genome.fa.s74.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold74
Parameters: 2 7 7 80 10 50 1000
Length:  4633657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  14  of  24  ( 2862 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2844578--2844626	22	2.3	22	82	10	66	38	4	2	55	1.31
2847558--2847606	22	2.3	21	85	3	62	40	0	0	59	0.98
2847579--2847661	18	4.8	18	75	18	70	43	0	0	56	0.99
2847550--2847631	18	4.4	18	75	18	71	39	0	0	60	0.96
2849987--2850039	12	4.4	12	76	9	63	43	0	0	56	0.99
2849987--2850045	24	2.5	24	81	8	66	42	0	0	57	0.98
2849987--2850048	12	5.2	12	76	7	54	41	0	0	58	0.98
2850328--2850367	2	20.0	2	100	0	80	50	0	50	0	1.00
2852611--2852635	6	4.2	6	100	0	50	16	0	52	32	1.44
2857789--2857914	67	1.9	67	96	0	234	25	14	19	40	1.89
2858031--2858081	18	3.1	18	75	18	56	23	5	3	66	1.30
2858072--2858111	6	7.2	6	81	16	50	32	2	12	52	1.52
2858062--2858115	27	2.0	26	92	3	90	29	3	11	55	1.52
2873437--2873516	29	2.7	29	76	5	72	31	1	3	63	1.20
2873910--2873967	24	2.6	22	76	12	66	50	0	0	50	1.00
2873909--2873969	22	2.8	22	83	11	81	49	0	0	50	1.00
2878855--2878879	2	12.5	2	100	0	50	52	0	0	48	1.00
2888902--2888940	20	2.0	20	85	10	53	48	0	0	51	1.00
2888903--2888998	30	3.3	30	77	21	89	50	0	0	50	1.00
2889414--2889466	20	2.8	18	78	13	54	39	0	1	58	1.09
2889416--2889466	13	3.9	13	78	21	54	37	0	1	60	1.08
2890138--2890189	20	2.5	20	81	12	70	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2890403--2890436	2	17.0	2	87	0	50	44	0	5	50	1.26
2891391--2891440	19	2.7	18	73	11	55	38	4	2	56	1.30
2892236--2892273	2	20.0	2	89	10	62	50	0	0	50	1.00
2896685--2896714	2	15.0	2	100	0	60	50	0	0	50	1.00
2902042--2902078	17	2.1	17	95	5	65	67	0	0	32	0.91
2902042--2902078	18	2.1	18	95	5	58	67	0	0	32	0.91
2902049--2902107	17	3.4	17	72	9	55	54	0	0	45	0.99
2902954--2903008	20	2.8	19	83	8	65	58	1	0	40	1.09
2908469--2908542	30	2.5	29	82	8	87	51	0	1	47	1.09
2908482--2908542	29	2.0	30	84	6	79	54	0	1	44	1.10
2909174--2909203	2	15.0	2	92	0	51	46	0	0	53	1.00
2916347--2916377	15	2.1	15	93	0	53	45	0	0	54	0.99
2916354--2916409	24	2.4	24	77	14	62	57	1	0	41	1.09
2917011--2917084	34	2.2	33	84	13	91	55	0	0	44	0.99
2918644--2918680	2	18.5	2	100	0	74	51	0	0	48	1.00
2922844--2922882	2	19.5	2	91	0	51	53	5	41	0	1.23
2924679--2924743	20	3.2	19	73	18	60	69	1	0	29	0.98
2924698--2924746	14	3.1	16	85	8	57	67	0	0	32	0.91
2924704--2924766	26	2.4	26	76	7	65	61	0	0	38	0.96
2925604--2925642	20	2.0	20	90	9	64	25	12	51	10	1.71
2927211--2927272	24	2.6	24	78	14	65	51	0	1	46	1.10
2927374--2927425	25	2.0	26	88	3	79	61	1	0	36	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2927390--2927432	17	2.6	16	85	7	59	62	0	0	37	0.95
2928116--2928159	19	2.2	19	84	8	52	43	6	2	47	1.42
2928309--2928346	16	2.3	16	90	4	58	50	0	0	50	1.00
2928317--2928355	16	2.4	16	82	0	51	51	0	0	48	1.00
2928986--2929012	2	13.5	2	100	0	54	51	0	0	48	1.00
2935936--2935978	3	14.0	3	80	4	50	27	0	2	69	1.00
2936553--2936602	20	2.5	21	77	9	59	52	0	2	46	1.12
2942366--2942390	2	12.5	2	100	0	50	48	0	0	52	1.00
2943321--2943361	2	21.0	2	92	5	66	53	0	0	46	1.00
2943681--2943723	2	21.5	2	100	0	86	48	0	0	51	1.00
2945769--2945812	17	2.6	16	86	10	61	31	0	0	68	0.90
2948951--2949024	37	2.0	38	91	2	123	55	10	18	14	1.68
2951217--2951266	24	2.1	24	100	0	100	54	8	4	34	1.49
2953087--2953134	25	2.0	25	87	4	71	45	0	20	33	1.52
2960479--2960522	7	6.3	7	80	19	56	47	0	0	52	1.00
