genome.fa.s74.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold74
Parameters: 2 7 7 80 10 50 1000
Length:  4633657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  4  of  24  ( 2862 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
749530--749619	10	8.9	10	72	18	53	32	0	2	65	1.05
750701--750727	4	6.8	4	100	0	54	77	22	0	0	0.76
757853--758007	39	4.0	39	97	0	276	37	30	15	16	1.90
762905--762985	20	4.1	21	75	22	70	56	1	2	39	1.20
770033--770063	2	15.5	2	93	0	53	45	0	0	54	0.99
772768--772810	13	3.2	13	83	3	50	65	0	0	34	0.93
772793--772837	21	2.1	21	95	0	81	57	0	0	42	0.98
776681--776732	22	2.3	22	80	3	59	59	0	0	40	0.97
777613--777637	2	12.5	2	100	0	50	0	52	0	48	1.00
779420--779472	3	17.7	3	100	0	106	67	0	0	32	0.91
780346--780372	2	13.5	2	100	0	54	48	0	0	51	1.00
782024--782056	15	2.3	15	90	10	52	3	9	0	87	0.63
782283--782322	19	2.1	19	90	9	64	60	0	0	40	0.97
782306--782349	23	1.9	23	86	9	63	56	0	0	43	0.99
782345--782394	6	8.3	6	80	12	50	56	2	0	42	1.11
782348--782387	17	2.3	17	87	12	55	52	2	0	45	1.14
792929--792981	16	3.3	16	76	5	54	60	0	5	33	1.20
793522--793561	10	4.2	10	81	18	50	27	0	0	72	0.85
793517--793556	18	2.2	19	95	4	73	30	0	0	70	0.88
800186--800244	30	2.0	30	83	6	75	35	1	1	61	1.16
803825--803874	2	25.0	2	91	0	82	46	0	4	50	1.20
813875--813910	18	1.9	19	88	5	56	44	5	0	50	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
813921--813968	24	2.1	22	85	11	62	60	0	2	37	1.09
813994--814054	17	3.6	17	81	14	65	40	1	0	57	1.08
814046--814097	21	2.5	21	81	12	63	57	0	3	38	1.17
814059--814097	20	2.0	20	90	10	62	56	0	5	38	1.22
814079--814116	14	2.7	14	88	8	51	50	2	2	44	1.30
814145--814209	34	2.0	32	82	11	78	63	0	0	36	0.95
814172--814291	10	11.8	10	69	16	59	58	1	0	40	1.08
814172--814246	30	2.4	30	84	8	89	60	1	0	38	1.06
814141--814297	83	1.9	83	81	15	191	56	1	0	42	1.07
814306--814341	16	2.3	16	90	4	56	41	8	2	47	1.48
814771--814862	46	2.0	46	83	8	116	53	0	1	45	1.07
816289--816351	31	2.0	31	96	0	117	31	26	12	28	1.93
821745--821793	19	2.5	20	83	3	64	57	4	0	38	1.18
828253--828304	26	2.0	26	100	0	104	38	19	0	42	1.51
830639--830670	8	3.9	8	95	4	55	62	0	0	37	0.95
830620--830729	41	2.6	43	75	15	104	54	0	0	44	1.06
830620--830712	43	2.2	44	79	13	104	54	1	0	44	1.07
830646--830719	23	3.0	24	80	15	80	54	1	0	44	1.08
830654--830713	23	2.7	23	83	16	83	53	1	0	45	1.10
832509--832547	16	2.4	16	86	4	51	58	0	2	38	1.12
832547--832581	16	2.1	16	89	10	52	37	0	0	62	0.95
832711--832796	41	2.1	41	93	0	145	9	27	25	37	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
832721--832807	41	2.1	41	84	0	111	10	28	22	37	1.87
833289--833320	2	16.0	2	93	0	55	46	0	3	50	1.17
836478--836502	11	2.3	11	100	0	50	60	0	0	40	0.97
855491--855545	18	3.2	18	79	20	57	50	0	0	49	1.00
855508--855574	18	3.9	18	71	15	52	49	0	0	50	1.00
855508--855601	32	2.9	34	84	9	108	45	1	0	53	1.07
859734--859759	2	13.0	2	100	0	52	50	0	50	0	1.00
860984--861034	22	2.3	23	83	10	61	41	1	5	50	1.37
865305--865335	15	2.1	15	93	0	53	29	0	38	32	1.57
876161--876213	27	1.9	27	84	3	70	54	9	1	33	1.43
876941--876967	5	5.4	5	100	0	54	62	0	0	37	0.95
877531--877583	28	1.9	28	84	3	72	35	15	1	47	1.56
881863--882009	69	2.1	69	100	0	294	28	23	15	32	1.95
883976--884041	26	2.6	27	76	16	68	46	3	3	46	1.33
