genome.fa.s202.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold202
Parameters: 2 7 7 80 10 50 1000
Length:  2706578

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  3  of  16  ( 1899 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
429998--430064	33	2.0	33	86	11	93	35	11	17	34	1.87
435454--435549	32	3.0	32	85	1	138	43	14	12	29	1.82
442649--442680	3	10.7	3	93	0	55	28	34	0	37	1.57
444370--444409	13	3.1	13	96	0	71	40	12	15	32	1.84
449843--449877	16	2.2	16	94	0	61	22	25	5	45	1.74
454277--454306	5	5.8	5	92	7	51	80	3	0	16	0.85
454277--454306	11	2.9	10	90	9	51	80	3	0	16	0.85
454326--454386	15	4.1	15	80	4	70	67	9	3	19	1.34
454348--454394	15	3.1	15	84	6	60	65	10	2	21	1.33
455527--455552	13	2.0	13	100	0	52	30	15	15	38	1.88
455612--455684	20	3.6	20	81	3	101	31	19	13	35	1.91
455591--455684	41	2.3	41	96	0	170	30	18	12	38	1.88
455591--455666	21	3.7	21	78	3	91	30	17	11	40	1.85
456246--456311	29	2.3	29	94	0	114	28	30	7	33	1.85
458142--458180	13	3.0	13	96	0	69	35	15	17	30	1.91
458166--458244	20	3.7	20	75	18	70	45	15	13	25	1.83
460259--460289	15	2.1	15	93	0	53	12	22	16	48	1.80
464353--464378	13	2.0	13	100	0	52	30	15	15	38	1.88
464438--464510	20	3.6	20	81	3	101	31	19	13	35	1.91
464417--464510	41	2.3	41	96	0	170	30	18	12	38	1.88
464417--464492	21	3.7	21	78	3	91	30	17	11	40	1.85
466601--466665	33	2.0	33	87	6	96	35	18	12	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
466694--466751	19	3.1	18	83	11	71	32	17	15	34	1.91
467805--467854	21	2.4	22	83	9	61	50	0	18	32	1.47
467962--467986	13	1.9	13	100	0	50	32	16	16	36	1.90
472544--472692	52	2.9	51	89	4	235	30	17	18	32	1.94
472681--472705	13	1.9	13	100	0	50	36	16	16	32	1.90
472746--472812	33	2.0	33	88	0	98	40	14	11	32	1.83
472768--472792	13	1.9	13	100	0	50	32	16	16	36	1.90
473013--473046	16	2.1	16	100	0	68	29	17	17	35	1.93
473670--473847	52	3.5	52	76	15	194	33	15	26	24	1.95
473743--473832	43	2.1	43	91	0	144	30	17	25	26	1.98
473835--473892	30	2.0	30	93	3	100	20	17	36	25	1.94
473931--474301	30	12.5	30	74	10	289	26	16	27	29	1.97
473837--474088	88	3.0	86	81	9	302	21	17	28	32	1.96
474125--474297	29	5.9	29	82	6	170	26	17	28	27	1.98
473836--474297	57	8.0	58	71	14	276	24	16	29	29	1.97
475739--475841	1	103.0	1	74	0	62	1	3	9	84	0.82
475739--475841	17	6.2	16	74	16	70	1	3	9	84	0.82
475739--475842	15	7.5	13	75	19	95	1	3	10	83	0.85
475752--475811	31	1.9	31	89	3	93	1	3	8	86	0.74
484705--484739	18	1.9	18	94	0	61	31	28	0	40	1.57
488656--489327	48	13.9	48	84	4	782	30	16	26	25	1.97
488724--489327	97	6.3	96	87	3	842	30	16	26	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
488724--489327	145	4.2	145	85	4	835	30	16	26	25	1.97
488948--489015	21	3.2	20	66	25	50	29	16	27	26	1.97
489427--489649	34	6.5	34	84	8	249	36	14	30	17	1.91
489427--489649	69	3.3	68	83	6	272	36	14	30	17	1.91
489457--489649	34	5.6	34	85	4	262	37	15	30	17	1.90
489694--489901	62	3.3	61	76	14	167	32	15	30	21	1.94
489782--489991	31	6.7	31	82	9	214	30	16	28	24	1.97
489782--489991	63	3.3	62	80	10	214	30	16	28	24	1.97
498212--498314	52	2.0	52	86	0	143	29	19	16	34	1.94
499932--499996	33	2.0	33	87	6	96	36	18	12	32	1.88
500025--500082	19	3.1	18	78	11	71	34	15	13	36	1.87
500066--500092	13	2.1	13	100	0	54	40	14	14	29	1.86
500983--501023	20	2.0	22	85	9	59	31	0	14	53	1.41
501523--501553	14	2.1	15	94	5	55	54	0	6	38	1.26
