genome.fa.s39.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold39
Parameters: 2 7 7 80 10 50 1000
Length:  4724573

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   

This is table  7  of  27  ( 3195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
914890--915391	159	3.2	154	69	16	369	33	14	20	31	1.93
914773--915391	316	2.0	317	85	2	850	33	14	20	31	1.93
915089--917325	947	2.3	949	84	4	2839	35	13	18	32	1.90
915089--917325	476	4.7	473	82	5	2577	35	13	18	32	1.90
917959--918058	33	3.0	33	100	0	200	45	21	18	16	1.86
919451--919509	27	2.2	27	93	0	100	38	8	25	27	1.84
921489--921565	32	2.4	32	91	0	127	40	12	23	23	1.89
921649--921689	21	2.0	21	85	9	57	36	12	14	36	1.84
925219--925250	16	2.0	16	100	0	64	37	18	12	31	1.88
927943--927996	20	2.7	20	88	11	76	35	18	14	31	1.91
928025--928080	19	2.9	19	86	2	67	39	14	16	30	1.88
928657--928722	22	3.0	21	89	10	98	34	24	4	36	1.76
930510--930544	16	2.1	18	89	10	56	11	0	42	45	1.40
932795--932847	20	2.6	21	82	8	65	28	16	16	37	1.91
938267--938323	19	2.9	19	84	2	78	35	15	14	35	1.88
946953--947011	13	5.1	13	73	26	69	30	15	13	40	1.86
946934--947011	32	2.4	32	93	2	129	29	15	14	41	1.86
947084--947129	13	4.0	13	69	30	50	34	13	15	36	1.86
947061--947129	33	2.1	33	88	0	102	33	14	15	36	1.89
947088--947127	20	2.0	20	95	0	71	37	12	15	35	1.85
947909--947963	19	2.9	19	100	0	110	40	16	16	27	1.89
947948--947974	13	2.1	13	100	0	54	40	14	14	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
950214--950333	51	2.4	51	81	2	125	28	27	15	29	1.96
950266--950498	79	2.9	79	86	5	326	28	27	12	31	1.93
950265--950498	80	2.9	79	87	1	335	28	26	13	31	1.94
950265--950549	79	3.6	81	84	3	303	27	25	13	32	1.94
952504--952557	20	2.8	19	77	5	63	29	14	14	40	1.86
953370--956181	477	5.9	477	84	2	3428	36	13	18	31	1.89
956769--956843	20	3.8	20	80	0	87	32	14	13	40	1.85
964583--964650	33	2.1	32	86	8	93	36	14	14	33	1.87
970942--970985	22	2.0	21	83	16	54	36	25	0	38	1.56
973329--973353	13	1.9	13	100	0	50	32	16	16	36	1.90
973308--973370	33	1.9	32	87	3	90	33	20	15	30	1.94
973442--973467	13	2.0	13	100	0	52	30	15	15	38	1.88
973422--973489	33	2.1	32	91	8	111	35	16	16	32	1.91
980818--980902	9	9.1	9	77	11	82	82	11	1	4	0.88
980821--980903	8	9.8	8	75	12	60	83	10	1	4	0.86
980818--980888	28	2.6	27	86	4	106	83	9	1	5	0.87
980818--980903	15	6.1	15	72	9	56	82	11	1	4	0.87
982149--982517	28	12.8	28	82	4	389	29	28	17	24	1.97
982598--982715	49	2.5	47	81	9	125	22	27	20	30	1.98
983430--983486	20	2.8	20	81	0	69	31	12	15	40	1.85
986704--1000720	474	29.8	475	81	4	14185	37	13	18	31	1.89
1001085--1001109	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1003325--1003369	21	2.1	21	84	8	56	53	4	20	22	1.63
1006167--1006211	21	2.1	21	84	8	56	53	4	20	22	1.63
1010104--1010129	13	2.0	13	100	0	52	30	15	15	38	1.88
1010250--1010295	21	2.2	20	81	11	58	32	19	4	43	1.71
1012657--1012681	13	1.9	13	100	0	50	36	16	16	32	1.90
1015551--1015600	20	2.5	20	80	3	57	28	14	22	36	1.92
1015882--1018393	473	5.3	471	82	4	2866	35	14	18	31	1.91
1015882--1018393	951	2.6	944	83	4	3146	35	14	18	31	1.91
1018757--1018808	19	2.7	20	87	6	79	38	19	13	28	1.89
1021005--1021049	21	2.1	21	84	8	56	53	4	20	22	1.63
1022852--1022882	15	2.1	15	93	0	53	48	16	22	12	1.80
1024961--1024986	13	2.0	13	100	0	52	30	15	15	38	1.88
1027530--1027555	13	2.0	13	100	0	52	38	15	15	30	1.88
1027512--1027575	32	2.0	33	90	3	103	39	18	14	28	1.90
1029287--1030887	158	10.1	158	68	10	798	37	13	18	31	1.89
1028362--1038294	477	20.9	474	83	4	10989	36	14	17	31	1.90
