genome.fa.s267.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold267
Parameters: 2 7 7 80 10 50 1000
Length:  2306539

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  7  of  15  ( 1685 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1029262--1029515	113	2.3	113	78	6	273	38	12	21	26	1.89
1029686--1030314	31	19.8	31	78	5	440	21	16	29	32	1.95
1029686--1030325	97	6.7	93	80	3	562	22	16	29	31	1.95
1030319--1030618	61	4.9	60	75	11	229	35	12	29	23	1.91
1030319--1030701	89	4.2	90	72	13	270	35	12	28	23	1.91
1030319--1030493	62	2.8	60	86	3	224	34	13	29	22	1.92
1030341--1030450	34	3.4	34	75	19	119	40	13	27	18	1.88
1030501--1030594	33	2.9	33	79	6	95	35	10	29	24	1.89
1030403--1030614	28	6.8	32	73	11	129	35	11	28	24	1.90
1030499--1030606	30	3.4	31	83	3	110	33	11	29	25	1.91
1030319--1030618	28	9.9	31	70	15	110	35	12	29	23	1.91
1030647--1030926	29	9.7	29	74	8	189	32	15	29	22	1.94
1030676--1030938	59	4.5	58	75	12	218	33	14	28	23	1.94
1030656--1030876	112	2.0	112	94	0	388	31	15	29	23	1.95
1030647--1030818	27	6.1	28	72	12	120	33	13	30	22	1.93
1030852--1030945	31	3.0	31	85	0	134	36	12	27	23	1.91
1030711--1030945	56	4.0	61	76	10	170	33	14	28	23	1.94
1032114--1032189	29	2.6	28	80	15	82	3	13	9	73	1.21
1037239--1037264	13	2.0	13	100	0	52	38	15	15	30	1.88
1037217--1037284	33	2.1	32	91	2	109	36	14	13	35	1.85
1039820--1039858	13	3.0	13	88	0	60	33	12	20	33	1.91
1046909--1046934	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1046891--1046955	32	2.0	32	87	6	94	40	18	13	27	1.89
1055249--1055274	13	2.0	13	100	0	52	38	15	15	30	1.88
1060845--1060876	17	1.9	17	93	6	57	56	9	6	28	1.55
1061773--1061839	7	8.9	8	76	15	54	0	22	0	77	0.77
1061765--1061839	28	2.7	29	84	14	95	0	21	0	78	0.75
1061765--1061839	29	2.6	28	86	14	93	0	21	0	78	0.75
1061766--1061840	33	2.3	32	84	8	98	0	20	0	80	0.72
1061769--1061841	8	8.6	8	73	11	65	0	20	0	79	0.73
1062507--1062566	20	2.9	22	78	16	65	40	0	1	58	1.08
1062517--1062556	19	2.1	20	86	9	57	40	0	0	60	0.97
1062469--1062608	69	2.0	69	83	6	174	42	0	2	53	1.20
1063938--1063995	21	2.5	24	81	15	70	48	3	1	46	1.29
1069813--1069933	52	2.3	52	95	0	215	29	18	17	34	1.94
1069816--1069953	52	2.7	52	87	4	190	31	17	17	33	1.93
1069942--1069966	13	1.9	13	100	0	50	36	16	16	32	1.90
1070029--1070053	13	1.9	13	100	0	50	32	16	16	36	1.90
1070929--1071533	43	12.7	52	76	14	360	32	17	24	24	1.97
1071036--1071544	43	11.1	43	80	12	543	31	17	25	24	1.97
1070983--1071544	92	6.1	92	93	1	892	32	17	25	24	1.97
1071560--1072189	34	19.5	33	76	13	403	31	13	33	21	1.92
1071581--1071790	27	7.1	27	72	17	150	30	13	34	21	1.92
1071582--1072056	61	7.3	61	79	12	356	31	13	34	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1071731--1072057	33	9.7	33	80	10	306	31	13	34	20	1.91
1071731--1072189	31	13.9	33	80	12	335	31	13	33	21	1.92
1072031--1072192	32	5.2	30	85	9	191	29	14	32	23	1.95
1075077--1075122	12	4.2	12	73	21	55	32	8	13	45	1.73
1075057--1075122	32	2.1	32	91	5	107	31	10	12	45	1.76
1076014--1076052	20	1.9	21	89	5	62	23	10	10	56	1.63
1079327--1079372	22	2.1	22	87	0	65	10	15	6	67	1.40
1082419--1082634	105	2.1	105	99	0	423	29	11	26	32	1.91
1089173--1089213	12	3.5	12	81	15	50	85	7	4	2	0.81
1089173--1089224	24	2.1	25	85	3	70	84	7	3	3	0.85
1090444--1091502	28	37.1	28	83	5	1164	29	30	17	22	1.96
1092011--1092085	20	3.8	19	82	7	87	34	12	12	41	1.79
1092996--1093034	20	1.9	21	89	5	62	23	10	10	56	1.63
1098921--1099214	92	3.3	87	80	7	308	30	20	22	25	1.98
