genome.fa.s202.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold202
Parameters: 2 7 7 80 10 50 1000
Length:  2706578

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  4  of  16  ( 1899 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
581270--581345	22	3.5	21	80	10	73	5	5	6	82	0.93
581294--581345	1	52.0	1	76	0	50	3	1	5	88	0.68
592658--592712	20	2.7	19	83	10	65	69	3	1	25	1.15
593918--593945	14	2.0	14	100	0	56	64	0	7	28	1.20
598595--598629	18	1.9	18	94	0	61	0	62	0	37	0.95
599248--599293	2	24.0	2	86	8	69	47	0	0	52	1.00
599502--599554	18	2.9	18	71	2	52	30	0	0	69	0.88
601320--601369	16	3.1	17	77	16	52	52	0	0	48	1.00
601585--601672	26	3.4	25	76	16	90	44	1	0	54	1.07
601581--601672	25	3.5	26	80	12	100	44	1	0	54	1.07
601670--601706	12	3.1	12	88	0	56	27	0	0	72	0.84
602720--602754	17	2.0	18	88	5	54	31	8	17	42	1.79
602755--602796	21	1.9	22	90	9	68	38	9	0	52	1.34
608064--608102	20	1.9	21	84	5	53	74	7	5	12	1.20
613012--613037	13	2.0	13	100	0	52	30	15	15	38	1.88
612992--613055	32	2.0	33	87	3	94	28	14	17	40	1.88
613796--613845	23	2.2	23	100	0	100	28	28	4	40	1.74
616340--616382	23	1.9	23	90	4	70	44	11	2	41	1.53
616849--616893	19	2.3	20	80	3	56	57	11	2	28	1.45
617080--617133	19	2.7	20	83	11	65	48	20	1	29	1.60
617995--618202	29	7.1	29	66	25	102	47	14	8	29	1.74
617964--618219	58	4.4	58	77	9	243	46	14	9	29	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
617989--618266	117	2.4	117	80	7	273	48	12	10	28	1.75
618079--618316	58	4.1	57	74	10	146	49	11	12	27	1.74
619598--619683	32	2.7	31	82	5	109	47	19	13	18	1.82
628067--628095	5	5.8	5	100	0	58	17	0	0	82	0.66
636645--636717	20	3.7	20	74	7	85	32	23	15	28	1.95
636646--636737	40	2.3	40	100	0	184	30	21	15	32	1.94
636666--636739	20	3.7	20	75	7	87	28	18	14	37	1.91
636725--636751	13	2.1	13	100	0	54	29	14	14	40	1.86
636706--636767	33	1.9	32	87	9	90	27	14	16	41	1.87
636836--636866	13	2.4	13	94	0	53	35	16	12	35	1.87
636820--636889	33	2.1	33	84	5	88	31	14	17	37	1.89
638184--638260	28	2.7	29	79	6	84	45	15	18	20	1.85
639631--639664	17	2.0	17	88	11	52	55	5	0	38	1.24
641487--641513	2	13.5	2	100	0	54	51	0	0	48	1.00
644061--644098	18	2.1	19	95	5	69	52	0	0	47	1.00
644063--644116	18	2.8	19	83	8	65	53	1	0	44	1.11
647735--647766	8	3.9	8	95	4	55	87	0	0	12	0.54
647778--647833	21	2.7	21	97	0	103	33	10	19	35	1.87
647869--647936	19	3.9	19	78	21	85	35	11	14	38	1.83
647890--647914	13	1.9	13	100	0	50	36	16	16	32	1.90
647871--647933	32	2.0	32	96	0	117	34	12	15	36	1.86
650411--650486	27	2.8	28	85	2	100	23	32	21	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
650508--650690	52	3.5	51	78	5	188	30	23	10	35	1.89
650469--650690	52	4.3	52	78	7	184	30	23	11	34	1.91
650679--650750	28	2.6	28	88	0	99	23	31	19	25	1.98
655614--655734	52	2.3	52	97	0	224	28	18	18	34	1.94
655614--655754	52	2.7	51	90	4	212	30	17	18	33	1.94
655743--655767	13	1.9	13	100	0	50	36	16	16	32	1.90
655811--655877	33	2.0	33	88	0	98	43	11	11	32	1.78
656676--657070	171	2.3	171	94	1	682	37	14	24	24	1.92
656747--656905	49	3.1	49	74	6	138	36	15	23	24	1.94
656985--657358	49	7.6	49	85	5	481	32	17	25	24	1.97
656918--657358	98	4.4	99	87	7	574	32	16	25	24	1.96
657363--657457	33	3.0	33	85	11	128	20	16	36	26	1.93
657412--657503	31	3.0	31	81	7	82	27	14	33	25	1.94
662586--663019	55	7.8	54	85	6	530	27	29	20	21	1.98
