genome.fa.s267.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold267
Parameters: 2 7 7 80 10 50 1000
Length:  2306539

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  6  of  15  ( 1685 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
901480--901925	31	14.2	31	82	8	453	24	30	13	31	1.94
901477--901884	63	6.5	63	85	6	487	25	30	13	30	1.94
901865--902056	34	5.6	34	84	4	183	19	35	11	32	1.89
901865--902055	69	2.8	69	79	7	176	19	35	12	32	1.89
902114--902525	43	8.9	43	70	20	237	26	25	17	30	1.97
902184--902252	21	3.2	21	65	25	54	26	26	18	28	1.98
902114--902542	91	4.6	92	76	13	392	26	25	17	31	1.97
902296--902491	52	3.9	51	79	10	215	26	25	16	32	1.96
903387--903440	21	2.7	21	85	5	76	37	12	16	33	1.87
908062--908177	57	2.0	57	100	0	232	33	17	30	18	1.94
909410--909434	13	1.9	13	100	0	50	32	16	16	36	1.90
911527--911568	18	2.3	18	84	12	50	69	2	4	23	1.20
915436--915466	8	3.8	8	95	4	53	12	0	25	61	1.32
917518--917561	21	2.0	21	86	4	61	34	4	29	31	1.78
918222--918273	20	2.7	20	90	3	79	38	21	13	26	1.90
920445--920524	15	5.5	14	80	12	90	83	13	0	2	0.74
920445--920524	29	2.7	30	86	3	101	83	13	0	2	0.74
920444--920510	1	67.0	1	72	0	53	86	10	0	2	0.67
921801--922134	31	10.6	31	84	6	336	23	31	14	29	1.94
922034--922169	34	4.1	34	80	11	147	20	36	11	31	1.89
922034--922169	69	2.0	65	84	5	173	20	36	11	31	1.89
922073--922262	35	5.5	34	84	5	188	18	36	12	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
922073--922238	69	2.4	69	82	7	185	18	37	10	33	1.85
922372--922780	43	8.9	43	76	13	297	26	24	18	30	1.98
922383--922494	22	5.2	22	62	23	58	27	23	18	30	1.98
922436--922504	21	3.2	21	67	25	63	26	23	18	31	1.97
922403--922637	91	2.6	91	81	7	298	25	25	20	28	1.99
922548--922736	52	3.7	51	83	3	229	25	24	17	32	1.97
923745--923772	13	2.2	13	100	0	56	28	14	17	39	1.89
923725--923791	33	2.0	33	88	5	100	29	16	13	40	1.87
934494--934541	8	5.9	8	78	4	51	83	16	0	0	0.65
934503--934543	10	3.9	10	81	12	55	85	14	0	0	0.60
934494--934543	13	3.8	13	85	15	59	84	16	0	0	0.63
935337--935388	20	2.7	20	90	3	79	26	13	21	38	1.90
936925--937938	95	10.7	95	83	8	1126	21	28	14	35	1.93
936925--937940	127	8.0	127	88	4	1305	21	28	14	35	1.93
936991--937932	32	30.0	27	73	16	221	21	28	14	34	1.93
937902--938001	33	3.2	31	75	9	87	21	27	13	39	1.90
938030--938141	32	3.4	33	78	7	120	20	33	12	33	1.90
938146--938245	33	3.0	33	92	0	164	30	32	17	21	1.95
938258--938961	49	14.6	49	75	12	559	24	26	17	31	1.97
938446--938904	235	2.0	229	88	2	675	25	26	17	30	1.97
938585--938991	92	4.3	94	83	8	427	24	26	17	31	1.97
939747--939799	20	2.7	20	85	2	72	39	13	16	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
943081--943139	31	1.9	31	86	10	86	30	18	15	35	1.92
943597--943693	36	2.9	34	78	14	96	34	21	9	35	1.86
943168--944674	564	2.7	564	98	0	2861	33	15	15	34	1.90
944161--944257	36	2.9	34	78	14	96	34	21	9	35	1.86
944807--944853	20	2.4	20	85	3	60	40	19	14	25	1.90
944804--944853	19	2.6	19	83	3	64	38	18	16	28	1.91
946220--946256	14	2.6	14	87	12	58	62	0	0	37	0.96
947670--947708	5	7.8	5	97	0	69	76	0	2	20	0.90
951247--951283	18	2.1	18	94	0	65	35	10	8	45	1.69
958100--958127	3	9.3	3	100	0	56	64	0	35	0	0.94
958695--958763	33	2.1	33	81	10	79	30	0	0	69	0.89
958692--958751	16	3.7	16	75	16	61	31	0	0	68	0.90
958790--958838	19	2.5	20	83	6	66	48	2	0	48	1.12
958789--958843	15	3.2	17	78	17	60	49	1	0	49	1.11
959963--960000	19	2.0	19	100	0	76	36	15	15	31	1.90
