genome.fa.s74.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold74
Parameters: 2 7 7 80 10 50 1000
Length:  4633657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  2  of  24  ( 2862 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
200166--200198	2	16.0	2	93	6	57	48	0	3	48	1.17
201821--201847	2	13.5	2	100	0	54	51	48	0	0	1.00
205064--205089	2	13.0	2	100	0	52	50	0	0	50	1.00
205089--205117	2	14.5	2	100	0	58	51	0	48	0	1.00
205236--205297	5	11.6	5	76	23	56	46	0	0	53	1.00
205244--205282	9	4.0	9	81	18	51	46	0	0	53	1.00
205307--205365	21	2.8	20	78	14	64	59	0	0	40	0.97
205325--205386	21	3.3	18	70	14	54	61	0	0	38	0.96
205317--205386	14	4.5	15	69	15	52	62	0	0	37	0.95
211048--211077	2	15.0	2	100	0	60	50	0	0	50	1.00
215640--215665	2	13.0	2	100	0	52	50	0	50	0	1.00
221959--222008	10	4.9	10	79	13	57	78	0	20	2	0.86
221958--222012	17	2.9	18	72	22	51	78	0	18	3	0.90
229888--229916	2	14.5	2	100	0	58	0	0	48	51	1.00
231312--231906	298	2.0	298	96	0	1109	22	16	22	38	1.93
234039--234074	17	2.1	17	90	10	56	83	2	5	8	0.89
235805--235853	11	4.7	11	75	14	50	55	0	0	44	0.99
238196--238223	2	14.0	2	100	0	56	50	0	0	50	1.00
238253--238282	4	7.5	4	92	0	51	26	3	23	46	1.68
247620--247661	2	21.0	2	100	0	84	0	0	50	50	1.00
248024--248059	17	2.1	17	100	0	72	33	22	19	25	1.97
248620--248671	24	2.2	24	82	6	61	44	0	1	53	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
250683--250724	2	21.0	2	100	0	84	50	0	0	50	1.00
251993--252047	2	28.5	2	78	7	60	52	1	0	45	1.11
252682--252761	39	2.1	39	97	0	151	28	6	22	42	1.78
256286--256327	2	21.0	2	100	0	84	0	50	0	50	1.00
262562--262610	19	2.7	18	81	6	53	77	0	14	8	0.98
262743--262784	6	7.3	6	94	2	52	0	16	0	83	0.65
262873--262924	14	3.6	14	80	12	52	65	0	0	34	0.93
263489--263542	2	27.0	2	84	0	72	44	1	5	48	1.37
263489--263542	16	3.4	16	86	0	81	44	1	5	48	1.37
271600--271644	24	2.0	22	83	16	56	33	0	6	60	1.23
271693--271778	30	2.9	30	87	0	136	55	0	3	40	1.17
273229--273262	2	17.0	2	100	0	68	50	0	0	50	1.00
273450--273482	2	16.5	2	100	0	66	48	0	0	51	1.00
288774--288813	15	2.5	16	88	8	55	57	0	0	42	0.98
288774--288816	16	2.6	17	85	10	63	55	0	0	44	0.99
288878--288945	31	2.2	30	75	14	68	58	2	5	32	1.37
289126--289169	21	2.2	19	84	8	52	65	0	0	34	0.93
289107--289203	35	2.7	37	73	12	94	65	2	0	31	1.04
289354--289390	15	2.5	15	86	0	56	59	0	0	40	0.97
289656--289771	57	2.0	59	84	3	155	49	7	9	33	1.64
290383--290442	23	2.7	23	75	12	61	66	0	1	31	1.01
290402--290456	28	1.9	28	82	10	67	65	0	1	32	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
290703--290741	18	2.1	19	90	4	62	51	0	0	48	1.00
290740--290806	20	3.3	20	76	12	66	59	0	0	40	0.97
297978--298005	1	28.0	1	100	0	56	100	0	0	0	0.00
299277--299306	11	2.7	11	94	0	51	50	10	0	40	1.36
302064--302108	2	22.5	2	100	0	90	48	0	0	51	1.00
306920--306962	2	21.5	2	100	0	86	51	0	0	48	1.00
308205--308237	2	16.5	2	93	0	57	48	3	0	48	1.17
319592--319624	2	16.5	2	93	0	57	48	48	3	0	1.17
323198--323266	26	2.7	25	78	10	77	46	1	0	52	1.09
323196--323271	25	3.1	23	77	17	73	44	1	0	53	1.08
323205--323299	29	3.1	29	78	18	88	43	1	0	55	1.06
323240--323287	20	2.5	18	75	15	51	41	0	0	58	0.98
323453--323479	14	1.9	14	100	0	54	62	7	0	29	1.22
323662--323705	18	2.6	17	79	10	54	38	2	0	59	1.10
