genome.fa.s39.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold39
Parameters: 2 7 7 80 10 50 1000
Length:  4724573

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   

This is table  27  of  27  ( 3195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4605610--4605753	51	2.8	51	79	8	175	34	11	22	31	1.89
4607033--4607139	20	5.7	19	76	18	100	41	12	16	29	1.85
4607053--4607122	33	2.1	33	94	0	122	40	11	18	30	1.86
4607033--4607139	53	2.0	53	85	7	146	41	12	16	29	1.85
4607073--4607102	13	2.3	13	94	0	51	40	10	16	33	1.82
4607155--4607184	13	2.3	13	94	0	51	40	10	16	33	1.82
4607748--4607881	41	3.2	40	70	13	110	41	11	29	17	1.84
4607885--4608049	42	3.8	43	77	12	169	42	12	26	19	1.86
4607898--4608044	45	3.4	44	82	8	133	44	10	27	17	1.81
4608039--4608443	61	6.6	62	84	3	487	30	19	25	25	1.98
4608039--4608443	123	3.3	121	85	3	535	30	19	25	25	1.98
4608432--4608749	44	7.2	43	81	9	320	37	12	29	20	1.90
4608725--4609091	62	6.0	62	83	8	432	27	19	26	26	1.99
4608975--4609114	56	2.5	55	85	4	183	27	20	24	27	1.99
4609130--4610082	55	16.5	60	84	8	1009	27	20	25	26	1.99
4610099--4610927	55	14.4	59	84	7	865	26	20	26	26	1.99
4610099--4610927	176	4.8	169	86	5	983	26	20	26	26	1.99
4609255--4611700	845	2.9	839	88	4	3498	26	20	26	26	1.99
4610372--4610900	61	8.9	60	83	8	615	27	19	26	26	1.99
4610845--4611019	94	1.9	95	91	3	291	25	20	29	25	1.99
4610941--4611667	55	12.9	55	84	7	870	23	20	27	28	1.99
4610941--4611702	110	6.7	115	86	5	965	24	20	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4617879--4617992	51	2.2	51	81	3	131	34	14	22	28	1.93
4617924--4618071	79	1.9	79	87	2	217	32	14	25	27	1.94
4618007--4618122	51	2.3	51	89	3	171	30	12	26	31	1.92
4617879--4618153	130	2.1	130	83	2	347	34	13	24	28	1.93
4618105--4618178	28	2.6	28	76	4	78	29	21	27	21	1.99
4618250--4618389	51	2.7	51	79	0	163	35	10	22	32	1.87
4620703--4620772	33	2.1	33	94	0	122	41	12	17	28	1.86
4620683--4620789	53	2.0	53	85	7	146	42	13	15	28	1.85
4620723--4620752	13	2.3	13	94	0	51	43	13	13	30	1.82
4620683--4620789	20	5.7	19	76	18	100	42	13	15	28	1.85
4620805--4620834	13	2.3	13	94	0	51	40	16	13	30	1.87
4621543--4621638	50	2.1	44	74	22	99	56	23	6	13	1.60
4621556--4621657	50	2.0	50	98	0	195	53	25	4	15	1.62
4628286--4628321	18	1.9	19	88	5	56	33	0	0	66	0.92
4628981--4629050	34	2.1	32	82	12	79	37	1	2	58	1.22
4629892--4629936	21	2.1	21	95	0	81	28	2	4	64	1.25
4633509--4633581	21	3.5	21	78	10	71	36	15	19	28	1.92
4646339--4646393	23	2.3	23	84	9	67	81	14	1	1	0.85
4647820--4648073	34	7.5	33	82	6	271	24	22	17	35	1.95
4647819--4648066	101	2.4	101	87	4	331	24	22	16	36	1.94
4647820--4648104	67	4.3	67	81	8	314	25	23	17	34	1.96
4648223--4648514	52	5.6	51	77	7	264	23	25	15	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4650451--4650491	20	2.0	21	95	4	75	34	12	19	34	1.89
4662354--4662602	97	2.6	96	89	3	374	30	13	27	28	1.94
4664299--4664349	11	5.0	10	77	11	50	1	23	1	72	1.05
4665671--4665830	32	5.2	32	79	8	156	23	19	30	26	1.98
4665669--4666101	28	14.8	28	82	6	391	23	17	30	28	1.97
4665746--4666651	27	32.6	27	82	6	605	27	16	31	25	1.96
4672768--4673103	96	3.5	96	88	2	505	29	12	28	29	1.93
4674833--4674858	10	2.6	10	100	0	52	0	11	0	88	0.52
4674815--4674852	13	3.0	13	84	3	51	0	18	0	81	0.69
4676568--4676724	63	2.5	62	86	4	212	35	14	16	33	1.89
4681457--4681610	44	3.6	44	76	6	138	40	17	30	11	1.85
4681458--4681678	85	2.6	85	77	2	230	38	17	30	13	1.88
4681641--4681833	42	4.6	42	73	11	171	35	19	29	16	1.93
4681638--4681833	83	2.3	83	81	10	222	34	19	29	16	1.94
4681688--4681860	85	2.1	83	87	4	249	35	19	28	16	1.94
4681717--4683404	42	40.0	42	71	8	813	34	18	27	19	1.95
4681688--4681907	85	2.6	85	81	6	225	35	19	27	17	1.94
4681845--4683452	85	19.0	85	76	6	960	35	17	27	19	1.95
4681718--4682041	127	2.5	127	76	5	314	36	17	27	18	1.94
4681847--4683452	760	2.1	761	80	4	1774	35	17	27	19	1.95
4701437--4701488	20	2.7	20	93	3	88	28	11	19	40	1.86
4701522--4701574	20	2.7	20	90	0	79	30	15	13	41	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4702215--4702254	21	1.9	21	84	0	53	57	10	7	25	1.57
4708172--4708274	43	2.4	43	86	3	145	33	19	13	33	1.91
4708699--4708748	27	1.9	26	88	8	75	24	36	16	24	1.94
4715995--4716025	14	2.2	14	94	0	53	41	0	0	58	0.98
4718309--4718413	53	2.0	54	94	1	185	56	11	10	21	1.65
4719176--4719256	22	3.7	21	73	14	65	32	3	0	64	1.11
4719152--4719256	45	2.3	45	82	6	124	30	4	0	64	1.14
4719991--4720045	27	2.0	27	100	0	110	27	25	21	25	2.00
4720968--4721020	20	2.7	20	100	0	106	26	15	15	43	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27

The End!