1098901--1099215	87	3.5	89	79	8	354	31	20	22	25	1.98
1099236--1099330	29	3.3	30	79	10	117	15	16	33	33	1.91
1099282--1099337	29	1.9	29	88	0	85	21	19	33	25	1.97
1099356--1099565	35	6.1	35	81	7	223	37	10	30	21	1.87
1099358--1099543	36	5.3	36	81	10	181	40	9	30	19	1.83
1099353--1099564	68	3.1	67	84	6	255	37	10	30	21	1.87
1099555--1099770	28	7.5	29	80	6	224	19	17	31	31	1.95
1099555--1099767	29	7.4	29	81	4	225	19	17	31	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1099536--1099767	87	2.7	87	91	0	365	21	17	31	29	1.96
1101198--1101368	1	171.0	1	67	0	90	0	7	8	83	0.84
1101198--1101368	35	4.8	35	76	14	147	0	7	8	83	0.84
1101190--1101368	46	3.9	43	79	13	164	0	7	8	83	0.85
1101201--1101366	72	2.3	71	83	8	205	0	7	8	83	0.85
1101188--1101367	74	2.4	74	81	8	204	0	7	8	82	0.86
1101198--1101370	31	5.3	31	75	14	127	0	7	8	83	0.85
1101247--1101352	25	4.4	24	80	13	112	0	10	5	83	0.79
1101247--1101358	24	4.6	24	78	16	113	0	9	5	83	0.83
1101188--1101367	54	3.3	53	75	14	163	0	7	8	82	0.86
1115201--1115299	52	1.9	52	87	4	146	32	16	19	32	1.94
1115288--1115312	13	1.9	13	100	0	50	36	16	16	32	1.90
1115357--1115408	13	3.5	13	73	26	50	36	17	13	32	1.89
1115365--1115427	19	3.7	18	74	24	64	38	17	11	33	1.85
1115357--1115442	32	2.7	32	92	0	145	39	17	10	32	1.84
1115416--1115440	13	1.9	13	100	0	50	40	16	8	36	1.77
1117293--1117321	5	5.8	5	100	0	58	41	17	20	20	1.90
1117902--1117955	22	2.4	22	78	12	65	61	0	0	38	0.96
1117909--1117955	21	2.2	21	88	3	67	63	0	0	36	0.94
1120363--1120387	2	12.5	2	100	0	50	48	0	0	52	1.00
1120683--1120717	17	2.0	17	94	5	61	60	0	0	40	0.97
1120933--1120964	8	4.1	8	96	4	57	78	0	0	21	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1122141--1122180	19	2.2	19	86	13	57	50	5	2	42	1.37
1124563--1124597	2	17.5	2	100	0	70	48	0	0	51	1.00
1125270--1125335	33	2.0	33	84	3	87	43	10	0	45	1.38
1125540--1125596	25	2.4	23	79	5	60	35	1	0	63	1.05
1125569--1125702	67	2.0	66	81	11	157	38	0	0	59	1.08
1125561--1125909	125	2.8	124	86	7	446	41	1	1	56	1.14
1125810--1125843	17	2.0	17	88	0	50	29	0	0	70	0.87
1125804--1125843	18	2.2	18	86	8	55	35	2	0	62	1.09
1125801--1125846	19	2.4	19	75	17	51	39	2	0	58	1.10
1125593--1125978	125	3.1	123	76	17	367	43	1	1	53	1.15
1128609--1128683	34	2.2	34	78	4	89	53	8	4	34	1.49
1128678--1128737	19	3.1	18	74	21	66	51	1	5	41	1.33
1128907--1128933	3	9.0	3	100	0	54	66	0	0	33	0.92
1129064--1129088	13	1.9	13	100	0	50	36	0	16	48	1.46
1129301--1129332	3	10.7	3	100	0	64	65	0	0	34	0.93
1129331--1129362	3	10.7	3	93	0	55	34	3	0	62	1.11
1129716--1129765	18	2.8	18	81	3	57	80	8	6	6	1.04
1130679--1130723	21	2.1	21	87	0	63	53	2	6	37	1.40
1132075--1132122	16	3.0	16	82	17	64	54	0	0	45	0.99
1132565--1132650	41	2.1	41	85	8	113	54	0	4	40	1.21
1133162--1133221	31	1.9	32	83	10	79	51	6	11	30	1.64
1135667--1135717	18	2.8	18	93	3	84	50	5	0	43	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1135667--1135717	2	26.0	2	84	4	68	50	5	0	43	1.26
1136139--1136183	20	2.2	21	88	4	65	8	17	0	73	1.08
1138325--1138378	19	2.8	19	97	0	99	42	12	16	27	1.85
1143652--1143719	19	3.9	19	78	21	85	35	11	14	38	1.83
1143654--1143716	32	2.0	32	96	0	117	34	12	15	36	1.86
1143673--1143697	13	1.9	13	100	0	50	36	16	16	32	1.90
1143759--1143784	12	2.2	12	100	0	52	30	15	19	34	1.93
1143738--1143803	32	2.1	32	85	0	87	27	16	15	40	1.88
1146148--1146489	52	6.5	53	69	13	206	29	26	12	31	1.92
1146262--1146333	27	2.6	27	89	6	101	26	30	20	22	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15