genome.fa.s267.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold267
Parameters: 2 7 7 80 10 50 1000
Length:  2306539

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  4  of  15  ( 1685 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
541631--541679	14	3.4	15	78	21	52	75	0	22	2	0.90
541654--541683	9	3.2	9	95	4	51	86	0	13	0	0.57
541631--541681	20	2.9	17	86	13	61	76	0	21	1	0.88
544492--544531	21	2.0	20	85	5	53	65	2	5	27	1.27
546845--546900	22	2.5	23	97	2	105	62	8	10	17	1.52
547810--547867	20	2.9	19	82	7	71	39	13	12	34	1.82
548355--549386	86	12.0	86	86	4	1372	22	17	31	28	1.97
548343--549384	29	36.2	29	88	4	1386	22	17	31	28	1.96
550617--550670	1	54.0	1	81	0	63	1	1	5	90	0.57
550607--550670	16	4.1	15	82	11	76	3	3	6	87	0.73
550607--550669	10	6.6	10	78	7	60	3	3	6	87	0.74
563723--563778	22	2.5	23	91	2	96	64	7	10	17	1.47
564691--564765	20	3.8	20	80	3	80	40	12	13	34	1.81
564688--564765	40	2.0	39	87	2	111	39	12	12	34	1.82
568134--568258	52	2.4	52	91	0	196	30	17	16	36	1.92
568141--568278	52	2.7	52	85	4	172	33	17	15	33	1.92
568332--568398	33	2.0	33	88	0	98	40	14	11	32	1.83
568354--568378	13	1.9	13	100	0	50	32	16	16	36	1.90
571135--571174	17	2.5	17	88	8	57	57	0	0	42	0.98
571135--571175	15	2.6	16	81	18	50	56	0	0	43	0.99
571235--571268	2	17.0	2	100	0	68	50	0	0	50	1.00
574036--574091	27	2.1	27	93	0	94	28	16	25	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
575738--575804	32	2.1	32	97	0	125	35	10	16	37	1.83
575939--576083	72	2.0	72	97	0	272	35	13	10	41	1.78
577604--577631	2	14.0	2	100	0	56	50	0	50	0	1.00
578866--578891	2	13.0	2	100	0	52	50	0	0	50	1.00
585558--585595	11	3.4	11	89	7	58	36	2	39	21	1.67
585954--586025	20	3.6	20	98	0	135	38	19	13	27	1.90
585990--586104	51	2.3	51	81	3	142	39	13	19	27	1.90
586878--586903	13	2.0	13	100	0	52	30	15	15	38	1.88
586858--586921	32	2.0	33	87	3	94	29	14	17	39	1.88
588377--588695	68	4.5	70	75	15	293	35	13	25	25	1.93
588299--588695	140	2.8	138	82	8	453	37	14	23	24	1.93
597171--597211	18	2.3	18	86	0	55	75	14	4	4	1.14
597197--597233	19	1.9	19	88	0	56	86	13	0	0	0.57
597479--597523	20	2.2	20	84	4	54	82	6	11	0	0.84
598515--598667	31	4.9	31	83	7	177	24	30	15	30	1.96
598510--598987	62	7.6	61	75	15	307	21	31	14	33	1.93
598544--599049	34	15.9	34	77	12	309	21	32	13	32	1.92
598576--598788	28	7.0	28	79	14	149	23	31	13	30	1.93
598989--599069	27	3.0	27	94	0	135	23	33	14	28	1.94
599142--599888	49	15.8	48	78	10	709	24	25	18	32	1.97
599142--599884	92	7.9	92	90	2	1002	24	25	18	32	1.97
599600--600004	150	2.6	151	85	4	517	23	25	17	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
599142--600004	92	9.0	100	87	5	860	24	25	17	32	1.97
600735--600797	19	3.7	18	76	24	73	33	14	19	33	1.91
600754--600778	13	1.9	13	100	0	50	36	16	16	32	1.90
600735--600805	32	2.2	32	97	0	133	32	14	19	33	1.92
604897--604981	32	2.7	32	92	0	134	32	11	17	37	1.86
604930--604954	13	1.9	13	100	0	50	36	16	16	32	1.90
605024--605050	13	2.1	13	100	0	54	29	14	14	40	1.86
608846--609137	139	2.1	139	85	3	392	43	11	11	33	1.77
611983--612070	44	2.0	44	88	4	133	39	18	20	21	1.92
612162--612360	47	4.2	47	80	1	193	37	13	22	26	1.91
612132--612542	94	4.4	94	70	6	237	39	14	22	23	1.91
612201--612513	47	6.8	46	73	6	134	40	15	20	23	1.91
612210--612614	182	2.2	184	81	3	478	39	17	21	21	1.92
612301--612608	89	3.4	89	72	7	269	40	17	20	21	1.91