2961085--2961151	33	2.0	33	91	0	107	20	23	23	31	1.98
2961666--2961694	2	14.5	2	100	0	58	51	0	0	48	1.00
2966044--2966090	22	2.1	22	84	7	60	65	2	0	31	1.04
2967168--2967202	2	18.0	2	94	5	63	51	0	0	48	1.00
2967504--2967561	20	2.7	21	78	10	55	48	1	0	50	1.11
2967719--2967925	101	2.0	104	88	4	312	48	12	11	27	1.75
2971904--2971940	3	12.7	3	88	5	58	29	0	2	67	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2974044--2974261	34	6.5	34	85	5	282	40	27	7	24	1.82
2974042--2974261	67	3.3	67	88	1	323	40	27	7	24	1.82
2978327--2978389	19	3.3	19	90	0	90	34	19	17	28	1.94
2978694--2978876	34	5.4	34	86	5	246	39	28	8	24	1.84
2978694--2978876	101	1.8	102	93	1	323	39	28	8	24	1.84
2982743--2982773	6	5.2	6	100	0	62	16	32	35	16	1.91
2988793--2988853	27	2.3	26	81	10	70	36	0	1	62	1.05
2990779--2990825	3	15.0	3	86	8	58	40	0	0	59	0.97
2992462--2992495	11	2.9	12	86	8	52	52	2	5	38	1.41
2994387--2994562	27	6.5	27	68	23	95	56	2	0	41	1.12
2994443--2994568	15	8.5	15	67	20	70	57	2	0	38	1.17
2994514--2994559	10	4.6	10	76	17	51	60	0	0	39	0.97
2994967--2994991	13	1.9	13	100	0	50	28	0	0	72	0.86
2994967--2995014	15	3.4	14	86	8	53	29	2	0	68	1.01
2994942--2995016	33	2.2	33	83	7	87	36	1	1	61	1.13
2999010--2999057	24	2.0	24	83	4	60	43	4	4	47	1.41
3003501--3003548	23	2.0	25	84	8	64	52	0	0	47	1.00
3004708--3004745	2	19.0	2	94	0	67	47	0	0	52	1.00
3006629--3006662	16	2.1	16	88	0	50	88	11	0	0	0.52
3008184--3008257	32	2.2	33	83	7	96	58	0	0	41	0.98
3008203--3008252	17	3.1	17	72	21	61	52	0	0	48	1.00
3008202--3008262	32	1.9	31	93	3	104	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3008519--3008543	4	6.2	4	100	0	50	76	0	0	24	0.80
3008729--3008769	15	2.8	15	85	3	57	70	2	0	26	0.99
3009803--3009842	2	20.5	2	94	5	73	50	0	50	0	1.00
3015097--3015522	219	1.9	219	100	0	852	26	14	17	41	1.88
3016815--3016845	1	31.0	1	93	0	53	0	96	0	3	0.21
3020240--3020274	15	2.4	14	90	9	52	5	37	0	57	1.23
3021537--3021590	20	2.7	20	72	11	56	50	0	0	50	1.00
3021795--3021858	24	2.7	25	76	7	62	45	0	1	53	1.10
3023105--3023151	21	2.2	21	77	11	51	48	4	0	46	1.21
3023236--3023273	12	3.2	12	81	7	51	44	0	0	55	0.99
3028738--3028762	12	2.1	12	100	0	50	24	16	24	36	1.94
3029070--3029114	17	2.6	17	85	3	54	84	4	11	0	0.76
3032599--3032672	36	2.0	37	97	2	141	31	5	18	44	1.73
3041728--3041773	6	7.7	6	100	0	92	32	0	52	15	1.43
3042246--3042282	19	2.0	19	89	5	58	37	0	0	62	0.96
3048719--3048788	13	5.3	13	68	10	52	62	1	1	34	1.13
3048761--3048788	14	2.0	14	100	0	56	71	0	0	28	0.86
3048784--3048824	19	2.1	20	86	4	57	41	12	7	39	1.70
3053312--3053344	14	2.4	14	94	0	57	24	0	6	69	1.10
3055354--3055425	36	2.0	36	100	0	144	36	22	13	27	1.92
3057646--3057683	3	12.7	3	94	0	67	63	0	0	36	0.95
3059324--3059373	23	2.1	24	85	3	66	62	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3059395--3059469	23	3.4	21	75	14	53	57	1	1	40	1.16
3059676--3059717	18	2.3	18	84	15	59	54	0	0	45	0.99
3061406--3061465	25	2.4	25	81	15	70	36	0	3	60	1.14
3065277--3065318	3	13.7	3	80	14	50	30	0	4	64	1.14
3065265--3065325	25	2.5	24	79	10	70	26	3	3	67	1.22
3066051--3066078	2	14.0	2	100	0	56	50	0	0	50	1.00
3066216--3066246	16	1.9	16	100	0	62	51	16	0	32	1.44
3066220--3066254	8	4.4	8	88	0	52	51	11	0	37	1.38
3066214--3066254	12	3.4	12	86	0	55	51	12	0	36	1.40
3067155--3067191	2	18.5	2	89	10	58	51	0	2	45	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24