501578--501630	16	3.2	17	73	7	56	54	7	0	37	1.29
504869--504909	21	2.0	21	95	0	73	46	7	7	39	1.60
504870--504928	21	2.8	21	84	0	64	49	5	5	40	1.47
509076--509131	9	6.3	9	76	12	53	41	1	1	55	1.21
509470--509513	19	2.3	19	92	0	70	56	0	2	40	1.11
510989--511020	4	8.0	4	100	0	64	50	0	0	50	1.00
512702--512755	25	2.0	27	86	10	76	50	0	1	48	1.11
512702--512755	26	2.1	27	83	13	69	50	0	1	48	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
512716--512787	23	2.9	25	82	13	71	48	0	0	51	1.00
512767--512805	19	2.1	19	85	0	51	46	0	0	53	1.00
513269--513346	32	2.4	33	84	2	95	30	14	17	37	1.90
513369--513587	33	6.6	33	73	12	130	33	13	11	40	1.81
513328--513616	134	2.2	134	95	0	515	32	15	13	38	1.87
513435--513616	33	5.5	33	72	12	120	33	16	13	36	1.87
515309--515351	18	2.4	18	85	11	61	55	0	0	44	0.99
515262--515352	46	1.9	47	82	8	114	49	0	0	50	1.00
517009--517040	16	2.0	16	100	0	64	43	6	12	37	1.68
517426--517468	23	1.9	23	90	4	70	44	11	2	41	1.53
517547--517588	21	2.0	21	85	4	57	35	2	7	54	1.41
517941--517985	19	2.3	20	80	3	56	57	11	2	28	1.45
518172--518225	19	2.7	20	83	11	65	48	20	1	29	1.60
519088--519296	29	7.1	29	65	26	95	47	14	8	29	1.73
519057--519313	58	4.4	58	76	10	236	46	14	9	29	1.76
519139--519360	118	1.9	117	80	9	263	48	12	11	27	1.74
519282--519410	57	2.2	57	82	4	143	51	8	13	25	1.69
520704--520789	32	2.7	31	82	5	109	47	19	13	18	1.82
529160--529188	5	5.8	5	100	0	58	17	0	0	82	0.66
537738--537810	20	3.7	20	74	7	85	32	23	15	28	1.95
537739--537830	40	2.3	40	100	0	184	30	21	15	32	1.94
537759--537832	20	3.7	20	75	7	87	28	18	14	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
537818--537844	13	2.1	13	100	0	54	29	14	14	40	1.86
537799--537860	33	1.9	32	87	9	90	27	14	16	41	1.87
537929--537959	13	2.4	13	94	0	53	35	16	12	35	1.87
537913--537982	33	2.1	33	84	5	88	31	14	17	37	1.89
539277--539353	28	2.7	29	79	6	84	45	15	18	20	1.85
540724--540757	17	2.0	17	88	11	52	55	5	0	38	1.24
545095--545168	18	4.4	18	68	22	52	44	1	0	54	1.08
545135--545172	18	2.1	19	95	5	69	52	0	0	47	1.00
545137--545190	18	2.8	19	83	8	65	53	1	0	44	1.11
547191--547231	2	20.5	2	87	0	55	41	2	0	56	1.13
549105--549145	22	1.9	22	90	5	66	43	4	17	34	1.70
550649--550803	53	2.9	53	98	0	292	29	10	30	29	1.91
558390--558511	51	2.4	51	89	5	176	42	14	14	27	1.85
558567--558616	20	2.5	20	90	3	73	34	16	8	42	1.77
559177--559296	39	3.1	39	75	2	134	42	4	10	43	1.57
559188--559315	39	3.3	38	72	5	114	42	4	11	40	1.62
560377--560402	13	2.0	13	100	0	52	30	15	15	38	1.88
560927--561119	92	2.1	92	80	5	221	41	7	15	36	1.74
564711--564735	13	1.9	13	100	0	50	32	16	16	36	1.90
564723--564778	21	2.7	21	83	8	71	35	14	17	32	1.90
564835--564860	13	2.0	13	100	0	52	38	15	15	30	1.88
564817--564880	33	2.0	32	84	9	85	40	18	12	28	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
570997--571034	13	2.9	13	96	0	67	31	15	18	34	1.92
575481--575672	72	2.7	72	79	4	208	57	13	0	28	1.41
576151--576186	17	2.1	18	89	5	56	33	2	2	61	1.25
579902--579929	13	2.2	13	100	0	56	35	14	17	32	1.90
579881--579946	33	2.0	33	88	5	98	39	13	18	28	1.89
579965--580032	19	3.9	18	76	23	83	36	16	11	35	1.85
579988--580012	13	1.9	13	100	0	50	32	16	16	36	1.90
579969--580031	32	2.0	32	96	0	117	34	17	12	34	1.88
581294--581334	22	1.9	22	95	5	75	4	0	7	87	0.65
581300--581345	17	2.8	16	87	9	65	2	2	6	89	0.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16