662586--663019	170	2.6	168	90	5	663	27	29	20	21	1.98
662552--663019	225	2.1	226	88	3	701	27	29	20	22	1.99
663111--663202	42	2.2	43	80	9	100	17	28	11	42	1.85
663851--663918	19	3.9	19	78	21	85	35	11	14	38	1.83
663872--663896	13	1.9	13	100	0	50	36	16	16	32	1.90
663853--663915	32	2.0	32	96	0	117	34	12	15	36	1.86
666361--666434	27	2.7	28	89	2	105	24	33	20	21	1.97
666419--666640	52	4.3	51	78	8	216	30	23	11	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
666617--666672	27	2.1	27	83	6	69	21	33	16	28	1.95
666653--666726	28	2.6	28	86	0	103	22	31	21	24	1.99
677497--677620	51	2.4	52	89	5	182	40	15	15	29	1.88
677676--677725	20	2.5	20	93	3	82	36	16	6	42	1.72
678287--678400	38	2.9	39	77	2	140	41	4	12	42	1.62
678293--678420	39	3.3	38	73	5	114	42	4	13	39	1.65
678417--678722	163	1.9	164	82	5	386	41	10	18	29	1.83
678887--679081	92	2.1	92	81	7	227	41	6	14	37	1.71
683404--683470	19	3.4	19	76	13	73	1	34	0	64	1.03
683529--683719	71	2.7	70	77	5	195	56	14	0	28	1.43
683733--683782	23	2.2	22	82	10	66	58	6	2	34	1.34
684195--684230	17	2.1	18	89	5	56	33	2	2	61	1.25
686000--686034	12	3.1	12	92	8	56	0	0	14	85	0.59
686000--686042	11	3.7	11	84	9	59	0	0	13	86	0.58
692082--692107	13	2.0	13	100	0	52	30	15	15	38	1.88
694651--694686	13	2.8	13	100	0	72	36	13	16	33	1.89
696768--696798	15	2.1	15	93	0	53	12	22	16	48	1.80
698598--698642	21	2.1	21	84	8	56	22	20	4	53	1.63
701902--701956	20	2.8	20	80	0	65	43	12	9	34	1.74
701918--702016	50	2.0	51	85	2	137	43	13	15	28	1.83
704418--704486	34	2.0	34	100	0	138	27	8	26	37	1.86
707667--707705	20	2.0	20	94	0	69	53	0	5	41	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
708924--708966	22	2.0	20	82	8	50	32	0	0	67	0.91
714069--714103	18	1.9	18	94	0	61	0	62	0	37	0.95
714722--714754	2	17.0	2	93	6	59	48	0	0	51	1.00
714959--715011	18	2.9	18	71	2	52	30	0	0	69	0.88
716183--716219	12	3.2	12	85	14	51	35	0	0	64	0.94
716738--716781	12	3.5	12	84	9	61	65	0	0	34	0.93
717075--717162	26	3.4	25	76	16	90	44	0	0	55	0.99
717071--717162	25	3.5	26	80	12	100	44	0	0	55	0.99
717158--717193	14	2.8	12	84	15	54	30	2	0	66	1.06
717095--717197	53	2.0	51	81	12	120	40	0	0	58	1.05
717367--717398	13	2.4	14	94	5	57	25	0	0	75	0.81
717369--717407	20	2.0	20	90	10	62	25	0	0	74	0.82
717369--717405	13	2.8	13	87	0	56	27	0	0	72	0.84
717389--717440	17	3.1	15	81	13	50	32	3	3	59	1.33
718231--718265	17	2.0	18	88	5	54	31	11	17	40	1.85
725089--725141	20	2.6	21	82	11	65	39	9	18	32	1.83
725179--725216	20	1.9	20	100	0	76	31	10	10	47	1.72
727630--727924	78	3.7	79	73	7	251	29	23	12	34	1.91
740738--740792	21	2.6	21	72	13	58	60	0	0	40	0.97
742230--742272	17	2.5	17	88	3	59	32	4	18	44	1.71
742498--742548	19	2.6	20	84	3	68	45	1	3	49	1.32
743918--743980	28	2.3	29	75	10	69	46	1	0	52	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
744164--744198	4	8.8	4	87	12	54	22	0	2	74	0.95
744254--744302	22	2.4	20	78	15	55	55	6	4	34	1.44
744279--744407	40	3.2	37	77	16	116	58	3	1	37	1.23
744837--744912	34	2.2	34	77	15	84	39	0	1	59	1.06
746816--746848	16	2.1	16	100	0	66	45	12	0	42	1.41
747287--747311	12	2.1	12	100	0	50	24	24	0	52	1.48
747712--748172	232	2.0	232	93	1	782	31	16	16	36	1.90
748373--748398	2	13.0	2	100	0	52	50	0	0	50	1.00
748255--748495	130	1.9	129	87	2	358	32	11	12	43	1.79
755273--755347	20	3.8	20	80	0	96	32	12	13	42	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16