genome.fa.s202.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold202
Parameters: 2 7 7 80 10 50 1000
Length:  2706578

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  16  of  16  ( 1899 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2549215--2549239	13	1.9	13	100	0	50	32	16	16	36	1.90
2549196--2549258	32	2.0	32	96	0	117	36	15	12	34	1.86
2549701--2550673	55	17.6	54	88	6	1308	21	20	29	28	1.98
2551652--2551699	9	5.6	8	80	11	51	0	4	8	87	0.66
2551662--2551717	12	4.4	12	84	6	67	0	5	8	85	0.73
2551651--2551717	12	5.0	14	78	17	63	0	7	8	83	0.81
2551652--2551702	17	3.0	17	85	5	68	0	3	7	88	0.63
2564169--2564339	51	3.3	51	77	4	189	33	11	25	29	1.91
2564322--2564397	27	2.8	28	88	6	102	21	21	34	23	1.97
2566846--2566912	33	2.0	33	85	0	89	44	16	13	25	1.84
2566932--2566999	19	3.9	18	76	23	83	38	14	11	35	1.83
2566954--2566978	13	1.9	13	100	0	50	32	16	16	36	1.90
2566935--2566997	32	2.0	32	96	0	117	36	15	12	34	1.86
2567035--2567095	21	3.1	19	79	11	77	32	13	16	37	1.87
2568554--2568625	28	2.6	28	86	4	92	25	22	20	31	1.98
2583894--2583957	17	4.1	15	76	15	58	76	3	7	12	1.11
2583923--2583957	17	2.1	17	94	0	61	82	2	5	8	0.91
2584957--2585016	14	4.4	14	91	2	95	30	31	6	31	1.83
2584955--2585018	28	2.3	27	94	5	119	29	29	6	34	1.82
2585690--2585780	28	3.1	30	84	7	123	24	31	12	31	1.92
2585783--2585964	32	5.7	31	77	3	159	32	28	18	20	1.96
2585782--2585958	64	2.8	62	80	5	185	33	28	16	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2586002--2586248	52	4.8	52	80	1	219	27	21	14	36	1.92
2586197--2586401	61	3.4	61	78	2	209	24	25	11	37	1.90
2586829--2586893	19	3.3	19	64	19	51	24	10	13	50	1.74
2586815--2586893	41	1.9	41	100	0	158	25	12	13	48	1.78
2587428--2587685	85	3.2	79	76	13	231	33	22	8	34	1.86
2587644--2587714	27	2.6	27	95	0	124	33	35	5	25	1.79
2598793--2598960	71	2.4	70	79	4	185	26	19	11	42	1.85
2599013--2599203	72	2.7	72	85	6	253	28	22	8	39	1.84
2602301--2602497	104	1.9	104	89	2	306	29	17	17	35	1.93
2602301--2602477	52	3.4	52	96	0	318	28	17	17	36	1.93
2602486--2602510	13	1.9	13	100	0	50	36	16	16	32	1.90
2602575--2602599	13	1.9	13	100	0	50	32	16	16	36	1.90
2602553--2602619	33	2.0	33	88	0	98	40	13	11	34	1.81
2602936--2603112	72	2.5	70	83	8	216	25	19	14	40	1.89
2609962--2610005	22	2.0	22	82	8	54	47	0	0	52	1.00
2610233--2610272	21	1.9	21	89	0	62	40	5	0	55	1.22
2610553--2610595	21	2.1	20	91	4	68	46	0	0	53	1.00
2611648--2611704	21	2.8	21	84	5	64	42	1	0	56	1.10
2612444--2612471	10	2.8	10	100	0	56	57	0	0	42	0.99
2616049--2616110	25	2.5	24	79	7	70	40	1	0	58	1.08
2616462--2616495	2	17.0	2	100	0	68	50	0	0	50	1.00
2620652--2620678	13	2.1	13	100	0	54	29	14	14	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2620633--2620697	32	2.0	32	87	3	94	29	13	13	43	1.83
2620663--2620717	19	2.8	19	83	8	67	32	14	12	40	1.84
2620763--2620792	13	2.3	13	94	0	51	33	16	10	40	1.82
