genome.fa.s202.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold202
Parameters: 2 7 7 80 10 50 1000
Length:  2706578

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  11  of  16  ( 1899 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1815176--1815216	17	2.4	17	83	4	55	68	0	0	31	0.90
1815361--1815484	43	2.8	45	77	20	134	44	2	0	53	1.13
1815368--1815468	28	3.6	27	73	12	80	43	1	0	54	1.11
1815399--1815438	20	2.0	20	85	9	55	50	0	0	50	1.00
1815419--1815505	33	2.6	33	77	16	92	44	1	0	54	1.07
1815418--1815505	32	2.7	32	81	12	97	45	1	0	53	1.07
1816046--1816091	18	2.5	17	86	13	56	52	0	0	47	1.00
1816821--1816854	5	6.8	5	96	0	59	82	2	0	14	0.79
1818200--1818268	34	2.0	34	100	0	138	56	14	5	23	1.60
1819862--1819895	18	1.9	17	88	5	50	35	0	0	64	0.94
1820058--1820099	16	2.6	17	78	21	54	38	0	0	61	0.96
1820087--1820139	19	2.8	20	91	8	92	49	0	0	50	1.00
1820252--1820302	26	2.0	26	92	7	86	47	0	0	52	1.00
1820481--1820548	24	2.9	23	73	16	68	58	0	1	39	1.07
1820921--1821015	15	6.8	13	69	22	52	57	1	0	41	1.05
1820922--1820967	14	3.1	15	81	12	51	58	0	0	41	0.98
1822020--1822069	25	2.0	26	88	4	75	38	2	4	56	1.30
1822488--1822521	17	1.9	18	94	5	61	41	2	0	55	1.15
1822474--1822503	13	2.3	13	94	0	51	53	0	0	46	1.00
1822759--1822800	11	3.8	11	78	9	50	64	0	0	35	0.94
1823376--1823449	17	3.6	19	74	23	62	40	0	1	58	1.07
1823412--1823449	17	2.2	18	95	4	69	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1823376--1823452	20	3.7	20	76	19	77	41	0	1	57	1.07
1823451--1823488	16	2.5	15	84	16	51	28	2	2	65	1.19
1824377--1824427	15	3.3	15	76	10	50	41	0	5	52	1.25
1824922--1824972	5	10.4	5	77	12	52	21	1	1	74	1.02
1824924--1824963	19	2.2	19	90	4	64	22	0	2	75	0.93
1824914--1825001	29	3.0	28	80	8	86	28	1	2	68	1.09
1825582--1825608	6	4.5	6	100	0	54	85	0	0	14	0.61
1826316--1826353	2	19.5	2	89	5	60	50	2	0	47	1.15
1826884--1826987	52	2.0	52	83	5	129	45	2	6	45	1.45
1827866--1827916	3	17.0	3	100	0	102	33	0	0	66	0.92
1827960--1827993	3	11.3	3	93	0	59	29	0	0	70	0.87
1828121--1828189	19	3.7	19	88	7	99	42	0	1	56	1.08
1832357--1832549	102	1.9	101	87	4	282	27	13	8	50	1.70
1835353--1835381	2	14.5	2	100	0	58	48	0	0	51	1.00
1839060--1839109	18	2.7	19	77	22	61	32	0	0	68	0.90
1839049--1839109	9	6.3	10	70	25	51	31	0	1	67	1.01
1840062--1840152	15	6.5	14	70	23	50	40	1	2	56	1.19
1840109--1840156	15	3.3	15	83	13	64	39	0	0	60	0.97
1840483--1840508	13	2.0	13	100	0	52	7	15	0	76	0.99
1841143--1841177	14	2.5	14	86	13	54	22	0	2	74	0.95
1841352--1841392	12	3.4	12	81	18	50	36	0	4	58	1.20
1843038--1843119	41	2.0	41	100	0	164	29	19	17	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1849791--1849824	15	2.3	15	94	0	59	41	5	0	52	1.25
1850324--1850369	17	2.7	18	76	6	51	58	0	0	41	0.98
1851964--1852003	21	1.9	21	84	0	53	50	0	2	47	1.14
1852081--1852123	22	2.0	21	81	4	50	53	13	6	25	1.65
1854110--1854146	14	2.4	16	91	8	60	21	8	5	64	1.40
1858031--1858081	11	4.1	12	75	24	52	58	0	0	41	0.98
1858031--1858085	20	2.8	20	71	23	55	60	0	0	40	0.97
1858038--1858113	16	4.4	16	76	12	62	57	0	0	42	0.98
1865511--1865547	17	2.2	17	90	0	56	45	10	5	37	1.62
1866525--1866582	24	2.4	25	80	13	77	72	3	6	17	1.21
1866816--1866856	19	2.1	20	86	13	59	60	0	9	29	1.28
1867001--1867040	20	2.0	21	85	14	57	62	5	5	27	1.37
1868840--1868868	6	5.0	6	91	8	51	17	0	0	82	0.66
1868840--1868868	11	2.5	12	94	5	51	17	0	0	82	0.66
1869919--1869949	15	2.1	15	94	5	55	70	0	0	29	0.87
