genome.fa.s42.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold42
Parameters: 2 7 7 80 10 50 1000
Length:  3911082

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  5  of  24  ( 2843 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
663773--663808	13	2.6	14	86	13	56	50	0	0	50	1.00
663762--663819	18	3.3	18	75	20	61	51	0	0	48	1.00
663762--663834	34	2.1	34	82	10	85	52	2	0	45	1.15
664087--664176	30	3.3	27	71	17	78	57	0	1	41	1.06
666180--666242	9	7.3	9	78	7	60	0	19	0	80	0.70
666185--666246	24	2.7	23	87	5	81	0	20	0	79	0.74
666362--666399	17	2.3	17	90	4	60	60	0	0	39	0.97
666790--666836	16	2.9	17	84	12	55	55	10	4	29	1.53
667264--667315	22	2.3	23	86	3	70	69	0	1	28	0.99
667275--667311	17	2.2	17	90	0	56	67	0	2	29	1.04
667277--667343	22	2.9	23	84	8	75	59	0	4	35	1.18
667915--667940	2	13.0	2	100	0	52	50	0	0	50	1.00
668026--668055	16	1.9	15	93	6	51	53	0	0	46	1.00
669854--669902	24	2.1	22	85	7	62	18	0	10	71	1.13
670728--670762	17	2.1	18	89	10	56	54	0	5	40	1.24
671016--671247	129	1.9	120	85	9	324	35	7	12	44	1.71
672397--672441	18	2.4	18	81	7	54	57	0	0	42	0.98
672842--672880	18	2.2	18	90	0	60	46	7	5	41	1.55
673176--673201	2	13.0	2	100	0	52	50	0	0	50	1.00
674354--674405	25	2.1	24	82	3	59	5	15	0	78	0.92
674877--674921	23	2.0	23	86	0	63	35	15	17	31	1.92
675018--675148	40	3.3	39	79	13	117	48	0	0	50	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
675135--675178	16	2.8	17	83	13	58	43	0	0	56	0.99
675452--675502	25	2.0	25	100	0	102	23	15	19	41	1.90
677271--677318	19	2.6	19	83	9	64	41	0	0	58	0.98
677271--677340	24	2.9	24	79	10	72	42	0	0	57	0.99
679408--679439	16	2.0	16	100	0	64	81	0	6	12	0.87
679444--679500	21	2.7	21	97	0	105	33	10	19	36	1.86
679556--679623	19	3.9	19	78	21	85	35	11	14	38	1.83
679577--679601	13	1.9	13	100	0	50	36	16	16	32	1.90
679558--679620	32	2.0	32	96	0	117	34	12	15	36	1.86
679663--679688	13	2.0	13	100	0	52	30	15	15	38	1.88
679643--679709	33	2.0	33	88	0	98	25	14	16	43	1.86
682156--682228	27	2.7	27	87	6	94	23	34	21	20	1.97
682211--682381	51	3.3	51	79	4	198	29	26	11	32	1.92
682364--682445	28	2.9	28	82	7	96	24	31	17	26	1.97
694844--694908	15	4.4	15	78	3	69	86	3	9	1	0.75
694843--694892	1	50.0	1	79	0	55	90	4	4	2	0.62
695874--696826	55	17.3	55	92	3	1425	28	30	20	20	1.98
696112--696200	29	3.2	29	67	20	89	28	33	19	19	1.96
696141--696230	26	3.3	26	68	14	74	28	33	17	20	1.95
697419--697448	15	2.0	15	100	0	60	80	0	6	13	0.91
697458--697535	21	3.7	21	98	0	147	32	10	20	37	1.86
697457--697555	42	2.4	42	86	3	137	34	13	18	34	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
697591--697658	19	3.9	19	78	21	85	35	11	14	38	1.83
697612--697636	13	1.9	13	100	0	50	36	16	16	32	1.90
697593--697655	32	2.0	32	96	0	117	34	12	15	36	1.86
697698--697723	13	2.0	13	100	0	52	30	15	15	38	1.88
697678--697744	33	2.0	33	88	0	98	25	14	16	43	1.86
700191--700263	27	2.7	27	87	6	94	23	34	21	20	1.97
700246--700416	51	3.3	51	79	4	198	29	26	11	32	1.92
700399--700480	28	2.9	28	82	7	96	24	31	17	26	1.97
703246--703322	21	3.7	21	89	3	111	33	12	16	36	1.88
703359--703454	19	5.7	19	66	26	72	34	11	17	36	1.86
703360--703462	32	3.2	32	92	0	170	33	11	18	35	1.87
703506--703531	13	2.0	13	100	0	52	30	15	15	38	1.88
703486--703552	34	2.0	33	85	2	89	25	13	13	47	1.79
703570--703624	20	2.8	20	100	0	110	34	14	10	40	1.81
704081--704112	11	3.1	11	86	13	50	78	21	0	0	0.76