2622403--2622433	15	2.1	15	93	0	53	45	0	25	29	1.54
2626661--2626715	20	2.8	20	88	5	76	40	12	14	32	1.84
2627543--2628007	43	9.9	49	76	11	385	32	17	25	24	1.97
2627645--2627967	92	3.5	92	93	0	538	32	18	25	23	1.97
2627922--2627989	21	3.2	21	62	25	52	30	19	26	23	1.98
2628033--2628275	29	8.4	30	81	7	220	21	16	30	30	1.96
2628033--2628275	57	4.2	58	78	8	246	21	16	30	30	1.96
2629723--2629788	1	66.0	1	75	0	60	0	0	12	87	0.53
2629705--2629788	20	4.4	18	78	15	80	1	0	14	84	0.68
2629720--2629788	16	4.6	15	84	12	97	0	0	13	86	0.56
2629720--2629788	28	2.4	28	90	2	102	0	0	13	86	0.56
2643722--2643747	13	2.0	13	100	0	52	38	15	15	30	1.88
2643940--2644007	19	3.9	19	76	21	76	36	11	13	38	1.81
2643961--2643985	13	1.9	13	100	0	50	36	16	16	32	1.90
2643942--2644004	32	2.0	32	93	0	108	36	12	14	36	1.84
2644047--2644072	13	2.0	13	100	0	52	30	15	15	38	1.88
2644027--2644093	33	2.0	33	85	0	89	26	14	14	43	1.85
2644606--2644636	11	2.8	11	95	0	53	83	16	0	0	0.64
2646547--2646615	27	2.5	28	88	2	95	24	33	20	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2646601--2646823	52	4.3	51	78	6	189	30	25	11	32	1.91
2646806--2646882	28	2.8	28	86	7	95	24	33	18	23	1.96
2646434--2646933	264	1.9	263	90	3	792	29	26	12	31	1.93
2654203--2654275	20	3.7	19	87	7	85	28	16	16	38	1.90
2656785--2656811	13	2.1	13	100	0	54	40	14	14	29	1.86
2656767--2656831	33	2.0	33	84	6	87	38	13	16	30	1.88
2658915--2658939	13	1.9	13	100	0	50	44	0	0	56	0.99
2665959--2666014	18	3.1	18	69	7	51	37	5	0	57	1.22
2666063--2666161	46	2.2	46	88	1	155	41	11	3	44	1.55
2666178--2666692	201	2.6	200	83	5	603	38	7	4	49	1.51
2667052--2667082	2	15.5	2	93	0	53	48	3	0	48	1.17
2672975--2673023	8	6.1	8	82	0	53	51	10	0	38	1.36
2672975--2673023	24	2.0	24	96	0	89	51	10	0	38	1.36
2672978--2673020	20	2.2	20	91	0	68	53	9	0	37	1.33
2675781--2675824	17	2.6	18	82	10	56	52	4	0	43	1.22
2677160--2677196	19	2.1	19	90	10	60	37	10	2	48	1.52
2679758--2679906	75	2.0	75	85	2	201	40	21	6	31	1.79
2680339--2680379	15	2.7	15	92	0	73	12	9	53	24	1.68
2685185--2685222	7	5.7	7	84	9	53	63	13	0	23	1.30
2685241--2685280	15	2.7	14	88	7	53	42	25	2	30	1.68
2685494--2685534	21	2.0	21	85	0	55	41	2	31	24	1.68
2693146--2693186	21	1.9	22	90	5	66	63	2	4	29	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2695712--2695736	12	2.1	12	100	0	50	56	0	8	36	1.29
2697461--2697486	2	13.0	2	100	0	52	0	50	0	50	1.00
2701545--2701576	2	16.0	2	100	0	64	0	50	0	50	1.00
2703392--2703550	87	1.8	87	91	0	264	38	18	11	32	1.86
2703513--2703560	21	2.3	21	78	7	53	39	18	8	33	1.81
2705951--2705998	14	3.4	14	77	8	53	10	0	39	50	1.37
2705983--2706269	7	41.0	7	70	13	137	16	2	41	40	1.62
2706114--2706291	7	25.3	7	70	7	74	11	3	46	39	1.56
2706389--2706473	7	12.0	7	88	2	80	4	3	60	31	1.35
2706389--2706472	21	4.0	20	87	6	96	4	3	60	30	1.34
2706387--2706524	14	9.8	14	75	10	77	5	3	58	31	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16

The End!