613761--613785	12	2.1	12	100	0	50	8	12	8	72	1.29
614115--614141	11	2.5	11	100	0	54	0	18	0	81	0.69
622744--622774	13	2.4	13	94	0	53	35	12	16	35	1.87
622724--622790	33	2.0	33	88	11	102	32	17	13	35	1.89
622861--622886	13	2.0	13	100	0	52	38	15	15	30	1.88
624407--624432	13	2.0	13	100	0	52	38	15	15	30	1.88
624389--624452	33	2.0	33	87	9	96	39	17	15	28	1.90
624486--624529	20	2.1	22	91	8	74	40	20	9	29	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
626663--626714	21	2.4	21	78	9	61	63	3	9	23	1.41
630597--630635	13	3.0	13	96	0	69	30	17	15	35	1.91
632256--632298	22	2.0	20	86	8	59	13	9	13	62	1.53
633201--633226	13	2.0	13	100	0	52	38	15	15	30	1.88
633183--633246	33	2.0	33	87	9	96	40	17	14	28	1.88
633280--633323	20	2.1	22	87	8	65	43	20	6	29	1.78
635984--636047	8	7.9	8	75	16	51	85	7	1	4	0.78
635985--636046	7	8.9	7	79	10	56	85	8	1	4	0.79
635999--636046	17	2.7	18	90	3	71	85	8	2	4	0.80
637416--637523	34	3.2	34	69	10	94	25	31	9	34	1.87
637271--637577	165	1.9	163	81	4	375	23	30	10	36	1.88
637504--637649	27	5.2	26	72	16	114	22	28	13	36	1.91
637480--637607	61	2.1	59	80	9	134	24	30	10	34	1.90
637497--637623	60	2.1	59	82	8	150	20	27	12	39	1.89
637651--637818	32	5.2	32	79	7	126	29	32	17	21	1.96
637651--637807	65	2.4	64	81	3	172	29	31	18	19	1.96
637930--638277	104	3.4	101	77	7	331	24	20	15	39	1.92
638689--638765	20	3.9	19	75	8	73	29	10	12	46	1.76
650181--650222	11	3.6	11	84	12	57	80	11	4	2	0.95
650171--650229	23	2.6	22	80	17	75	79	8	6	5	1.04
651442--652152	28	24.9	28	86	5	852	28	29	17	23	1.97
652900--653053	40	3.6	40	70	20	130	29	14	12	43	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
652900--653056	20	7.3	20	69	19	84	29	14	12	43	1.81
652900--653085	91	2.1	89	87	3	264	27	13	12	45	1.80
656151--656283	52	2.6	51	84	5	169	23	22	17	36	1.94
657106--657162	20	2.8	20	89	0	78	33	15	10	40	1.82
659216--659287	20	3.7	19	86	3	81	29	16	15	38	1.89
659233--659288	19	2.9	19	89	2	76	30	16	16	37	1.90
666044--666070	12	2.2	12	100	0	54	33	14	18	33	1.92
670094--670132	20	2.0	19	95	5	69	35	23	10	30	1.88
670248--670272	13	1.9	13	100	0	50	36	16	16	32	1.90
675488--675513	13	2.0	13	100	0	52	38	15	15	30	1.88
677731--677775	21	2.1	21	84	8	56	53	4	20	22	1.63
679579--679609	15	2.1	15	93	0	53	48	16	22	12	1.80
681463--681494	8	4.0	8	100	0	64	12	0	25	62	1.30
681697--681735	13	3.0	13	100	0	78	30	15	15	38	1.88
686138--686169	8	3.9	8	95	4	55	12	0	25	62	1.30
686368--686403	13	2.8	13	95	0	63	33	16	16	33	1.92
686535--686598	22	3.0	22	88	6	98	39	21	0	39	1.54
686859--686899	20	2.0	21	85	9	57	21	48	24	4	1.69
688253--688283	16	1.9	16	93	0	53	41	0	16	41	1.48
688880--688904	13	1.9	13	100	0	50	32	16	16	36	1.90
689005--689030	13	2.0	13	100	0	52	30	15	15	38	1.88
688985--689052	33	2.1	32	89	8	102	33	19	14	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
692131--692239	47	2.3	47	93	0	155	36	22	11	28	1.90
694108--694149	22	1.9	22	90	0	66	35	4	35	23	1.76
694115--694170	22	2.5	22	91	0	85	35	1	35	26	1.67
694791--694823	13	2.5	13	95	0	57	36	15	15	33	1.88
695730--695787	23	2.5	22	78	13	55	86	10	1	1	0.73
695733--695787	20	2.8	20	86	5	67	85	10	1	1	0.75
695730--695801	31	2.3	32	85	7	94	84	8	4	2	0.84
696902--697737	61	13.8	61	83	5	964	25	27	19	27	1.99
697721--698077	85	4.3	83	76	10	302	21	26	13	39	1.89
697756--698074	41	7.6	41	74	12	238	20	25	13	40	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15