genome.fa.s74.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold74
Parameters: 2 7 7 80 10 50 1000
Length:  4633657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  3  of  24  ( 2862 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
481163--481218	28	2.0	27	86	10	78	48	5	3	42	1.43
481617--481656	2	20.0	2	100	0	80	50	0	0	50	1.00
482439--482487	19	2.6	19	77	9	55	61	0	0	38	0.96
482545--482580	15	2.3	16	90	4	56	55	0	0	44	0.99
485096--485135	20	2.0	20	90	0	62	50	0	2	47	1.14
486683--486714	13	2.5	13	94	0	55	0	9	3	87	0.64
504130--504172	22	1.9	23	85	4	61	48	0	0	51	1.00
510142--510193	12	4.3	12	73	9	52	50	0	0	50	1.00
510167--510217	18	2.7	20	75	12	61	58	0	0	41	0.98
510428--510554	61	2.1	62	96	1	238	41	13	9	35	1.77
510528--510558	16	2.0	16	93	6	55	25	16	6	51	1.68
510666--511200	267	2.0	267	97	0	1007	24	16	24	34	1.95
511173--511495	166	1.9	166	97	0	610	28	15	15	40	1.87
513190--513236	25	1.9	24	86	4	67	72	2	19	6	1.17
515368--515404	11	3.2	12	88	11	51	59	8	8	24	1.53
515474--515534	19	3.2	20	82	11	76	78	8	13	0	0.95
515480--515531	12	4.2	12	78	4	50	78	7	13	0	0.94
517932--517956	13	1.9	13	100	0	50	24	12	0	64	1.27
530435--530489	10	4.9	11	79	14	51	54	0	0	45	0.99
530449--530489	10	3.9	10	87	9	55	53	0	0	46	1.00
531366--531399	17	2.0	17	88	0	50	61	2	14	20	1.46
531619--531671	26	2.1	26	86	6	74	43	1	0	54	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
538395--538424	2	15.0	2	100	0	60	50	0	0	50	1.00
549352--549386	2	17.5	2	100	0	70	0	0	48	51	1.00
561064--561103	2	20.5	2	94	5	73	50	0	0	50	1.00
565825--565850	2	13.0	2	100	0	52	50	0	0	50	1.00
566417--566478	23	2.7	23	77	5	63	40	0	4	54	1.22
570611--570646	3	12.0	3	100	0	72	33	0	0	66	0.92
571431--571733	48	6.3	48	83	0	349	19	54	12	13	1.71
578316--578341	3	8.7	3	100	0	52	30	0	0	69	0.89
579318--579436	55	2.2	55	89	3	177	36	22	27	13	1.92
581345--581369	2	12.5	2	100	0	50	52	0	0	48	1.00
586444--586542	20	4.7	22	69	24	79	60	0	0	39	0.97
586395--586535	7	17.4	8	68	25	59	58	0	1	39	1.07
586452--586540	45	1.9	48	88	11	141	59	0	0	40	0.97
586388--586555	27	6.0	28	73	17	111	58	0	1	39	1.10
588019--588067	20	2.4	21	83	6	57	42	2	0	55	1.11
599029--599059	4	7.8	4	100	0	62	0	0	22	77	0.77
609410--609447	14	2.5	16	87	8	53	60	0	0	39	0.97
610723--610782	15	4.1	15	74	8	61	61	0	0	38	0.96
610725--610794	15	4.7	15	77	8	54	58	0	0	41	0.98
611957--612006	24	2.2	23	85	7	66	52	0	0	48	1.00
612417--612540	58	2.1	58	77	12	139	35	0	9	54	1.33
612481--612616	72	1.9	73	83	7	179	32	0	8	58	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
612794--612921	67	1.9	66	85	7	179	35	0	9	54	1.33
613280--613504	110	2.0	113	92	2	375	52	7	4	36	1.51
628174--628230	3	19.0	3	92	0	96	0	29	33	36	1.58
629374--629453	8	10.1	8	72	12	58	48	0	0	51	1.00
629369--629416	15	3.2	15	88	5	62	41	0	0	58	0.98
629371--629453	15	5.4	14	69	19	58	50	0	0	49	1.00
629370--629467	24	4.1	24	75	11	96	47	0	0	52	1.00
629811--629856	20	2.3	20	88	0	65	50	0	0	50	1.00
629853--629907	21	2.7	20	77	8	56	60	0	0	40	0.97
636065--636151	43	2.0	43	97	0	165	34	11	14	39	1.83
645170--645204	16	2.2	16	94	0	61	37	5	0	57	1.23
645231--645260	13	2.3	13	100	0	60	43	0	0	56	0.99
645782--645815	17	2.1	16	88	5	50	58	0	2	38	1.13
650290--650329	2	20.0	2	100	0	80	50	0	0	50	1.00