1046848--1046878	13	2.4	13	94	0	53	35	12	16	35	1.87
1046828--1047041	32	6.0	33	74	19	121	35	16	16	31	1.92
1046923--1047011	19	4.9	19	78	18	100	37	16	16	29	1.92
1046964--1047022	13	5.1	13	76	23	69	40	15	15	28	1.87
1046945--1047041	32	3.0	32	95	1	167	40	15	16	27	1.89
1047352--1051824	476	9.5	474	78	6	4415	36	13	18	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1047329--1051824	953	4.8	947	82	4	5093	36	13	18	31	1.90
1051831--1053542	468	3.6	471	80	5	1797	36	13	18	31	1.90
1053562--1057477	476	8.3	475	82	5	4259	37	13	17	31	1.89
1053562--1057477	475	8.3	472	81	5	4012	37	13	17	31	1.89
1060737--1060788	13	3.5	13	73	26	50	36	17	13	32	1.89
1060745--1060807	19	3.7	18	76	24	73	36	17	12	33	1.88
1060737--1060807	32	2.2	32	97	0	133	36	18	12	32	1.88
1061874--1061907	17	2.0	17	94	0	59	20	11	20	47	1.81
1064117--1064169	20	2.6	21	81	3	63	39	13	16	30	1.87
1064192--1064254	19	3.6	19	72	24	75	39	19	11	30	1.86
1064194--1064289	32	3.0	32	93	1	156	38	19	10	31	1.86
1064211--1064268	13	4.0	13	72	23	53	36	17	12	34	1.87
1070396--1070420	13	1.9	13	100	0	50	32	16	20	32	1.94
1070552--1070592	22	2.0	20	86	13	57	31	21	4	41	1.74
1072879--1072903	13	1.9	13	100	0	50	32	16	16	36	1.90
1072891--1072943	20	2.6	21	78	3	63	41	15	15	28	1.87
1072976--1073027	20	2.7	20	90	3	79	38	21	11	28	1.88
1073772--1077912	476	8.7	475	82	2	4793	36	13	18	30	1.90
1077884--1082035	475	8.7	470	76	9	3094	36	13	17	31	1.90
1077884--1082066	476	8.7	474	73	11	2992	36	13	17	31	1.89
1080054--1080114	31	2.0	31	93	6	106	36	9	27	26	1.88
1082208--1083256	476	2.2	473	80	3	1194	37	14	18	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1083449--1084611	477	2.4	474	83	3	1460	36	14	17	31	1.91
1088666--1088722	20	2.8	20	83	0	78	31	10	14	43	1.79
1090187--1097190	474	14.8	474	82	4	7679	36	14	18	30	1.90
1093212--1093890	159	4.3	159	66	13	380	36	14	18	30	1.90
1097397--1098316	470	1.9	472	83	5	1169	36	13	18	31	1.89
1098323--1099572	476	2.6	473	84	2	1659	36	12	17	32	1.88
1099525--1099621	49	2.0	49	83	0	122	31	15	17	35	1.91
1099805--1102003	475	4.7	474	81	5	2469	36	14	18	30	1.91
1099805--1101982	930	2.3	933	82	4	2575	36	14	18	30	1.91
1103592--1103696	54	1.9	54	84	3	140	25	27	13	33	1.93
1103590--1103701	27	4.1	27	82	0	125	24	30	12	33	1.92
1103764--1103843	33	2.5	32	83	4	106	22	32	11	33	1.89
1103789--1103892	34	3.1	35	85	9	119	17	30	12	39	1.87
1103861--1103915	27	2.0	27	85	0	74	23	36	12	27	1.91
1103947--1104786	52	16.9	52	71	13	410	25	25	16	33	1.96
1104050--1104135	43	2.0	43	90	0	136	27	23	16	32	1.96
1104052--1104120	22	3.2	22	69	19	63	26	24	14	34	1.94
1104001--1104292	95	3.1	94	82	3	361	26	24	15	33	1.95
1104096--1104437	149	2.3	147	81	3	382	25	25	16	33	1.96
1103957--1104585	244	2.6	242	83	2	776	25	25	15	33	1.95
1104246--1104530	95	3.0	93	84	3	347	25	25	15	32	1.95
1104389--1104784	148	2.6	153	78	9	363	24	26	16	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1104731--1104869	61	2.3	61	87	2	199	23	26	12	37	1.91
1106471--1106535	34	1.9	33	87	3	94	24	27	15	32	1.95
1106570--1106690	27	4.5	27	85	0	161	23	33	13	30	1.93
1106512--1106711	81	2.4	84	78	9	228	22	31	14	32	1.93
1106769--1106840	35	2.1	35	91	0	117	19	31	8	40	1.81
1106514--1106926	27	13.6	32	73	13	154	21	32	12	33	1.91
1107014--1107301	95	3.0	94	82	4	328	24	27	15	31	1.96
1107109--1107559	52	8.9	51	71	9	228	23	27	16	33	1.96
1107501--1107637	61	2.2	61	88	0	202	21	27	12	37	1.90
1109308--1109397	27	3.3	27	88	0	108	26	34	12	26	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27