genome.fa.s74.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold74
Parameters: 2 7 7 80 10 50 1000
Length:  4633657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  5  of  24  ( 2862 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
952486--952535	22	2.3	22	82	10	66	32	2	0	66	1.03
961967--961992	13	2.0	13	100	0	52	23	7	15	53	1.67
962256--962302	2	23.5	2	100	0	94	48	0	0	51	1.00
963445--963476	2	16.0	2	100	0	64	50	0	0	50	1.00
970917--971118	50	4.0	50	96	1	352	28	22	12	36	1.90
978697--978732	2	18.0	2	100	0	72	50	0	0	50	1.00
979954--979990	2	19.0	2	88	5	58	54	0	0	45	1.00
981821--981849	14	2.0	15	93	6	51	48	3	0	48	1.18
985573--985599	12	2.2	12	100	0	54	59	0	0	40	0.98
987297--987348	22	2.4	21	81	12	61	40	0	0	59	0.97
989667--989709	2	21.5	2	95	0	77	46	2	51	0	1.13
992765--992821	20	2.8	20	81	5	71	54	1	0	43	1.10
995110--995159	2	25.0	2	100	0	100	50	0	0	50	1.00
996129--996171	14	3.0	14	75	3	50	30	0	4	65	1.13
1006957--1006983	2	13.5	2	100	0	54	48	0	0	51	1.00
1007210--1007265	25	2.2	26	81	9	62	39	1	0	58	1.08
1009617--1009647	2	15.5	2	100	0	62	48	0	0	51	1.00
1013801--1013828	2	14.0	2	100	0	56	50	0	0	50	1.00
1015983--1016040	19	3.2	19	70	22	61	63	1	3	31	1.21
1022171--1022220	20	2.5	20	93	0	82	28	8	24	40	1.83
1025215--1025246	2	16.0	2	100	0	64	50	0	0	50	1.00
1026701--1026741	19	2.1	20	86	13	59	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1026750--1026811	20	3.5	20	68	32	68	43	0	0	56	0.99
1026764--1026813	24	2.2	24	82	13	61	40	0	0	60	0.97
1026744--1026808	32	2.0	33	93	3	114	46	0	0	53	1.00
1026775--1026848	27	2.9	25	80	13	71	36	1	1	60	1.13
1034343--1034410	18	3.5	18	69	18	55	58	0	1	39	1.07
1034343--1034436	27	3.3	28	74	16	77	59	0	1	39	1.04
1034392--1034438	18	2.7	18	87	6	71	59	0	0	40	0.97
1035034--1035081	19	2.6	19	80	9	55	43	0	0	56	0.99
1040373--1040409	6	6.2	6	90	0	56	48	2	0	48	1.15
1044442--1044468	2	13.5	2	100	0	54	51	48	0	0	1.00
1045540--1045568	2	14.5	2	100	0	58	51	0	0	48	1.00
1047179--1047226	26	1.9	24	83	8	60	66	8	0	25	1.19
1047728--1047789	14	4.0	16	77	22	62	32	0	0	67	0.91
1047741--1047805	10	6.3	10	78	16	62	29	0	0	70	0.87
1047739--1047796	16	3.5	17	81	13	68	31	0	0	68	0.89
1050482--1050583	54	2.0	50	83	11	125	31	18	16	33	1.94
1050650--1050678	8	3.8	8	95	4	51	48	0	0	51	1.00
1052327--1052433	49	2.2	48	83	9	139	42	17	4	35	1.71
1056666--1056741	28	2.6	29	78	14	77	38	7	3	50	1.50
1057657--1057720	17	3.6	18	77	10	69	68	1	0	29	0.99
1057658--1057720	18	3.5	17	73	23	58	68	1	0	30	0.99
1057654--1057723	36	2.0	35	86	8	97	65	1	0	32	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1057851--1057929	5	16.2	5	70	18	51	58	0	1	40	1.06
1057900--1057933	14	2.5	13	90	4	50	47	0	5	47	1.26
1068779--1068822	22	2.0	22	82	8	54	47	0	0	52	1.00
1072062--1072100	18	2.2	18	85	0	51	48	0	0	51	1.00
1077832--1077876	21	2.0	23	83	8	58	46	2	0	51	1.13
1078332--1078425	38	2.4	39	73	18	90	35	0	1	63	1.01
1078714--1078738	3	8.3	3	100	0	50	68	0	0	32	0.90
1079055--1079084	2	15.0	2	100	0	60	50	0	0	50	1.00
1079653--1079701	14	3.4	15	77	5	57	34	2	0	63	1.06
1079738--1079775	19	2.0	20	89	5	60	44	5	5	44	1.49
1079889--1079936	25	1.9	25	87	8	71	62	0	0	37	0.95
1082185--1082209	13	1.9	13	100	0	50	68	0	0	32	0.90
1082780--1082854	17	4.2	17	78	11	62	54	0	0	45	0.99
1082810--1082852	15	2.8	14	83	16	50	53	0	0	46	1.00
1083238--1083266	15	1.9	15	100	0	58	27	0	0	72	0.85
