genome.fa.s74.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold74
Parameters: 2 7 7 80 10 50 1000
Length:  4633657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  24  of  24  ( 2862 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4494960--4495030	27	2.6	27	88	6	99	22	7	23	46	1.76
4495107--4495148	20	2.1	20	86	0	57	11	42	2	42	1.54
4495646--4495685	3	13.3	3	100	0	80	35	0	0	65	0.93
4496739--4496781	2	22.5	2	82	17	56	48	0	2	48	1.14
4497237--4497261	12	2.1	12	100	0	50	68	8	0	24	1.16
4497694--4497738	21	2.0	21	87	8	63	40	0	4	55	1.20
4497734--4497781	16	2.9	16	80	20	55	60	2	0	37	1.09
4500664--4500703	20	2.0	20	90	9	64	47	0	0	52	1.00
4501287--4501344	28	2.0	28	86	10	80	48	0	1	50	1.11
4503175--4503201	7	3.9	7	100	0	54	14	0	0	85	0.61
4503399--4503437	21	1.9	19	85	10	51	38	0	5	56	1.22
4504043--4504070	4	7.0	4	100	0	56	25	0	0	75	0.81
4504248--4504304	27	2.1	27	83	6	71	50	0	0	49	1.00
4505032--4505064	2	16.5	2	100	0	66	48	0	0	51	1.00
4513240--4513282	17	2.5	17	92	0	68	46	4	9	39	1.57
4513251--4513308	20	3.1	19	80	11	66	50	5	5	39	1.47
4515106--4515144	12	3.2	12	82	13	53	46	0	30	23	1.53
4515133--4515173	17	2.3	18	76	19	50	39	4	29	26	1.77
4521387--4521422	16	2.2	16	95	0	63	52	0	41	5	1.24
4522039--4522084	20	2.2	22	88	7	69	47	6	8	36	1.60
4523553--4523602	17	2.9	17	91	8	75	40	0	0	60	0.97
4523582--4523633	21	2.2	25	77	19	67	38	1	0	59	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4523587--4523632	21	2.1	23	88	8	69	41	2	0	56	1.11
4524075--4524110	16	2.2	16	90	9	56	52	0	0	47	1.00
4524241--4524328	28	3.2	26	82	9	95	42	1	2	54	1.20
4524297--4524395	30	3.4	28	74	13	94	44	2	1	52	1.19
4524290--4524376	34	2.5	35	81	7	95	42	2	1	54	1.20
4524323--4524407	30	2.9	29	73	13	75	42	2	1	54	1.21
4524550--4524599	25	2.0	24	85	11	66	48	14	20	18	1.82
4534470--4534522	22	2.3	24	83	6	65	39	0	0	60	0.97
4544542--4544694	76	2.0	76	94	0	270	36	3	5	53	1.44
4544541--4544659	37	3.2	37	62	13	89	33	4	5	56	1.43
4544570--4544688	37	3.2	37	67	13	98	37	2	5	53	1.39
4545541--4545576	13	2.8	13	91	0	54	52	2	2	41	1.30
4545702--4545740	19	2.0	21	85	10	55	48	0	0	51	1.00
4549333--4549370	17	2.2	17	95	0	67	5	34	28	31	1.80
4555106--4555169	32	2.0	32	96	0	119	15	23	29	31	1.95
4556995--4557065	22	3.0	22	71	22	56	39	0	1	59	1.06
4556975--4557056	31	2.7	30	78	12	87	37	0	1	60	1.04
4557056--4557126	14	5.4	14	68	19	53	49	0	0	50	1.00
4557046--4557135	47	2.0	45	82	4	108	50	0	0	50	1.00
4557005--4557117	24	4.8	24	71	16	76	44	0	0	54	1.06
4558522--4558562	2	20.5	2	94	0	73	51	0	0	48	1.00
4559827--4559855	3	9.7	3	100	0	58	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4562699--4562753	21	2.5	22	88	8	69	50	0	0	49	1.00
4562707--4562753	21	2.2	21	92	7	78	48	0	0	51	1.00
4563968--4564036	34	2.0	34	97	0	129	55	15	15	13	1.70
4565386--4565428	9	4.6	9	80	11	50	46	0	0	53	1.00
4565376--4565422	20	2.3	20	88	3	67	48	0	0	51	1.00