650530--650554	2	12.5	2	100	0	50	52	0	0	48	1.00
651018--651078	16	3.8	16	77	16	56	65	0	1	32	1.02
651025--651091	27	2.5	26	80	20	77	67	0	0	32	0.91
651032--651092	21	2.9	21	79	13	72	67	0	0	32	0.91
651037--651102	19	3.0	21	85	10	64	65	0	1	33	1.02
651130--651156	12	2.2	12	100	0	54	59	0	0	40	0.98
651111--651164	20	2.7	21	80	16	69	57	3	0	38	1.17
651633--651662	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
652509--652560	18	2.9	17	73	18	52	57	0	0	42	0.98
653448--653492	22	2.0	23	91	4	74	51	0	0	48	1.00
653558--653614	14	4.4	13	78	12	64	45	0	1	52	1.11
654525--654575	24	2.1	25	82	7	61	49	0	5	45	1.26
655171--655220	7	7.3	7	80	6	50	82	0	16	2	0.77
655590--655638	2	24.5	2	100	0	98	51	0	0	48	1.00
656359--656411	22	2.5	20	80	16	63	62	0	0	37	0.96
658017--658058	19	2.3	19	88	8	61	38	0	0	61	0.96
658005--658063	17	3.3	18	75	15	61	35	0	0	64	0.94
658553--658588	2	18.0	2	100	0	72	50	0	0	50	1.00
658665--658700	2	18.0	2	88	0	54	44	0	0	55	0.99
659123--659163	21	2.0	21	85	9	57	58	2	9	29	1.43
662554--662597	6	7.2	6	97	2	79	15	0	81	2	0.78
666060--666252	95	2.0	95	96	0	359	32	18	18	30	1.95
668809--668857	22	2.1	24	85	14	68	46	2	0	51	1.12
669274--669307	18	1.9	18	88	5	52	0	11	2	85	0.71
671353--671395	22	2.0	21	82	13	52	53	9	2	34	1.46
673989--674026	2	19.0	2	94	0	67	47	0	2	50	1.15
675653--675697	21	2.1	21	84	12	56	44	17	17	20	1.87
678275--678324	20	2.5	21	84	12	70	46	0	2	52	1.12
678275--678325	19	2.6	19	81	9	59	45	0	1	52	1.12
678291--678379	32	2.9	31	74	16	78	50	0	0	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
678290--678379	29	3.0	29	76	14	76	50	0	0	50	1.00
678537--678591	15	3.5	16	78	9	60	47	1	5	45	1.36
684265--684494	115	2.0	111	92	5	381	26	15	14	43	1.85
684821--684857	2	18.5	2	100	0	74	51	0	0	48	1.00
689093--689123	15	2.1	15	93	0	53	90	3	6	0	0.55
690078--690158	30	2.8	28	74	20	78	43	1	0	55	1.07
690131--690166	17	2.1	17	89	5	54	41	2	0	55	1.14
690964--690998	11	3.2	11	87	0	52	65	0	0	34	0.93
691903--691972	21	3.3	21	75	18	74	55	0	2	41	1.14
692342--692372	16	1.9	16	93	0	53	54	0	0	45	0.99
697966--698006	16	2.6	16	81	11	57	9	12	12	65	1.46
703179--703209	15	2.0	16	93	6	55	70	0	0	29	0.87
703174--703215	15	2.5	18	77	18	54	69	0	0	30	0.89
707621--707653	16	2.1	16	100	0	66	51	24	6	18	1.68
709974--710019	19	2.6	18	80	13	51	23	34	17	23	1.96
713220--713252	2	16.5	2	100	0	66	48	0	0	51	1.00
714763--714795	16	2.1	16	100	0	66	39	0	0	60	0.97
730421--730454	4	8.5	4	93	0	59	2	0	47	50	1.16
731811--731857	17	2.7	17	71	15	51	53	0	0	46	1.00
732248--732284	12	3.2	12	85	14	60	51	0	0	48	1.00
741242--741280	19	2.1	19	90	9	62	41	0	0	58	0.98
741268--741328	20	3.0	22	81	13	85	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
744227--744266	3	13.3	3	100	0	80	65	0	0	35	0.93
744462--744494	15	2.3	15	94	5	59	66	12	6	15	1.42
745231--745312	35	2.3	35	80	12	80	37	0	2	59	1.11
745508--745547	14	2.9	15	85	10	50	25	0	0	75	0.81
747049--747075	2	13.5	2	100	0	54	51	0	0	48	1.00
747676--747706	16	1.9	16	93	0	53	51	0	0	48	1.00
747771--747806	18	1.9	19	88	5	56	52	8	0	38	1.32
747943--747985	22	2.0	22	81	4	52	46	0	0	53	1.00
748438--748463	2	13.0	2	100	0	52	50	0	0	50	1.00
749530--749615	23	3.7	22	75	18	93	32	0	2	65	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24