genome.fa.s202.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold202
Parameters: 2 7 7 80 10 50 1000
Length:  2706578

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  2  of  16  ( 1899 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
192975--193012	20	2.0	20	94	5	69	36	15	10	36	1.82
193045--193072	13	2.2	13	100	0	56	39	17	14	28	1.89
193122--193176	19	2.8	20	84	13	78	34	16	16	32	1.91
193162--193188	13	2.1	13	100	0	54	40	14	14	29	1.86
193886--193960	38	2.0	37	86	2	105	52	20	4	24	1.63
194334--194362	14	2.1	14	100	0	58	34	6	20	37	1.80
194671--194797	45	2.8	45	90	0	191	27	9	22	40	1.85
195436--195503	28	2.4	28	71	9	66	19	19	4	57	1.57
199652--199770	20	5.9	20	69	11	82	42	11	14	31	1.82
199774--199805	14	2.3	14	94	0	55	40	15	12	31	1.85
199757--199861	32	3.2	32	65	24	74	32	14	14	39	1.86
214814--214865	18	2.8	19	82	5	63	82	11	1	3	0.88
214814--214850	10	3.9	10	86	13	51	83	10	0	5	0.79
214816--214865	9	5.6	9	81	9	57	84	10	2	4	0.84
215891--215973	37	2.2	37	93	0	148	26	16	14	42	1.87
216339--216834	29	17.3	29	86	4	636	31	29	17	21	1.96
216854--216941	43	2.0	43	84	0	113	25	21	18	35	1.95
216893--217039	49	3.0	49	84	2	170	25	26	15	32	1.95
222873--222911	20	1.9	20	84	5	51	10	30	43	15	1.80
223358--223382	13	1.9	13	100	0	50	32	16	16	36	1.90
250474--250499	13	2.0	13	100	0	52	38	7	23	30	1.83
253149--253173	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
257245--257291	23	2.0	23	87	0	67	46	12	14	25	1.80
257807--257850	20	2.2	20	87	0	61	36	4	13	45	1.64
259781--259819	20	2.0	20	84	0	51	17	5	12	64	1.46
259790--260121	165	2.0	164	81	8	379	31	10	7	50	1.64
261776--262013	118	2.0	118	86	3	327	30	11	13	44	1.79
261894--262279	142	2.7	139	84	7	510	33	10	11	44	1.75
263850--263927	38	2.1	38	97	0	147	38	6	5	50	1.50
264161--264338	43	4.2	43	83	4	218	38	13	28	19	1.90
264178--264462	43	6.8	41	75	10	154	38	14	27	19	1.91
265105--265277	89	1.9	90	91	3	287	33	16	23	26	1.96
269892--269967	20	3.8	20	85	0	116	42	13	13	31	1.82
270799--271273	28	16.4	28	84	4	518	23	17	30	28	1.97
270799--271273	85	5.5	85	85	6	564	23	17	30	28	1.97
270795--271273	113	4.1	115	86	4	612	24	17	29	28	1.97
272199--272258	11	5.5	10	75	18	50	1	1	13	83	0.80
272192--272259	31	2.2	30	89	7	102	2	1	14	80	0.89
272198--272249	23	2.2	24	86	3	70	1	1	13	82	0.84
272192--272259	14	4.4	16	72	20	56	2	1	14	80	0.89
272192--272249	8	7.4	8	82	3	73	3	1	12	82	0.86
286091--286165	20	3.8	20	77	7	80	40	12	9	38	1.75
286203--286237	18	1.9	18	94	0	61	34	11	11	42	1.77
287120--287619	28	17.5	28	83	3	523	24	16	29	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
287120--287619	85	5.8	86	83	4	582	24	16	29	29	1.97
287077--287619	113	4.7	113	82	5	570	25	17	28	28	1.97
288665--288711	8	5.9	8	77	7	51	2	2	12	82	0.84
288678--288711	17	1.9	18	94	5	61	0	2	14	82	0.79
288678--288711	9	3.8	9	88	11	52	0	2	14	82	0.79
304587--304756	20	7.9	20	71	19	110	42	12	14	29	1.83
304537--304767	92	2.5	92	89	1	349	44	12	15	28	1.82
310803--310854	20	2.7	19	91	5	79	30	13	19	36	1.90
321136--321203	19	3.9	18	73	23	74	35	13	14	36	1.85
321140--321200	32	1.9	32	96	0	113	36	14	14	34	1.87
324817--324860	23	1.9	23	95	0	79	61	11	6	20	1.52
328626--328657	16	2.0	17	88	11	50	9	18	18	53	1.71
330361--330414	19	2.8	19	97	0	99	35	11	16	37	1.84
336243--336280	20	2.0	20	94	5	69	36	10	15	36	1.82
336336--336360	13	1.9	13	100	0	50	32	16	16	36	1.90
