genome.fa.s267.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold267
Parameters: 2 7 7 80 10 50 1000
Length:  2306539

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  10  of  15  ( 1685 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1437146--1437254	39	2.8	39	90	0	155	28	24	22	24	1.99
1437685--1437874	39	4.6	39	77	13	157	26	25	21	26	1.99
1433182--1438173	612	8.1	612	77	11	2238	25	25	18	30	1.98
1444201--1444258	10	6.0	9	81	18	64	0	13	3	82	0.79
1444201--1444251	19	2.6	19	79	14	68	0	13	1	84	0.71
1444207--1444258	19	2.8	17	86	13	68	0	13	3	82	0.80
1444201--1444259	28	2.1	28	90	3	93	0	15	3	81	0.82
1444208--1444250	8	4.9	8	81	18	50	0	13	2	83	0.74
1444211--1444273	28	2.2	28	83	8	74	1	20	3	74	1.04
1451115--1451318	100	2.1	99	80	7	234	38	10	21	28	1.87
1451146--1451324	100	1.8	100	86	2	263	40	10	21	27	1.85
1453673--1453808	51	2.6	52	79	5	143	39	13	13	33	1.84
1454304--1454390	19	4.4	20	85	2	97	32	14	13	39	1.86
1454443--1454467	13	1.9	13	100	0	50	32	20	16	32	1.94
1454423--1454487	33	2.0	33	84	6	87	36	13	18	30	1.90
1461748--1461782	15	2.3	15	95	0	61	28	28	0	42	1.56
1463373--1463436	33	1.9	33	84	6	85	32	20	12	34	1.90
1463356--1463519	83	2.0	83	95	0	292	28	18	17	35	1.94
1463456--1463522	33	2.0	33	85	5	91	34	19	11	34	1.88
1463555--1463638	19	4.7	19	78	18	99	39	14	16	29	1.88
1463591--1463649	13	5.1	13	76	23	69	40	15	15	28	1.87
1463572--1463668	32	3.0	32	93	1	158	40	15	16	27	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1464571--1464608	2	19.0	2	100	0	76	50	0	0	50	1.00
1465228--1465279	11	4.6	11	77	13	52	40	15	3	40	1.65
1465288--1465364	41	1.9	41	84	10	106	38	1	3	55	1.26
1465973--1466027	21	2.6	22	82	8	69	38	10	18	32	1.85
1466068--1466184	51	2.3	51	85	2	155	29	15	11	43	1.81
1468397--1468751	79	4.5	77	76	12	233	28	25	12	32	1.93
1468450--1468751	80	3.8	78	75	10	252	27	26	12	32	1.93
1468921--1468966	21	2.1	21	84	11	58	43	6	10	39	1.66
1475329--1475364	13	2.8	13	95	0	63	33	16	16	33	1.92
1476285--1476311	13	2.1	13	100	0	54	40	14	14	29	1.86
1477436--1477675	37	6.5	37	75	7	175	33	16	19	30	1.94
1477507--1477675	75	2.3	75	80	6	202	33	16	20	29	1.94
1477831--1477861	15	2.1	15	93	0	53	48	12	9	29	1.73
1479901--1479926	13	2.0	13	100	0	52	30	15	15	38	1.88
1480625--1480668	21	2.1	21	83	8	54	25	31	4	38	1.76
1482474--1482512	13	3.0	13	100	0	78	38	15	15	30	1.88
1484583--1484613	15	2.1	15	93	0	53	12	22	16	48	1.80
1486417--1486461	21	2.1	21	84	8	56	22	20	4	53	1.63
1488688--1488713	13	2.0	13	100	0	52	30	15	15	38	1.88
1492700--1492752	14	3.7	14	80	14	56	39	0	3	56	1.17
1497802--1497834	11	3.1	11	86	4	50	45	0	3	51	1.16
1498183--1498211	2	14.5	2	100	0	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1500366--1500420	21	2.7	21	85	2	76	36	12	16	34	1.87
1501779--1501841	32	1.9	32	87	3	90	33	15	11	39	1.83
1501806--1501863	19	3.1	18	85	11	80	36	15	15	32	1.89
1501807--1501862	20	2.8	20	89	7	80	33	16	16	33	1.91
1505812--1505839	13	2.2	13	100	0	56	39	17	14	28	1.89
1505794--1505859	33	2.0	33	85	5	89	40	13	15	30	1.85
1505891--1505943	21	2.6	21	88	5	74	33	16	13	35	1.88
1510470--1510527	13	4.0	13	76	23	62	29	15	15	39	1.88
1510483--1510545	19	3.6	19	76	24	84	28	15	15	39	1.89
1510466--1510545	32	2.5	32	100	0	160	27	15	16	41	1.88
1510534--1510675	65	2.2	65	100	0	284	30	21	15	32	1.94
1513149--1513184	13	2.8	13	95	0	63	33	16	16	33	1.92
1515223--1515253	15	2.1	15	93	0	53	12	22	16	48	1.80
1524112--1524137	13	2.0	13	100	0	52	30	15	15	38	1.88
