genome.fa.s202.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold202
Parameters: 2 7 7 80 10 50 1000
Length:  2706578

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  6  of  16  ( 1899 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
951569--951601	13	2.5	13	95	0	57	36	15	15	33	1.88
951555--951619	33	2.0	33	87	6	96	36	12	16	33	1.87
952613--952653	7	5.9	7	100	0	82	41	0	0	58	0.98
952617--952662	21	2.2	21	84	7	58	45	4	0	50	1.21
958954--958999	22	2.1	22	88	8	67	17	10	17	54	1.70
960514--960566	14	3.8	14	79	0	70	52	0	0	47	1.00
960672--960701	15	1.9	16	93	6	53	70	0	0	30	0.88
960745--960807	25	2.4	26	77	15	67	31	4	3	60	1.33
962116--962161	21	2.2	21	84	0	56	28	21	34	15	1.94
970277--970314	19	2.0	19	90	10	60	55	7	0	36	1.29
970578--970617	17	2.3	18	86	4	55	60	5	2	32	1.32
971893--971955	20	3.1	20	81	9	74	50	11	3	34	1.54
973031--973066	18	1.9	19	94	5	65	50	5	0	44	1.25
973402--973463	19	2.9	21	79	18	58	43	3	0	53	1.17
976775--976799	13	1.9	13	100	0	50	36	16	16	32	1.90
976842--976937	19	5.7	18	69	28	77	36	16	11	35	1.85
976837--976939	32	3.2	32	92	1	170	35	16	10	36	1.83
976861--976917	13	3.9	13	72	24	51	35	15	12	36	1.85
977259--977301	20	2.1	21	86	4	61	39	0	2	58	1.11
982640--982717	22	3.2	25	76	23	85	44	0	0	55	0.99
982645--982724	25	3.3	24	76	16	85	43	0	0	56	0.99
983056--983102	24	1.9	24	86	4	67	40	12	2	44	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
984150--984185	19	1.9	18	88	5	54	50	0	11	38	1.38
984489--984529	2	20.5	2	100	0	82	48	0	0	51	1.00
984683--984734	2	26.0	2	96	0	95	1	0	48	50	1.12
985648--985689	14	2.6	16	85	14	52	61	4	2	30	1.29
985965--986013	25	2.0	24	84	11	64	67	16	0	16	1.24
986311--986349	9	4.3	9	81	12	53	0	66	0	33	0.92
988139--988568	218	2.0	218	96	0	797	34	15	17	32	1.91
989388--989418	2	15.5	2	100	0	62	48	0	51	0	1.00
991153--991186	3	11.3	3	100	0	68	67	0	0	32	0.91
1004737--1004797	32	1.9	32	90	6	97	54	0	0	45	1.00
1004736--1004802	27	2.3	31	80	12	79	52	0	0	47	1.00
1005698--1005907	116	1.8	116	85	2	296	39	8	9	43	1.67
1008251--1008319	36	1.9	36	84	0	93	40	2	0	56	1.14
1008336--1008390	19	3.2	17	73	14	51	36	0	0	63	0.95
1008348--1008391	20	2.3	19	80	4	52	40	0	0	59	0.98
1008693--1008726	2	17.0	2	100	0	68	0	50	0	50	1.00
1008903--1008937	2	17.5	2	100	0	70	48	0	0	51	1.00
1009103--1009138	2	18.5	2	94	5	65	50	0	0	50	1.00
1010000--1010036	18	2.1	17	90	5	56	48	2	0	48	1.15
1010065--1010123	8	7.2	8	82	7	57	44	1	1	52	1.21
1010073--1010123	2	26.5	2	80	7	61	47	1	0	50	1.12
1010065--1010123	16	3.6	16	81	6	66	44	1	1	52	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1010955--1010980	11	2.4	11	100	0	52	50	0	0	50	1.00
1011419--1011458	17	2.4	16	83	4	53	40	0	0	60	0.97
1011470--1011532	26	2.4	25	80	17	67	39	3	3	53	1.33
1011765--1011801	18	2.0	19	89	5	58	45	0	8	45	1.32
1011931--1011968	20	2.0	20	89	5	60	68	0	0	31	0.90
1012127--1012165	19	2.1	19	90	9	62	33	7	0	58	1.26
1012500--1012540	2	20.5	2	94	0	73	0	46	0	53	1.00
1014103--1014144	21	2.0	21	81	9	50	45	0	0	54	0.99
1016040--1016081	22	1.9	22	85	9	59	61	4	7	26	1.42
1030697--1030745	13	4.2	13	70	24	54	32	16	16	34	1.91
1030677--1030745	34	2.1	32	89	10	104	34	15	15	33	1.90
1031644--1031670	13	2.1	13	100	0	54	37	14	7	40	1.74
1031636--1031719	33	2.6	34	83	7	111	30	16	13	39	1.87
1031689--1031740	19	2.7	20	84	3	70	30	19	15	34	1.93
1031691--1031739	20	2.5	19	86	3	62	32	20	12	34	1.90
1036620--1036678	30	2.0	30	96	0	109	30	25	22	22	1.99