884350--884378	3	9.7	3	100	0	58	34	0	0	65	0.93
889982--890026	2	22.5	2	100	0	90	51	0	0	48	1.00
890840--890880	10	4.1	10	83	0	55	82	0	17	0	0.66
890912--890954	15	3.0	15	83	6	54	41	0	0	58	0.98
892122--892166	23	1.9	24	86	4	65	17	2	8	71	1.23
892393--892451	29	2.1	27	81	12	66	44	1	0	54	1.10
893069--893098	2	15.0	2	92	0	51	50	0	3	46	1.18
893359--893399	21	2.0	20	85	4	55	48	0	4	46	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
895641--895671	2	15.5	2	100	0	62	48	0	0	51	1.00
895784--895813	2	15.0	2	100	0	60	50	0	0	50	1.00
904260--904315	27	2.1	27	93	0	94	51	0	23	25	1.48
907311--907350	14	2.9	14	80	0	53	80	0	17	2	0.83
908953--908991	2	19.0	2	94	5	69	48	0	2	48	1.15
911987--912017	2	15.5	2	100	0	62	51	0	48	0	1.00
919932--919981	10	4.6	11	75	22	52	26	2	2	70	1.09
919932--919981	22	2.3	20	75	15	55	26	2	2	70	1.09
922422--922459	2	19.0	2	88	0	58	52	2	0	44	1.14
923395--923437	2	21.5	2	100	0	86	48	0	0	51	1.00
926066--926098	13	2.3	15	90	10	52	69	0	0	30	0.88
926066--926098	7	4.7	7	88	11	50	69	0	0	30	0.88
926501--926581	31	2.7	30	81	7	110	40	6	2	50	1.40
927291--927341	25	2.0	25	92	7	86	41	0	0	58	0.98
927301--927346	13	3.6	13	74	14	51	47	0	0	52	1.00
927709--927770	14	4.4	14	82	10	81	41	8	1	48	1.42
936097--936136	21	2.0	21	90	5	64	57	2	0	40	1.12
936708--936781	28	2.7	29	82	12	86	40	0	0	59	0.97
936730--936773	20	2.1	21	84	12	56	38	0	0	61	0.96
936817--936865	21	2.3	22	82	10	66	63	0	0	36	0.95
936817--936875	21	2.8	21	82	10	59	59	0	0	40	0.97
936962--937020	17	3.5	17	81	2	66	30	0	1	67	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
937002--937059	24	2.4	25	80	13	68	25	0	5	68	1.10
937281--937370	33	3.1	28	76	16	83	43	1	1	54	1.14
937358--937420	15	4.1	15	72	12	56	34	0	0	65	0.93
937349--937421	30	2.4	30	86	6	94	38	0	0	61	0.96
937390--937431	17	2.3	19	80	12	52	42	0	0	57	0.99
941478--941527	16	3.0	17	74	11	50	36	2	0	62	1.07
941994--942018	7	3.6	7	100	0	50	88	0	12	0	0.53
942680--942719	20	2.1	20	86	9	57	57	0	0	42	0.98
942689--942763	20	3.6	19	69	22	53	58	0	0	41	0.98
942683--942772	42	2.2	41	82	9	103	61	0	0	38	0.96
942715--942780	21	3.1	22	72	8	66	63	0	0	36	0.95
942691--942745	28	2.0	28	85	7	76	60	0	0	40	0.97
942695--942780	41	2.1	42	85	10	115	60	0	0	39	0.97
942772--942802	16	1.9	16	93	0	53	48	0	0	51	1.00
945109--945141	2	16.5	2	100	0	66	48	0	0	51	1.00
947568--947594	2	13.5	2	100	0	54	48	0	0	51	1.00
947710--947812	9	10.9	9	69	22	52	42	1	2	52	1.27
947696--947804	45	2.3	49	77	14	124	39	3	3	53	1.36
949696--949737	2	21.0	2	100	0	84	50	0	0	50	1.00
950304--950369	31	2.1	33	82	5	82	51	1	0	46	1.10
950406--950454	26	2.0	26	84	11	68	55	2	0	42	1.11
950464--950514	10	5.1	10	77	15	52	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
950442--950510	15	4.4	16	76	10	63	59	0	1	39	1.06
950466--950520	11	5.6	10	77	16	53	58	0	0	41	0.98
950463--950520	29	2.0	30	90	10	93	58	0	0	41	0.98
951099--951144	15	3.1	15	83	0	65	56	0	0	43	0.99
951130--951170	21	2.0	21	85	0	55	31	0	0	68	0.90
952409--952460	18	2.9	17	73	18	52	46	0	0	53	1.00
952409--952474	32	1.9	36	85	11	95	45	0	0	54	0.99
952409--952475	31	2.0	36	83	13	90	46	0	0	53	1.00
952413--952530	60	1.9	65	82	8	156	41	0	0	56	1.11
952497--952535	11	3.5	11	82	10	53	30	0	0	69	0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24