4565385--4565432	25	1.9	25	91	8	80	45	0	0	54	0.99
4565929--4565959	2	15.5	2	100	0	62	48	0	51	0	1.00
4566652--4566701	21	2.4	21	76	6	57	38	4	6	52	1.45
4567987--4568039	27	2.0	27	89	7	83	33	5	0	60	1.20
4569274--4569332	24	2.4	25	76	15	61	45	1	3	49	1.28
4570341--4570401	2	30.5	2	93	0	104	47	0	0	52	1.00
4570676--4570720	9	4.9	9	86	2	54	68	0	0	31	0.89
4570675--4570718	19	2.3	20	84	7	56	65	0	0	34	0.93
4571322--4571384	6	10.8	6	86	6	67	46	0	0	53	1.00
4571322--4571384	8	8.1	8	80	7	67	46	0	0	53	1.00
4571327--4571384	14	4.3	14	82	8	66	44	0	0	55	0.99
4571399--4571432	16	2.1	16	88	0	50	61	0	0	38	0.96
4571677--4571728	25	2.0	26	88	3	79	67	0	0	32	0.91
4573304--4573351	2	24.0	2	100	0	96	50	0	0	50	1.00
4579096--4579128	17	1.9	17	88	11	50	27	30	3	39	1.72
4586996--4587108	36	3.1	35	87	5	154	35	17	26	20	1.95
4589001--4589047	2	23.5	2	100	0	94	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4589218--4589255	18	2.1	18	95	0	67	23	0	0	76	0.79
4589347--4589400	24	2.3	23	81	6	65	44	0	0	55	0.99
4590303--4590331	2	14.5	2	100	0	58	48	0	0	51	1.00
4590898--4590936	20	2.0	20	85	10	53	30	0	0	69	0.89
4591439--4591466	4	7.0	4	100	0	56	75	0	0	25	0.81
4591831--4591863	16	2.1	16	88	5	50	69	3	0	27	1.03
4592270--4592329	27	2.3	27	81	13	72	45	0	1	53	1.10
4592265--4592330	5	12.8	5	75	12	62	45	0	1	53	1.09
4592265--4592348	42	2.0	43	81	6	100	51	0	1	47	1.08
4592947--4592973	3	9.0	3	100	0	54	33	0	0	66	0.92
4593274--4593309	2	18.5	2	94	5	65	50	0	0	50	1.00
4596009--4596034	11	2.4	11	100	0	52	7	0	0	92	0.39
4599190--4599233	23	2.0	22	83	12	56	45	0	0	54	0.99
4608468--4608500	2	16.5	2	100	0	66	51	0	0	48	1.00
4609543--4609584	19	2.2	19	95	0	75	33	4	0	61	1.17
4609756--4609793	16	2.4	16	95	0	67	39	0	0	60	0.97
4611561--4611596	13	2.8	13	95	0	63	63	0	0	36	0.94
4614704--4614749	22	2.1	22	84	8	58	54	2	2	41	1.25
4616724--4616805	41	2.1	39	86	9	112	51	0	4	43	1.23
4616784--4616877	41	2.3	42	78	7	102	36	0	3	60	1.13
4619539--4619569	2	15.5	2	93	0	53	45	0	3	51	1.17
4621858--4621910	22	2.5	22	77	20	58	52	13	0	33	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4621863--4621897	9	3.8	9	92	3	52	51	14	0	34	1.42
4623166--4623219	25	2.2	25	100	0	108	44	0	3	51	1.19
4627065--4627091	14	1.9	14	100	0	54	25	0	0	74	0.83
4627233--4627271	16	2.3	17	86	8	53	48	2	2	46	1.29
4627731--4627793	27	2.3	27	78	10	65	41	0	1	57	1.08
4629219--4629291	14	5.2	14	70	9	51	58	1	1	38	1.15
4629218--4629290	29	2.6	28	85	6	94	58	1	1	38	1.15
4629723--4629762	19	2.2	19	86	13	57	50	0	2	47	1.14
4629734--4629769	19	1.9	19	88	5	56	50	0	0	50	1.00
4629890--4629936	18	2.5	20	76	16	55	53	0	0	46	1.00
4629877--4629936	20	3.4	17	74	17	50	56	0	0	43	0.99
4630541--4630578	15	2.6	15	87	4	51	76	7	2	13	1.11
4633201--4633229	3	9.7	3	100	0	58	65	0	0	34	0.93
4633552--4633591	17	2.4	17	82	0	53	75	0	2	22	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24

The End!