genome.fa.s74.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold74
Parameters: 2 7 7 80 10 50 1000
Length:  4633657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  7  of  24  ( 2862 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1376368--1376506	27	5.3	27	73	14	112	28	14	18	38	1.90
1376671--1376819	61	2.5	61	77	10	148	43	18	8	30	1.78
1376718--1376848	59	2.2	59	81	14	153	42	22	7	26	1.80
1376827--1376867	14	2.7	15	85	7	57	46	26	7	19	1.76
1376735--1376864	59	2.2	58	77	15	133	43	23	6	27	1.77
1381445--1382084	322	2.0	322	95	0	1163	35	14	18	31	1.92
1386139--1386186	20	2.3	20	82	10	62	64	6	2	27	1.28
1386585--1386642	30	1.9	31	89	3	91	48	3	3	44	1.36
1386875--1386965	21	4.3	21	78	13	80	48	6	4	40	1.49
1386890--1386965	11	7.2	11	71	14	61	48	6	3	40	1.48
1387134--1387201	21	3.2	20	76	12	57	57	4	5	32	1.43
1387128--1387288	42	3.8	41	76	8	144	53	8	4	34	1.50
1387145--1387337	21	9.4	21	70	13	134	50	8	5	35	1.55
1393811--1393847	19	1.9	19	88	0	56	51	0	5	43	1.24
1394318--1394381	11	6.1	12	73	25	56	65	0	1	32	1.02
1394332--1394369	18	2.1	19	85	5	51	71	0	0	28	0.87
1398488--1398538	15	3.4	15	80	0	66	39	13	17	29	1.88
1398516--1398607	15	6.1	15	73	5	69	29	21	20	28	1.98
1398528--1398627	30	3.3	30	75	5	112	29	23	22	26	1.99
1398525--1398652	60	2.1	60	88	0	193	27	23	23	25	2.00
1398519--1398656	15	9.2	15	67	9	66	28	23	23	25	2.00
1403965--1404046	42	2.0	42	95	0	146	42	4	9	42	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1403970--1404058	42	2.1	42	85	4	117	44	5	10	39	1.62
1405063--1405089	2	13.5	2	100	0	54	51	0	0	48	1.00
1405942--1405970	2	14.5	2	100	0	58	51	0	48	0	1.00
1406578--1406727	75	2.0	76	93	1	257	44	16	10	28	1.81
1409466--1409509	21	2.1	21	86	0	61	47	2	4	45	1.35
1409697--1409744	27	1.9	24	84	16	62	47	4	0	47	1.21
1409811--1409858	15	3.1	15	78	6	51	56	0	0	43	0.99
1412283--1412382	51	2.0	51	84	4	130	40	15	19	26	1.90
1415666--1415710	18	2.6	18	86	6	58	51	0	0	48	1.00
1416736--1416778	18	2.4	16	79	20	50	37	0	0	62	0.95
1417022--1417065	23	1.9	23	86	9	63	45	2	0	52	1.13
1418678--1418716	21	1.9	20	85	15	53	28	5	2	64	1.28
1420854--1420883	2	14.5	2	93	6	51	50	3	0	46	1.18
1422736--1422767	4	8.0	4	92	0	55	71	0	28	0	0.86
1422737--1422767	16	1.9	16	100	0	62	70	0	29	0	0.87
1438884--1438908	12	2.1	12	100	0	50	44	0	0	56	0.99
1441361--1441394	2	17.0	2	100	0	68	50	0	0	50	1.00
1443730--1443811	30	2.6	32	77	11	80	53	3	0	42	1.18
1443896--1443955	30	2.0	31	86	3	86	36	11	5	46	1.62
1445969--1445995	14	1.9	14	100	0	54	33	0	0	66	0.92
1445973--1446054	30	2.7	29	80	10	94	40	1	0	58	1.06
1446296--1446347	16	3.4	16	74	12	56	53	0	1	44	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1446763--1446796	2	17.0	2	100	0	68	50	0	0	50	1.00
1446933--1446968	18	1.9	19	88	5	56	63	0	0	36	0.94
1451613--1451649	20	1.9	20	88	5	58	18	0	2	78	0.87
1453314--1453346	3	11.0	3	100	0	66	33	0	0	66	0.92
1455902--1455930	2	14.5	2	100	0	58	51	0	0	48	1.00
1457546--1457617	25	3.0	24	74	13	67	63	1	2	31	1.17
1457896--1457943	18	2.5	19	86	6	62	58	4	8	29	1.46
1457897--1457945	19	2.5	20	81	15	59	57	4	8	30	1.47
1459673--1459722	22	2.4	22	87	9	70	42	6	0	52	1.26
1459713--1459762	9	5.4	10	77	13	54	44	0	0	56	0.99
1459713--1459762	19	2.7	19	73	14	50	44	0	0	56	0.99
1459713--1459762	24	2.2	22	82	13	57	44	0	0	56	0.99
1461545--1461629	29	2.9	29	72	18	68	51	0	3	44	1.18
1461642--1461685	23	2.0	22	82	13	54	45	0	6	47	1.29