324121--324208	29	3.0	29	75	14	83	54	0	2	43	1.12
324221--324250	3	10.0	3	100	0	60	66	0	0	33	0.92
324586--324620	3	11.3	3	93	6	61	65	0	0	34	0.93
326756--326804	2	24.5	2	100	0	98	0	48	0	51	1.00
332230--332326	47	2.1	47	96	0	176	55	5	5	34	1.44
335651--335681	2	15.5	2	100	0	62	48	0	51	0	1.00
340178--340235	6	9.8	6	72	23	52	37	0	0	62	0.96
340172--340235	23	2.8	22	79	9	74	37	0	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
340385--340466	28	2.9	28	83	7	94	30	6	2	60	1.33
340385--340479	30	3.3	29	80	10	88	31	7	3	57	1.42
342849--345809	740	4.0	739	96	1	5575	41	7	8	42	1.65
345839--345867	3	9.7	3	100	0	58	31	0	0	68	0.89
346877--346937	21	2.8	21	72	5	59	47	0	0	52	1.00
346889--346959	33	2.2	31	82	5	88	52	0	0	47	1.00
346898--346966	33	2.2	31	81	5	75	53	0	0	46	1.00
346937--346997	25	2.4	26	72	8	63	59	0	0	40	0.98
346925--347003	22	3.4	22	70	16	61	56	0	0	43	0.99
349149--349200	12	4.7	12	79	15	67	34	0	0	65	0.93
353889--353916	2	14.0	2	100	0	56	50	50	0	0	1.00
357967--358000	16	2.1	16	88	0	50	61	8	5	23	1.47
360276--360310	18	2.1	17	89	10	54	62	0	2	34	1.10
360366--360399	2	17.0	2	100	0	68	50	0	0	50	1.00
366593--366617	9	2.8	9	100	0	50	16	0	0	84	0.63
366587--366648	25	2.5	24	78	12	63	16	1	4	77	1.02
378182--378206	5	5.0	5	100	0	50	20	0	40	40	1.52
379213--379247	2	17.5	2	100	0	70	51	0	0	48	1.00
395948--395972	12	2.1	12	100	0	50	44	24	16	16	1.86
397052--397082	2	15.5	2	100	0	62	51	48	0	0	1.00
397752--397778	2	13.5	2	100	0	54	51	0	48	0	1.00
398651--398706	24	2.3	24	84	9	69	57	0	1	41	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
398667--398707	14	3.3	13	78	21	52	48	0	2	48	1.14
398667--398723	11	4.9	12	75	16	57	45	0	1	52	1.11
398654--398721	23	3.1	22	78	17	70	50	0	1	48	1.10
407852--407890	11	3.6	11	89	3	53	66	2	0	30	1.05
422666--422692	2	13.5	2	100	0	54	0	51	0	48	1.00
424846--424879	16	2.1	17	88	5	52	82	0	5	11	0.83
426552--426715	80	2.0	80	97	0	310	43	15	7	33	1.76
429892--429960	30	2.3	30	85	5	95	23	7	46	23	1.77
429926--430003	30	2.7	30	74	5	81	23	5	47	24	1.71
430173--430230	24	2.6	22	77	17	57	24	3	50	22	1.65
430352--430423	12	5.8	12	75	22	51	15	1	65	18	1.35
430384--430413	6	5.0	6	100	0	60	16	0	66	16	1.25
430333--430479	9	16.0	9	68	16	70	15	2	60	21	1.47
430529--430636	48	2.2	48	86	3	146	23	4	56	15	1.58
430550--430653	48	2.2	48	100	0	208	19	3	61	15	1.48
430526--430641	27	4.4	27	65	15	73	23	4	57	14	1.55
433079--433122	21	2.1	21	82	0	52	56	0	0	43	0.99
436366--436397	11	2.8	12	90	9	50	65	0	3	31	1.08
436366--436400	17	2.1	17	88	0	52	65	0	2	31	1.07
442301--442359	30	2.0	30	93	0	100	28	23	13	33	1.93
445101--445137	2	18.5	2	100	0	74	51	0	0	48	1.00
448682--448707	2	13.0	2	100	0	52	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
448707--448743	2	18.5	2	100	0	74	48	0	0	51	1.00
448943--448967	2	12.5	2	100	0	50	48	0	0	52	1.00
449686--449735	20	2.5	19	76	20	57	48	8	6	38	1.57
449925--449960	2	19.5	2	83	16	51	50	0	0	50	1.00
452438--452549	18	6.2	18	71	20	74	61	1	0	35	1.13
461209--461246	2	19.0	2	100	0	76	50	0	0	50	1.00
461331--461892	279	2.0	288	87	4	831	43	7	8	39	1.65
461721--461763	21	2.0	21	82	13	52	48	0	2	48	1.14
461776--461806	2	15.5	2	100	0	62	51	0	0	48	1.00
480839--480869	16	1.9	16	100	0	62	54	6	0	38	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24