710360--710505	60	2.4	60	95	0	265	26	26	19	27	1.99
711321--711437	51	2.4	51	84	12	147	30	23	11	33	1.91
711419--711495	27	2.8	27	90	5	111	23	33	19	23	1.97
711562--711705	51	2.8	51	78	6	146	29	25	9	34	1.88
711579--711728	52	2.9	52	79	5	144	30	25	9	34	1.87
711659--711843	79	2.3	80	82	4	232	27	25	14	32	1.94
711662--711909	79	3.1	78	80	4	228	26	26	14	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
713482--713522	3	13.7	3	100	0	82	65	0	0	34	0.93
714494--714561	32	2.2	31	80	14	79	48	1	8	41	1.43
714823--714877	16	3.4	16	76	0	65	43	14	14	27	1.84
715779--715830	21	2.5	21	84	6	61	34	3	26	34	1.75
719638--719862	79	2.8	79	81	4	247	31	16	27	24	1.96
719815--719886	28	2.6	28	86	4	92	22	20	36	20	1.96
719874--720041	50	3.3	51	78	6	180	30	10	27	30	1.91
719764--720203	209	2.1	210	91	2	722	30	12	28	27	1.93
722568--722593	13	2.0	13	100	0	52	38	15	15	30	1.88
722547--722613	34	2.0	33	91	2	107	44	13	16	25	1.84
723291--723315	13	1.9	13	100	0	50	36	16	16	32	1.90
724607--724647	21	2.0	21	90	0	64	39	4	17	39	1.71
725684--725749	33	2.0	33	100	0	132	33	9	18	39	1.82
726829--726858	13	2.3	13	100	0	60	36	16	6	40	1.75
726938--727136	104	1.9	104	81	4	240	25	24	14	35	1.93
727042--727208	79	2.1	79	85	0	217	26	26	13	33	1.93
729273--729306	4	8.2	4	90	3	50	23	0	5	70	1.09
739580--739660	1	81.0	1	70	0	54	85	9	4	0	0.74
739579--739646	10	7.0	10	80	11	79	85	13	1	0	0.67
739582--739633	8	6.9	8	82	8	65	86	13	0	0	0.57
739579--739625	11	4.5	11	86	7	71	85	14	0	0	0.61
739580--739632	22	2.4	22	93	6	90	86	13	0	0	0.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
739579--739635	21	2.8	20	84	10	78	85	14	0	0	0.59
740711--740801	29	3.2	29	66	20	84	27	31	18	21	1.97
740740--740880	27	5.2	26	63	18	72	27	29	20	21	1.98
740616--741160	55	9.5	56	86	7	656	27	28	20	23	1.99
741144--741355	42	5.2	40	68	19	111	19	26	14	39	1.91
741927--741965	21	1.9	20	94	5	69	35	15	12	35	1.86
742085--742168	33	2.6	32	90	3	132	40	13	10	35	1.79
742141--742166	13	2.0	13	100	0	52	38	15	7	38	1.76
742203--742276	20	3.7	19	87	7	103	28	16	13	41	1.86
744568--744696	51	2.5	51	85	0	159	28	21	11	37	1.89
744683--744753	28	2.5	28	93	0	124	22	32	22	22	1.98
744632--744835	107	1.9	107	89	4	322	25	28	17	28	1.98
744711--744909	79	2.5	79	93	0	335	25	27	17	29	1.97
744899--745047	79	1.9	79	88	0	226	28	25	11	34	1.91
744632--745033	186	2.2	186	83	1	502	26	26	15	31	1.95
748485--748918	166	2.6	166	86	4	574	52	8	10	28	1.64
757363--757397	3	11.7	3	87	0	52	28	31	0	40	1.57
764148--764306	25	6.4	23	68	16	95	42	5	1	50	1.33
764191--764323	9	15.4	9	81	9	161	42	6	0	51	1.32
764186--764323	17	8.1	17	94	1	240	40	5	1	52	1.34
764794--764831	2	19.5	2	94	5	69	47	0	0	52	1.00
765839--765878	19	2.1	19	85	0	53	35	2	0	62	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
766418--766452	2	17.5	2	100	0	70	0	48	0	51	1.00
767117--767161	21	2.0	22	87	8	65	51	0	0	48	1.00
767464--767502	5	8.0	5	88	11	55	82	0	17	0	0.68
767464--767500	18	2.0	20	89	10	60	83	0	16	0	0.64
767838--767884	23	2.1	23	88	4	69	36	2	4	57	1.30
767889--767923	17	2.0	18	94	5	63	42	0	0	57	0.99
767891--767957	17	4.2	16	75	21	54	40	0	0	59	0.97
767891--767951	30	2.1	28	85	14	81	42	0	0	57	0.98
768632--768765	69	1.9	69	82	5	164	43	2	5	48	1.40
768782--768825	23	1.9	23	95	0	79	22	2	6	68	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24