336408--336463	19	2.8	20	79	12	71	33	17	14	33	1.90
336451--336475	13	1.9	13	100	0	50	40	16	16	28	1.89
336843--336958	59	2.0	59	98	0	223	44	5	13	36	1.66
338585--338622	19	2.0	20	89	5	60	2	13	28	55	1.51
338622--338681	25	2.4	25	100	0	120	3	10	21	65	1.38
338867--338938	24	3.0	25	74	15	87	13	19	9	56	1.64
338857--339038	52	3.5	52	80	5	174	13	20	9	56	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
339291--339334	16	2.8	16	80	10	54	22	2	0	75	0.92
339307--339356	24	2.1	23	88	3	73	28	4	0	68	1.08
339297--339357	24	2.4	25	75	22	65	29	3	0	67	1.07
339304--339363	21	2.7	22	71	21	54	30	3	0	66	1.07
339294--339371	27	2.9	25	71	27	61	29	3	0	66	1.09
344122--344211	25	3.6	25	80	0	90	46	20	23	10	1.80
344414--344443	14	2.1	14	100	0	60	23	6	16	53	1.66
349955--350593	201	3.1	201	87	4	867	22	17	30	28	1.97
349955--350593	28	21.9	28	83	4	657	22	17	30	28	1.97
351828--351887	9	6.9	9	71	7	52	5	1	8	85	0.81
351823--351877	19	2.9	19	84	10	60	7	1	5	85	0.80
351813--351886	18	3.9	18	76	13	69	5	1	10	82	0.89
351827--351876	25	2.0	26	92	4	84	6	2	6	86	0.79
365960--366075	51	2.3	51	83	3	144	30	19	12	37	1.90
365820--366009	79	2.4	78	81	5	238	29	21	12	37	1.89
366062--366135	28	2.7	27	83	10	96	25	29	17	27	1.97
366087--366293	79	2.6	80	77	11	212	27	24	15	32	1.95
366252--366318	28	2.4	28	90	5	100	23	25	17	32	1.97
369558--369595	15	2.7	15	84	8	53	28	2	0	68	1.03
370037--370078	22	1.9	22	85	0	57	50	16	14	19	1.79
370119--370271	25	6.1	25	80	0	153	41	17	28	12	1.86
370119--370271	50	3.1	50	79	3	173	41	17	28	12	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
370119--370271	75	2.0	75	86	2	209	41	17	28	12	1.86
370688--370741	25	2.2	25	86	0	72	51	7	24	16	1.69
370710--370842	33	3.9	33	73	6	88	44	11	28	15	1.81
371964--372000	19	1.9	19	100	0	74	27	16	13	43	1.85
376249--376274	13	2.0	13	100	0	52	30	15	15	38	1.88
382684--382728	21	2.1	21	84	8	56	22	20	4	53	1.63
384946--384971	13	2.0	13	100	0	52	30	15	15	38	1.88
390150--390203	20	2.8	19	82	2	63	31	12	18	37	1.89
390249--390278	13	2.3	13	100	0	60	33	16	13	36	1.88
391077--391101	13	1.9	13	100	0	50	32	16	16	36	1.90
397119--397144	8	3.2	8	100	0	52	15	0	23	61	1.33
397347--397371	13	1.9	13	100	0	50	32	16	16	36	1.90
397503--397544	22	2.0	20	86	13	59	38	21	0	40	1.53
399832--399856	13	1.9	13	100	0	50	32	16	16	36	1.90
399956--400013	13	4.9	13	68	23	56	37	18	13	29	1.90
399968--400035	20	3.8	20	70	25	78	38	20	13	27	1.90
399938--400034	33	3.0	33	93	1	160	38	20	14	26	1.91
403370--403583	110	1.9	112	82	5	265	32	12	14	40	1.83
404430--404766	92	3.7	91	81	2	381	29	26	13	29	1.94
405382--405632	85	3.0	85	80	3	267	19	21	13	44	1.85
405511--405636	42	3.0	41	78	5	128	19	20	14	46	1.84
405363--405752	85	4.7	83	75	8	229	20	22	13	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
406725--406762	20	1.9	20	88	0	58	15	5	10	68	1.36
407898--407949	10	4.9	10	77	11	50	73	0	23	3	1.00
408690--409332	139	4.6	138	82	5	731	34	9	10	44	1.73
408713--409332	280	2.2	279	84	5	813	35	9	10	44	1.72
412384--412425	21	2.0	21	81	13	50	21	16	9	52	1.72
424774--424821	21	2.4	21	89	6	73	77	6	8	8	1.14
426269--426464	50	3.9	50	81	4	171	28	25	12	33	1.92
426342--426516	50	3.4	50	81	5	174	28	26	14	31	1.95
426561--426669	52	2.1	52	89	0	164	21	20	17	41	1.91
429914--429969	19	2.8	19	86	5	67	33	14	16	35	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16