genome.fa.s35.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold35
Parameters: 2 7 7 80 10 50 1000
Length:  4812169

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   

This is table  30  of  30  ( 3549 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4714627--4714879	50	5.1	50	83	3	285	32	16	16	33	1.92
4714620--4714879	100	2.6	100	83	2	326	32	16	16	34	1.92
4719262--4719521	50	5.2	50	86	1	342	30	17	18	33	1.94
4725921--4727039	28	39.0	28	84	8	1296	21	18	31	27	1.97
4725989--4727038	283	3.7	284	86	6	1360	21	18	32	27	1.97
4725915--4727040	255	4.4	257	90	3	1576	22	18	31	27	1.97
4728261--4728320	1	60.0	1	79	0	66	1	1	6	90	0.59
4728261--4728320	14	4.2	14	87	8	77	1	1	6	90	0.59
4728261--4728318	24	2.4	24	91	2	89	1	1	6	89	0.61
4733042--4733166	52	2.4	52	94	2	216	29	17	18	34	1.94
4733042--4733186	52	2.8	50	87	8	193	31	17	18	33	1.94
4733175--4733199	13	1.9	13	100	0	50	36	16	16	32	1.90
4733265--4733289	13	1.9	13	100	0	50	32	16	16	36	1.90
4733243--4733309	33	2.0	33	88	0	98	40	13	11	34	1.81
4744725--4744754	15	1.9	16	93	6	53	70	0	6	23	1.11
4746216--4746245	2	15.0	2	100	0	60	50	0	0	50	1.00
4746771--4746795	2	12.5	2	100	0	50	52	48	0	0	1.00
4750094--4750124	3	10.0	3	93	6	53	64	0	0	35	0.94
4751003--4751036	17	1.9	17	88	5	50	61	0	0	38	0.96
4751430--4751483	25	2.2	25	83	9	67	48	3	3	44	1.38
4753689--4753730	22	1.9	22	90	0	66	50	0	0	50	1.00
4753763--4753795	16	2.1	16	94	5	59	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4753769--4753805	16	2.4	16	86	8	51	40	0	0	59	0.97
4754040--4754151	50	2.2	50	85	3	145	29	16	16	36	1.92
4755957--4757237	218	5.9	217	87	5	1722	44	7	9	39	1.64
4757602--4757664	25	2.5	26	75	12	60	47	1	6	44	1.38
4758177--4758228	26	2.0	27	84	3	70	42	3	1	51	1.31
4759546--4759606	4	14.2	4	77	13	59	3	27	0	68	1.05
4759546--4759606	13	4.7	13	76	13	54	3	27	0	68	1.05
4759994--4760043	27	1.9	25	84	8	64	54	4	2	40	1.31
4761042--4761081	18	2.3	18	86	4	55	52	0	2	45	1.14
4764333--4764503	51	3.6	51	74	18	186	40	11	18	29	1.85
4764379--4764546	20	7.8	20	76	18	160	39	11	17	30	1.86
4764333--4764553	91	2.4	91	94	1	390	38	12	18	30	1.87
4765438--4766278	28	29.5	28	84	3	1000	23	16	30	29	1.96
4765409--4766278	57	15.2	57	86	2	1113	23	16	30	29	1.96
4765438--4766278	85	9.8	85	83	4	944	23	16	30	29	1.96
4767526--4767592	8	8.4	8	74	11	57	2	2	10	83	0.86
4767544--4767590	18	2.5	19	93	6	78	0	2	10	87	0.63
4777273--4777312	19	2.1	19	85	0	53	70	7	10	12	1.35
4781551--4781718	20	7.8	20	70	18	115	39	11	17	30	1.86
4781503--4781725	91	2.5	91	91	0	356	40	12	17	28	1.87
4783329--4783372	21	2.1	21	83	8	54	38	27	6	27	1.82
4788955--4789046	33	2.8	32	73	11	96	65	3	27	4	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4790774--4790798	13	1.9	13	100	0	50	40	20	16	24	1.91
4791186--4791698	254	2.0	254	96	1	958	32	21	7	38	1.83
4792944--4792969	13	2.0	13	100	0	52	38	15	15	30	1.88
4792921--4792989	34	2.1	32	86	10	95	34	15	14	34	1.89
4793069--4793093	13	1.9	13	100	0	50	36	16	16	32	1.90
4795548--4795586	13	3.0	13	84	0	51	38	12	15	33	1.85
4799991--4800495	79	6.4	79	86	2	629	33	14	24	27	1.95
4800077--4800128	28	1.9	27	84	7	70	28	21	28	21	1.98
4799991--4800495	237	2.1	238	85	2	703	33	14	24	27	1.95
4800424--4800664	102	2.4	102	83	5	308	34	10	24	30	1.89
4800426--4800662	51	4.6	52	81	7	263	34	10	24	30	1.90
4802986--4803016	13	2.4	13	94	0	53	38	16	12	32	1.86
4802964--4803038	33	2.3	33	92	0	132	42	12	16	29	1.83
4802947--4803053	20	5.7	19	72	18	82	41	13	15	29	1.85
4803092--4803117	13	2.0	13	100	0	52	38	15	15	30	1.88
4805013--4805037	13	1.9	13	100	0	50	36	16	16	32	1.90
4804993--4805059	33	2.0	33	88	0	98	32	11	14	40	1.83
4805100--4805124	13	1.9	13	100	0	50	32	16	16	36	1.90
4805099--4805226	69	1.9	67	87	9	190	30	17	16	35	1.93
4805164--4805214	17	2.7	19	85	11	70	33	15	11	39	1.84
4809716--4809764	13	4.2	13	70	24	54	34	16	16	32	1.91
4809716--4809784	34	2.1	32	89	10	104	33	15	15	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4809864--4809888	13	1.9	13	100	0	50	36	16	16	32	1.90
4810895--4810924	15	2.0	15	100	0	60	6	33	13	46	1.69
4811880--4811921	13	3.2	13	89	0	66	45	16	11	26	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30

The End!