1462452--1462519	26	2.6	27	80	2	84	42	0	2	54	1.15
1462456--1462532	22	3.3	22	70	19	57	46	0	2	50	1.15
1462466--1462560	48	2.0	48	87	4	138	49	0	4	46	1.21
1462657--1462725	23	3.0	23	78	2	77	31	0	13	55	1.38
1463006--1463119	28	3.8	30	74	18	89	57	1	0	40	1.15
1463651--1463697	16	3.2	15	77	17	53	59	0	2	38	1.09
1463653--1463713	29	2.1	29	88	8	90	57	0	1	40	1.08
1463708--1463774	27	2.5	27	80	4	64	52	2	0	44	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1470367--1470436	30	2.3	29	76	19	72	11	17	42	28	1.83
1470367--1470430	33	1.9	33	83	0	83	12	15	43	28	1.83
1472034--1472059	4	6.5	4	100	0	52	50	23	0	26	1.50
1472087--1472132	2	23.0	2	100	0	92	50	50	0	0	1.00
1476519--1476574	29	2.0	29	85	3	78	51	1	1	44	1.22
1476669--1476712	22	2.0	22	81	0	52	34	11	20	34	1.88
1477332--1477410	28	2.9	26	80	14	79	45	0	0	54	0.99
1477345--1477410	27	2.5	24	85	12	60	46	0	0	53	1.00
1477366--1477410	21	2.1	22	84	12	58	51	0	0	48	1.00
1477744--1477781	17	2.1	19	85	9	53	50	2	0	47	1.15
1480741--1480801	20	3.1	20	72	11	54	47	0	1	50	1.10
1480828--1480875	24	1.9	24	83	8	60	52	0	2	45	1.12
1482132--1482192	30	2.0	30	100	0	122	44	3	13	39	1.60
1482646--1482692	23	2.1	23	84	7	62	31	6	8	53	1.57
1483654--1483701	18	2.5	20	77	19	57	52	4	0	43	1.20
1485810--1485839	2	15.0	2	92	0	51	46	0	3	50	1.18
1487147--1487245	38	2.6	38	90	0	153	27	27	14	31	1.95
1490822--1490919	38	2.6	38	86	3	126	29	21	12	36	1.90
1491368--1491397	3	10.0	3	100	0	60	66	0	0	33	0.92
1493810--1493842	2	16.5	2	100	0	66	0	48	0	51	1.00
1494938--1494990	18	2.7	22	75	24	64	50	0	0	49	1.00
1500768--1500802	17	2.1	17	88	0	52	68	11	11	8	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1502676--1502726	26	1.9	27	84	4	68	56	1	3	37	1.29
1504335--1504372	18	2.1	19	90	5	60	42	2	0	55	1.14
1506512--1506546	2	17.5	2	100	0	70	51	48	0	0	1.00
1507419--1507452	10	3.3	10	88	8	50	2	14	0	82	0.79
1507450--1507492	22	2.0	23	86	9	63	32	9	20	37	1.85
1511544--1511579	2	18.0	2	100	0	72	50	0	0	50	1.00
1517580--1517645	20	3.1	22	78	10	75	51	0	0	48	1.00
1517614--1517651	14	2.7	14	87	0	58	50	0	0	50	1.00
1517745--1517784	18	2.5	17	81	18	50	57	0	0	42	0.98
1519150--1519203	23	2.4	24	81	9	60	59	0	1	38	1.08
1519900--1519976	30	2.6	30	97	0	145	37	11	0	50	1.39
1521430--1521454	2	12.5	2	100	0	50	52	48	0	0	1.00
1521454--1521480	2	13.5	2	100	0	54	51	0	0	48	1.00
1531428--1531465	2	19.0	2	94	0	67	0	47	0	52	1.00
1533719--1533772	24	2.1	26	83	10	67	55	0	0	44	0.99
1533778--1533816	11	3.5	11	83	13	53	46	0	0	53	1.00
1535820--1535887	31	2.2	31	80	17	79	52	0	5	41	1.25
1536690--1536742	25	2.2	25	83	6	65	24	5	1	67	1.22
1540549--1540588	2	20.0	2	89	0	62	47	2	2	47	1.29
1541569--1541627	22	3.0	19	77	20	59	45	0	0	54	0.99
1541578--1541625	22	2.2	22	85	7	62	47	0	0	52	1.00
1542070--1542113	2	22.5	2	88	4	63	45	0	2	52	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1551798--1551832	15	2.3	15	90	0	52	45	0	0	54	0.99
1551798--1551871	30	2.5	28	79	12	69	40	0	0	59	0.97
1552352--1552410	27	2.1	29	93	6	104	45	5	0	49	1.24
1553666--1553716	20	2.6	20	87	3	77	56	0	5	37	1.23
1553705--1553762	28	2.1	26	81	9	62	43	0	1	55	1.10
1553785--1553829	17	2.6	18	79	10	58	46	0	0	53	1.00
1553805--1553847	18	2.2	18	84	12	50	46	2	0	51	1.13
1565098--1565166	13	5.2	13	70	13	50	42	0	0	57	0.98
1565097--1565186	42	2.2	42	82	13	107	44	0	0	55	0.99
1565159--1565203	21	2.3	19	81	11	54	53	0	0	46	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24