	15	11	36	1.83
1868841--1868865	13	1.9	13	100	0	50	32	16	16	36	1.90
1869201--1873883	59	80.0	57	69	11	1055	29	30	17	22	1.97
1869206--1869574	173	2.1	173	84	2	481	32	29	15	21	1.95
1869177--1874124	29	168.8	29	73	9	2628	29	30	17	22	1.97
1870755--1870826	30	2.4	30	85	2	90	34	37	15	12	1.85
1869201--1873883	144	32.0	143	70	11	1198	29	30	17	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1871549--1871626	31	2.5	31	83	4	86	24	25	26	23	2.00
1871868--1871998	31	4.4	31	77	6	126	29	33	20	16	1.94
1871959--1872204	60	4.2	60	81	6	188	28	34	15	21	1.94
1871975--1872143	90	1.9	85	87	8	241	28	34	14	22	1.94
1877259--1877313	20	2.8	20	88	5	76	38	12	16	32	1.86
1877630--1880287	30	90.5	30	71	10	1030	28	30	17	23	1.97
1877630--1880287	59	45.3	60	70	12	767	28	30	17	23	1.97
1877962--1878020	29	2.1	28	81	9	66	32	30	15	22	1.94
1878023--1878097	29	2.6	29	79	12	82	34	30	20	14	1.92
1878143--1878304	89	1.8	87	80	10	195	27	29	19	24	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13