1869919--1869953	16	2.3	15	90	5	52	71	0	0	28	0.86
1870042--1870106	16	4.1	16	76	11	71	30	0	4	64	1.14
1870040--1870106	31	2.2	31	83	5	82	31	0	4	64	1.14
1870057--1870115	31	1.9	30	83	10	75	32	1	3	62	1.21
1870668--1870701	15	2.3	15	94	0	59	44	2	0	52	1.16
1870692--1870736	16	2.8	16	83	10	56	42	0	2	55	1.12
1871200--1871260	26	2.3	27	72	13	63	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1871223--1871274	22	2.4	22	80	6	61	59	0	0	40	0.97
1872051--1872099	22	2.2	22	80	16	57	44	2	2	51	1.24
1872705--1872745	19	2.1	19	90	4	64	56	0	7	36	1.27
1872710--1872745	19	1.9	19	94	5	65	58	0	5	36	1.22
1879676--1879917	122	2.0	122	99	0	475	36	10	12	40	1.78
1880670--1880715	19	2.4	19	96	0	83	28	15	15	41	1.87
1885176--1885229	22	2.5	21	91	5	90	18	9	9	62	1.51
1885182--1885229	22	2.2	22	100	0	96	16	8	8	66	1.42
1885176--1885236	22	2.9	21	85	7	61	21	9	9	59	1.58
1891334--1891376	22	1.9	23	85	4	61	72	11	11	4	1.27
1892736--1893282	27	20.0	27	91	1	833	22	32	14	29	1.94
1892736--1893282	82	6.7	82	91	1	855	22	32	14	29	1.94
1893275--1893695	32	13.9	32	89	3	397	29	34	18	17	1.94
1893275--1893978	64	11.9	61	85	5	671	28	33	18	19	1.96
1893275--1893978	96	7.9	92	84	7	616	28	33	18	19	1.96
1892773--1893978	28	42.2	28	87	4	746	26	33	16	23	1.96
1892773--1893978	55	21.1	56	85	5	746	26	33	16	23	1.96
1895575--1895628	22	2.5	21	91	5	90	18	9	9	62	1.51
1895581--1895628	22	2.2	22	100	0	96	16	8	8	66	1.42
1895575--1895635	22	2.9	21	85	7	61	21	9	9	59	1.58
1901236--1901279	17	2.6	16	79	10	52	31	0	4	63	1.14
1901314--1901350	19	1.9	19	88	0	56	56	0	8	35	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1901612--1901676	31	2.1	31	91	0	103	47	1	6	44	1.37
1901638--1901716	38	2.1	36	90	4	122	49	0	3	46	1.19
1901702--1901748	14	3.4	14	76	2	51	51	0	0	48	1.00
1902016--1902067	21	2.6	20	76	8	61	46	1	0	51	1.12
1902041--1902108	29	2.4	28	85	7	102	50	1	0	48	1.10
1902055--1902099	13	3.2	13	77	17	54	40	0	0	60	0.97
1902059--1902104	15	3.1	15	70	17	51	50	0	0	50	1.00
1904624--1904692	35	2.0	35	94	0	120	31	2	13	52	1.55
1909755--1909806	26	2.0	26	85	7	70	48	1	5	44	1.38
1909757--1909813	26	2.2	26	81	6	62	52	3	5	38	1.41
1909942--1909989	15	3.1	15	80	16	62	54	12	0	33	1.38
1910815--1910866	20	2.5	21	77	22	56	48	1	1	48	1.24
1911240--1911282	20	2.2	20	91	0	68	37	4	2	55	1.33
1911595--1911619	2	12.5	2	100	0	50	48	0	0	52	1.00
1911732--1911771	15	2.7	15	88	0	53	42	2	7	47	1.45
1913178--1913226	18	2.6	19	77	9	55	44	4	4	46	1.41
1913878--1913974	28	3.4	27	75	12	88	22	3	12	61	1.44
1913942--1914010	34	2.0	36	88	5	106	20	4	10	65	1.40
1913920--1914048	28	4.3	29	77	14	109	21	2	9	66	1.31
1915462--1915505	20	2.2	20	84	12	54	36	0	15	47	1.46
1915956--1916015	10	5.9	10	76	9	50	26	1	1	70	1.07
1915956--1916000	21	2.1	21	87	0	63	24	2	2	71	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1915956--1916018	11	6.1	11	75	12	53	26	1	1	69	1.06
1925582--1925635	16	3.3	16	78	2	63	37	31	18	12	1.89
1925623--1925678	23	2.4	23	90	0	85	37	23	19	19	1.94
1926473--1926578	16	6.6	16	79	9	83	38	25	17	17	1.92
1926473--1926573	32	3.1	32	79	9	107	38	24	17	18	1.93
1939230--1939297	27	2.6	25	75	9	64	51	0	1	47	1.09
1940268--1940294	14	1.9	14	100	0	54	62	0	0	37	0.95
1943042--1943085	19	2.2	19	84	12	52	36	2	0	61	1.09
1945196--1945240	22	2.1	22	87	4	65	57	0	0	42	0.98
1945981--1946023	22	2.0	22	90	9	70	34	0	0	65	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16