1524121--1524178	19	3.1	18	83	11	80	36	15	15	32	1.89
1524122--1524177	20	2.8	20	86	7	80	33	16	16	33	1.91
1524222--1524252	13	2.4	13	94	0	53	35	16	9	38	1.81
1524209--1524273	33	2.0	33	90	6	105	33	13	16	35	1.89
1525382--1525441	16	3.8	15	74	10	57	43	25	15	16	1.86
1537361--1537398	13	2.9	13	92	0	58	31	13	15	39	1.86
1537833--1537885	20	2.5	21	81	12	63	22	47	24	5	1.73
1539948--1539972	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1539928--1539995	33	2.1	33	88	2	102	35	17	14	32	1.91
1541525--1541567	13	3.3	12	81	9	50	16	18	2	62	1.43
1543633--1543675	21	2.0	21	95	0	77	27	25	0	46	1.53
1546467--1546502	16	2.3	15	90	4	54	88	0	11	0	0.50
1546474--1546502	10	3.0	10	95	5	51	93	0	6	0	0.36
1546475--1546503	14	2.0	15	93	6	51	89	0	10	0	0.48
1546467--1546509	15	2.7	17	79	17	56	83	0	16	0	0.64
1547232--1547282	16	3.2	16	86	2	68	54	0	0	45	0.99
1548032--1548093	21	2.9	21	78	2	61	48	1	0	50	1.10
1556970--1557007	20	1.9	20	100	0	76	31	10	21	36	1.87
1556991--1557016	13	2.0	13	100	0	52	30	15	23	30	1.95
1556971--1557035	33	2.0	33	90	6	105	35	12	20	32	1.89
1558663--1558756	46	2.0	46	97	0	179	40	5	22	31	1.76
1560554--1560593	15	2.6	16	85	14	50	55	10	17	17	1.69
1562504--1562545	20	2.2	20	87	8	61	28	2	21	47	1.63
1562494--1562545	19	2.7	19	79	8	61	26	1	19	51	1.57
1562860--1563040	88	2.1	88	97	0	344	38	18	4	38	1.71
1562863--1563007	44	3.3	46	69	19	144	40	17	4	37	1.71
1565097--1565135	19	2.0	19	85	5	51	48	10	10	30	1.70
1565350--1565400	20	2.5	20	90	0	84	29	13	11	45	1.79
1565386--1565436	19	2.6	20	81	6	68	27	15	17	39	1.90
1566767--1566806	21	1.9	21	85	10	55	40	0	15	45	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1568840--1568945	55	1.9	55	90	0	167	34	15	9	40	1.79
1569480--1569531	23	2.3	23	87	9	72	69	0	30	0	0.89
1569480--1569519	18	2.2	18	86	8	55	70	0	30	0	0.88
1569704--1569746	21	2.0	21	90	0	68	44	0	0	55	0.99
1570442--1570495	23	2.4	22	78	6	63	55	3	0	40	1.17
1570650--1570691	17	2.5	17	76	11	50	47	0	0	52	1.00
1570687--1570722	17	2.1	16	85	14	54	77	0	2	19	0.88
1571012--1571071	19	2.9	21	73	14	52	5	43	1	50	1.34
1577517--1577748	96	2.4	98	82	6	269	36	13	22	27	1.92
1577501--1577760	96	2.7	96	78	9	262	37	12	22	28	1.90
1578402--1578466	33	2.0	33	85	11	89	33	13	18	33	1.90
1580058--1580100	3	14.3	3	95	0	77	34	0	34	30	1.58
1586475--1586626	67	2.3	66	87	7	213	37	5	20	36	1.77
1590304--1590453	52	2.9	52	90	2	239	30	18	16	34	1.93
1590475--1590527	20	2.7	20	91	2	90	39	16	11	32	1.85
1593751--1593924	52	3.3	52	82	4	199	48	12	10	28	1.73
1594628--1594881	52	4.9	52	80	0	222	36	13	22	26	1.92
1594621--1594882	104	2.5	104	81	3	287	36	14	23	26	1.93
1594926--1595231	138	2.2	138	83	2	373	31	12	25	31	1.93
1595137--1595289	60	2.6	57	80	6	182	34	13	22	28	1.93
1595344--1595500	64	2.4	65	87	2	217	22	15	31	29	1.95
1595330--1595510	32	5.6	32	74	7	159	22	18	29	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1597151--1597190	13	3.1	13	96	0	71	30	20	15	35	1.93
1597554--1597581	14	2.0	14	100	0	56	28	0	28	42	1.56
1600875--1600899	13	1.9	13	100	0	50	36	16	16	32	1.90
1601748--1601850	46	2.2	46	94	0	179	31	2	33	32	1.73
1611703--1611727	13	1.9	13	100	0	50	32	16	16	36	1.90
1611683--1611750	33	2.1	33	89	8	104	36	16	14	32	1.89
1613333--1613374	21	2.0	21	85	0	57	42	4	28	23	1.74
1616967--1616991	13	1.9	13	100	0	50	32	16	16	36	1.90
1616947--1617014	33	2.1	33	89	8	104	36	16	14	32	1.89
1616903--1617214	149	2.1	149	100	0	624	33	17	17	32	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15