1083321--1083355	17	2.1	17	89	10	54	48	0	0	51	1.00
1088277--1088301	12	2.1	12	100	0	50	92	0	8	0	0.40
1094890--1094914	2	12.5	2	100	0	50	52	0	0	48	1.00
1095269--1095306	19	2.0	19	85	10	51	34	0	0	65	0.93
1095275--1095377	35	2.9	34	71	17	84	41	0	0	57	1.05
1095347--1095383	14	2.5	15	91	4	58	35	0	0	64	0.94
1095399--1095451	23	2.3	22	81	9	61	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1095416--1095473	24	2.5	24	86	8	75	51	3	0	44	1.18
1096484--1096541	27	2.1	27	84	9	73	53	0	0	46	1.00
1097082--1097128	16	3.0	16	84	3	60	55	0	4	40	1.19
1097077--1097118	21	2.0	22	90	4	68	52	0	4	42	1.22
1097073--1097160	11	8.1	11	69	9	56	50	0	2	47	1.13
1097073--1097160	22	4.0	21	73	5	68	50	0	2	47	1.13
1097228--1097266	17	2.3	17	86	8	53	46	0	5	48	1.24
1098424--1098471	21	2.3	20	83	13	62	43	0	0	56	0.99
1098409--1098500	23	4.1	22	71	16	73	39	0	0	60	0.97
1098435--1098495	25	2.6	22	78	19	54	36	0	0	63	0.94
1101825--1101974	13	11.4	13	75	10	126	27	28	19	25	1.99
1101825--1101962	40	3.5	39	76	6	125	27	28	19	24	1.99
1104154--1104240	13	6.6	13	75	6	68	32	19	17	31	1.95
1104205--1104278	26	2.8	26	77	2	76	37	21	13	27	1.91
1106113--1106191	33	2.4	34	83	10	101	49	0	5	45	1.24
1106156--1106196	21	1.9	22	85	5	57	53	0	2	43	1.13
1107065--1107110	20	2.1	21	84	11	58	54	0	2	43	1.12
1107052--1107118	22	2.9	24	75	22	72	50	0	1	47	1.10
1107071--1107111	20	2.0	22	90	9	68	56	0	0	43	0.99
1107955--1107980	2	13.0	2	100	0	52	50	0	0	50	1.00
1108516--1108546	5	6.2	5	96	0	53	16	0	3	80	0.83
1108835--1108865	16	2.0	15	93	6	53	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1109307--1109332	4	6.5	4	100	0	52	76	0	0	23	0.78
1109710--1109753	21	2.1	21	83	4	54	6	22	15	54	1.65
1112125--1112163	17	2.3	16	83	12	51	43	2	0	53	1.14
1112306--1112382	17	4.5	17	69	18	52	37	2	0	59	1.11
1114810--1114846	2	18.5	2	94	0	65	51	2	0	45	1.15
1118891--1118977	38	2.3	38	96	2	158	27	16	13	42	1.86
1125309--1125445	5	28.2	5	65	24	53	43	0	0	55	1.05
1125322--1125426	22	5.1	20	69	20	74	47	0	0	52	1.00
1125321--1125422	29	3.7	28	72	21	90	47	0	0	52	1.00
1125321--1125368	16	2.7	20	72	27	61	47	0	0	52	1.00
1125365--1125421	16	3.3	18	68	22	50	47	0	0	52	1.00
1125309--1125426	18	6.9	18	69	17	65	45	0	0	53	1.06
1125409--1125461	14	3.7	14	85	10	63	33	0	1	64	1.05
1126359--1126405	3	16.0	3	88	4	69	0	27	0	72	0.85
1134334--1134364	3	10.3	3	100	0	62	35	0	0	64	0.94
1135540--1135600	18	3.5	17	79	20	72	60	0	3	36	1.13
1139820--1139846	2	13.5	2	100	0	54	51	0	0	48	1.00
1142949--1142988	2	20.0	2	100	0	80	50	0	0	50	1.00
1143913--1143995	18	4.6	18	80	0	76	18	43	1	37	1.58
1143925--1143972	15	3.2	15	81	0	60	14	47	2	35	1.56
1143913--1143995	12	6.9	12	78	0	76	18	43	1	37	1.58
1145823--1145875	23	2.2	25	86	6	83	79	11	7	1	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1146369--1146443	28	2.7	29	83	8	84	45	0	1	53	1.08
1146390--1146486	25	3.9	25	71	12	83	40	1	1	57	1.12
1146743--1146805	21	3.3	20	74	17	62	53	0	3	42	1.16
1147656--1147700	19	2.4	19	88	0	63	26	13	17	42	1.86
1151744--1152002	50	5.2	50	86	0	365	29	18	19	32	1.95
1153833--1153883	16	3.2	16	72	13	52	45	1	1	50	1.24
1154285--1154357	23	3.2	22	75	5	65	60	2	0	36	1.11
1159176--1159269	47	2.0	47	91	0	152	38	3	31	26	1.72
1162117--1162184	33	2.1	33	86	10	95	45	0	1	52	1.09
1162451--1162533	21	3.8	21	69	15	60	27	0	4	67	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24