1037080--1037109	9	3.3	9	95	0	51	53	0	20	26	1.46
1037084--1037113	9	3.3	9	95	0	51	46	0	23	30	1.52
1039465--1039490	13	2.0	13	100	0	52	30	15	15	38	1.88
1039529--1039605	21	3.8	20	79	5	91	29	15	11	42	1.82
1039550--1039622	20	3.6	20	81	3	101	31	19	13	35	1.91
1039529--1039622	41	2.3	41	96	0	170	30	17	12	39	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1040266--1040344	40	2.0	40	100	0	158	31	20	5	43	1.73
1042113--1042150	13	2.9	13	96	0	67	31	15	18	34	1.92
1044230--1044260	15	2.1	15	93	0	53	12	22	16	48	1.80
1046064--1046108	21	2.1	21	84	8	56	22	20	4	53	1.63
1048324--1048349	13	2.0	13	100	0	52	30	15	15	38	1.88
1048388--1048463	21	3.7	21	80	3	100	28	17	11	42	1.84
1048409--1048481	20	3.6	20	81	3	101	31	19	13	35	1.91
1048388--1048481	41	2.3	41	98	0	179	29	18	12	39	1.88
1050308--1050345	3	12.7	3	88	0	58	34	0	34	31	1.58
1055314--1055345	12	2.7	12	95	0	55	31	9	28	31	1.88
1055577--1055656	43	1.9	41	84	5	106	50	5	21	23	1.68
1057997--1058030	13	2.6	13	85	0	50	17	14	2	64	1.40
1059306--1059555	31	7.9	31	71	15	143	42	13	22	21	1.87
1059010--1059472	63	7.4	62	72	7	211	42	13	23	21	1.88
1059482--1059551	34	2.1	34	81	5	79	51	11	15	21	1.75
1060520--1060567	25	2.0	24	87	4	69	2	6	12	79	1.01
1067768--1067880	50	2.3	50	84	9	142	46	13	9	30	1.75
1075090--1075162	3	24.7	3	94	2	130	67	0	1	31	1.00
1075320--1075370	2	26.5	2	82	7	52	45	1	5	47	1.38
1075299--1075373	31	2.5	28	72	17	71	41	2	9	46	1.50
1077287--1077326	20	2.0	21	85	5	55	40	10	0	50	1.36
1081577--1081638	32	1.9	32	100	0	124	17	22	19	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1082763--1083058	61	4.8	61	81	5	301	31	18	18	31	1.95
1082808--1083049	122	2.0	125	85	4	339	30	19	17	33	1.95
1084092--1084147	24	2.3	24	81	0	67	17	19	8	53	1.70
1085192--1085244	19	2.7	19	91	2	79	30	20	13	35	1.91
1085295--1085320	13	2.0	13	100	0	52	30	15	15	38	1.88
1085816--1085939	39	3.2	39	94	0	221	30	12	20	37	1.89
1091585--1091624	13	3.1	13	77	0	53	32	10	15	42	1.79
1094087--1094112	13	2.0	13	100	0	52	30	15	15	38	1.88
1095307--1095536	78	2.9	77	77	12	202	36	11	23	29	1.89
1095271--1095461	79	2.4	78	77	6	199	34	13	22	29	1.92
1095525--1095698	79	2.2	79	94	2	305	29	10	29	29	1.91
1098041--1098097	20	2.7	21	89	8	89	43	10	14	31	1.79
1098146--1098172	13	2.1	13	100	0	54	37	14	7	40	1.74
1112571--1112600	5	6.0	5	92	0	51	83	0	16	0	0.65
1112572--1112601	15	2.0	15	100	0	60	86	0	13	0	0.57
1113639--1114066	32	12.9	31	69	15	171	23	27	12	37	1.90
1113639--1114066	66	6.4	66	77	8	337	23	27	12	37	1.90
1114036--1114149	27	4.2	27	85	6	151	23	30	14	31	1.94
1114141--1114236	32	3.1	31	79	10	97	31	32	13	22	1.93
1114175--1114261	32	2.7	32	82	3	104	31	32	17	19	1.95
1114301--1114376	28	2.7	28	89	0	116	30	34	15	19	1.93
1114330--1114423	47	2.0	47	87	0	134	32	30	13	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1114377--1114479	28	3.5	30	78	13	90	30	33	14	22	1.94
1114390--1114609	32	7.0	31	80	11	157	29	32	16	21	1.95
1114435--1114609	62	2.7	62	79	9	192	29	33	16	21	1.95
1114431--1114629	32	6.2	32	78	9	185	26	33	17	23	1.96
1114629--1114891	113	2.3	113	75	2	267	25	21	15	38	1.92
1114787--1114919	61	2.2	61	80	2	151	25	24	12	38	1.90
1119334--1119359	13	2.0	13	100	0	52	30	15	15	38	1.88
1119314--1119377	32	2.0	33	90	3	103	28	14	15	42	1.86
1120005--1120084	39	2.0	40	85	2	108	32	22	7	37	1.82
1121452--1121494	20	2.1	20	82	4	50	9	27	44	18	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16