960223--960292	28	2.6	28	81	4	72	37	11	5	45	1.64
961501--961525	10	2.5	10	100	0	50	92	0	8	0	0.40
964322--964455	29	4.6	28	75	12	110	39	15	23	21	1.91
966383--966431	22	2.2	22	92	0	80	34	14	12	38	1.83
966390--966459	22	3.3	22	92	4	108	31	17	11	40	1.85
974024--974174	52	2.9	51	86	3	212	31	15	19	32	1.94
974163--974187	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
974228--974294	33	2.0	33	88	0	98	40	14	11	32	1.83
974250--974274	13	1.9	13	100	0	50	32	16	16	36	1.90
977715--977765	2	25.5	2	95	0	93	52	0	47	0	1.00
978867--978967	28	3.5	29	77	14	109	26	27	16	28	1.97
978861--979024	29	5.5	30	80	11	149	25	26	14	32	1.95
978861--979024	30	5.5	30	79	13	151	25	26	14	32	1.95
978923--979100	30	5.9	30	79	9	157	24	28	12	34	1.92
979102--979392	33	8.9	33	77	9	240	29	30	16	23	1.96
979098--979365	98	2.8	97	79	10	273	30	30	16	22	1.96
979119--979383	65	4.1	65	73	10	204	29	29	17	22	1.97
979488--979728	52	4.7	52	80	4	263	26	24	14	35	1.93
979488--979728	104	2.3	103	84	4	299	26	24	14	35	1.93
980629--980693	19	3.8	18	71	24	68	33	12	15	38	1.85
980631--980698	32	2.1	32	94	0	118	35	11	16	36	1.85
980746--980770	13	1.9	13	100	0	50	32	16	16	36	1.90
980779--980904	52	2.4	52	95	0	234	34	17	19	27	1.95
987806--987857	18	2.9	17	81	18	70	84	13	0	1	0.70
987812--987861	11	4.3	12	83	16	70	88	12	0	0	0.53
987806--987859	19	2.9	19	86	13	78	85	12	0	1	0.69
989168--989535	31	11.7	31	83	8	433	23	26	16	33	1.96
989162--989535	63	6.0	62	83	9	447	22	26	16	34	1.95
989516--989798	34	8.3	34	90	2	390	19	32	13	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
989916--990879	49	20.5	49	82	8	956	26	24	17	31	1.97
989889--990879	92	10.5	94	85	5	1038	26	24	17	31	1.97
990141--990208	22	3.1	22	62	19	52	26	25	17	30	1.97
990601--990668	22	3.1	22	60	19	52	23	26	17	32	1.97
991735--991831	19	5.8	18	69	27	79	30	14	16	38	1.89
991737--991836	32	3.1	32	97	0	182	32	14	17	37	1.89
991756--991812	13	3.9	13	72	24	51	33	15	15	35	1.90
991904--992028	51	2.4	52	91	1	207	35	16	18	29	1.93
993116--993154	13	3.0	13	88	0	60	30	15	17	35	1.91
994917--995003	43	2.0	43	95	0	156	42	2	25	29	1.67
995712--995736	13	1.9	13	100	0	50	32	16	16	36	1.90
995692--995759	33	2.1	33	91	2	111	35	16	14	33	1.89
996523--996547	13	1.9	13	100	0	50	32	16	16	36	1.90
996528--996587	20	3.0	20	87	0	84	36	11	18	33	1.87
998148--998189	3	14.0	3	89	0	66	38	0	30	30	1.58
1007586--1007657	22	3.4	22	67	7	58	31	4	33	30	1.77
1010474--1010586	44	2.6	44	94	0	190	38	0	26	33	1.63
1010474--1010585	20	5.0	22	77	16	106	39	0	26	33	1.63
1012925--1012977	20	2.6	20	96	3	97	20	15	18	45	1.85
1015326--1015354	13	2.1	14	93	6	51	72	13	0	13	1.13
1023224--1023473	27	9.1	28	78	7	235	24	28	13	33	1.93
1023246--1023469	54	4.1	55	84	2	274	23	29	12	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1023247--1023454	109	1.9	109	85	3	285	24	30	12	32	1.92
1023499--1024571	28	36.8	29	80	10	826	30	29	17	22	1.97
1023506--1023642	60	2.2	62	89	2	215	35	24	18	21	1.96
1023642--1023677	19	1.9	18	94	5	63	38	38	2	19	1.66
1023614--1023769	50	2.9	51	83	10	179	32	32	16	18	1.94
1023523--1024495	141	6.7	144	77	13	492	30	29	16	22	1.96
1024636--1024758	49	2.6	46	80	7	122	21	25	20	32	1.98
1027778--1029019	640	1.9	639	81	3	1480	29	20	19	30	1.97
1029052--1029408	52	6.5	53	71	12	186	38	16	21	23	1.92
1029202--1029378	61	2.9	61	87	0	239	40	13	22	23	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15