genome.fa.s42.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold42
Parameters: 2 7 7 80 10 50 1000
Length:  3911082

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  24  of  24  ( 2843 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3818686--3823845	476	10.9	476	85	2	6394	30	18	14	36	1.90
3818859--3824051	159	32.8	156	65	12	712	30	18	14	37	1.90
3829039--3829144	12	9.9	11	78	16	75	16	44	0	39	1.47
3829051--3829124	9	8.6	9	76	8	73	14	43	0	41	1.46
3829039--3829145	42	2.5	42	96	0	196	15	43	0	40	1.47
3830749--3834064	475	7.0	472	82	5	3773	30	19	14	36	1.91
3833187--3834926	872	2.0	872	85	2	2388	29	18	13	38	1.89
3834059--3835064	475	2.1	475	86	1	1433	30	18	13	37	1.89
3834809--3835325	264	2.0	262	88	1	766	30	16	14	37	1.89
3835073--3839308	476	8.9	474	83	3	4977	30	18	14	37	1.90
3838947--3839667	359	2.0	359	99	0	1415	31	19	14	34	1.92
3839309--3844205	476	10.3	477	84	2	6061	29	19	14	36	1.91
3844513--3844537	13	1.9	13	100	0	50	32	8	16	44	1.76
3844528--3844580	20	2.6	21	84	3	72	39	15	16	28	1.89
3844632--3844657	13	2.0	13	100	0	52	30	15	15	38	1.88
3844612--3844679	33	2.1	32	91	2	109	35	13	14	36	1.85
3846259--3846294	9	4.0	9	92	0	54	41	2	33	22	1.68
3850039--3850159	52	2.3	52	97	0	224	28	18	18	34	1.94
3850039--3850179	52	2.7	51	90	4	212	30	17	18	33	1.94
3850168--3850192	13	1.9	13	100	0	50	36	16	16	32	1.90
3850257--3850281	13	1.9	13	100	0	50	32	16	16	36	1.90
3850235--3850301	33	2.0	33	88	0	98	40	13	11	34	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3851238--3851804	49	11.6	49	85	6	735	32	17	25	24	1.97
3851171--3851804	98	6.4	99	92	4	911	32	17	25	24	1.96
3851871--3852358	35	14.1	35	86	7	633	34	11	33	20	1.88
3851858--3852358	33	14.4	35	83	9	591	33	11	34	20	1.88
3851876--3852359	176	2.8	173	88	5	705	34	11	33	20	1.88
3858664--3858720	20	2.8	20	83	0	69	38	14	15	31	1.87
3858706--3858734	13	2.2	13	100	0	58	31	17	13	37	1.89
3858722--3858774	20	2.6	21	84	3	72	39	15	16	28	1.89
3858826--3858851	13	2.0	13	100	0	52	30	15	15	38	1.88
3858806--3858873	33	2.1	32	88	2	100	35	16	14	33	1.89
3859614--3864442	476	10.1	476	82	3	5455	30	19	14	35	1.91
3859622--3864442	951	5.1	947	87	2	5932	30	19	14	35	1.91
3863621--3865867	793	2.8	794	93	0	3741	30	19	13	35	1.91
3864135--3864754	317	2.0	318	83	4	804	30	20	13	36	1.90
3864929--3866187	317	4.0	316	72	9	1081	30	19	13	36	1.90
3865722--3866016	158	1.9	158	89	2	459	28	19	10	41	1.85
3865214--3866493	634	2.0	634	92	0	2139	31	19	12	36	1.89
3864433--3866776	476	4.9	473	72	10	1599	31	19	13	36	1.90
3866935--3867527	316	1.9	317	87	2	870	30	19	14	35	1.92
3867699--3868359	316	2.1	317	82	4	771	29	18	14	38	1.89
3866855--3868796	792	2.5	791	89	2	2871	30	18	14	37	1.90
3868002--3871009	477	6.3	475	86	2	4012	29	18	14	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3866855--3869176	792	2.9	777	81	6	2517	30	18	14	36	1.90
3868002--3871009	952	3.2	949	88	1	4341	29	18	14	37	1.91
3870674--3871328	316	2.1	315	95	0	1184	27	20	15	37	1.92
3870202--3871725	793	1.9	791	86	2	2175	29	19	14	37	1.91
3870783--3871267	158	3.1	158	70	10	511	28	19	14	38	1.91
3870993--3872905	477	4.0	471	78	7	1686	29	19	14	36	1.91
3872597--3873261	316	2.1	317	83	3	802	29	18	14	37	1.90
3872118--3873699	793	2.0	796	86	2	2243	29	18	14	36	1.91
3872913--3883663	475	22.6	475	85	3	12411	29	19	14	36	1.91
3875405--3876063	158	4.2	158	66	16	376	28	20	14	37	1.91
3875405--3876116	159	4.5	159	67	15	366	27	19	14	37	1.91
3883369--3883975	316	1.9	317	86	1	869	30	19	13	37	1.90
3883498--3883975	158	3.0	155	66	13	355	30	19	14	35	1.92
3882892--3884455	792	2.0	791	87	3	2239	30	18	13	36	1.90
3883672--3885852	476	4.6	476	85	2	2798	29	18	14	37	1.90
3883249--3884837	792	2.0	790	81	5	1838	29	18	14	36	1.91
3883671--3885851	951	2.3	950	85	3	2926	29	18	14	37	1.90
3890943--3895164	476	8.9	475	85	2	5153	30	18	14	36	1.90
3891651--3894199	159	16.1	156	64	13	466	30	19	14	35	1.91
3896178--3896234	13	3.9	13	76	24	60	35	14	17	33	1.90
3896158--3896258	32	3.1	32	97	1	184	34	11	17	35	1.87
3896156--3896253	19	5.8	18	71	28	90	33	12	17	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3896297--3896321	13	1.9	13	100	0	50	32	16	16	36	1.90
3897504--3897585	29	3.0	29	59	20	68	37	23	10	28	1.88
3897482--3897585	52	2.0	52	100	0	208	36	21	13	28	1.91
3901959--3902086	51	2.5	52	97	1	240	28	18	18	33	1.95
3902074--3902099	13	2.0	13	100	0	52	38	15	15	30	1.88
3902137--3902205	32	2.1	33	94	2	122	36	17	11	34	1.86
3902161--3902185	13	1.9	13	100	0	50	32	16	16	36	1.90
3903112--3903362	58	4.3	58	86	3	312	19	15	31	32	1.94
3903112--3903356	27	8.5	27	76	13	213	19	16	31	33	1.94
3904791--3904898	13	7.9	13	75	20	80	1	1	14	81	0.86
3904791--3904896	48	2.3	46	83	6	124	1	1	14	82	0.85
3904792--3904896	41	2.6	42	82	11	114	1	1	14	81	0.85
3904791--3904895	20	5.3	19	79	16	90	1	1	14	81	0.85
3904815--3904894	36	2.3	35	84	6	99	2	2	12	82	0.87
3904803--3904898	32	3.1	30	74	17	90	2	2	13	82	0.85
3909810--3909835	13	2.0	13	100	0	52	30	15	15	38	1.88
3909790--3909853	32	2.0	33	87	3	94	28	14	17	40	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24

The End!