genome.fa.s74.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold74
Parameters: 2 7 7 80 10 50 1000
Length:  4633657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  23  of  24  ( 2862 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4347735--4347766	2	16.0	2	100	0	64	50	0	0	50	1.00
4348580--4348611	2	16.0	2	93	0	55	46	0	3	50	1.17
4354647--4354686	7	5.7	7	90	0	53	35	0	0	65	0.93
4354646--4354686	21	2.0	21	90	0	64	36	0	0	63	0.95
4354728--4354792	25	2.6	25	78	9	69	53	0	0	46	1.00
4354730--4354792	26	2.5	26	84	2	74	55	0	0	44	0.99
4355021--4355054	3	11.3	3	93	0	59	32	2	0	64	1.08
4355545--4355569	2	12.5	2	100	0	50	52	0	0	48	1.00
4356015--4356049	11	3.2	11	83	0	52	48	0	0	51	1.00
4359815--4359845	2	15.5	2	93	0	53	54	0	0	45	0.99
4370124--4370148	12	2.1	12	100	0	50	24	16	8	52	1.70
4371923--4372012	31	3.0	30	78	3	108	48	2	6	42	1.41
4371926--4372017	30	3.1	30	76	7	80	51	2	6	40	1.40
4373203--4373259	29	2.0	29	89	0	87	36	0	1	61	1.07
4373207--4373256	15	3.4	15	73	15	50	34	0	2	64	1.05
4373327--4373383	25	2.3	25	78	6	62	50	0	3	45	1.18
4373357--4373397	19	2.1	20	86	4	57	46	0	0	53	1.00
4373377--4373405	13	2.1	14	93	6	51	51	0	0	48	1.00
4373380--4373467	39	2.2	39	84	10	106	38	0	1	60	1.04
4373468--4373517	15	3.5	13	77	17	55	68	0	0	32	0.90
4378126--4378176	17	2.9	19	75	16	56	56	0	0	43	0.99
4378799--4378833	12	2.8	13	82	8	54	82	0	17	0	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4381876--4381901	1	26.0	1	100	0	52	100	0	0	0	0.00
4388826--4388867	22	1.9	22	90	9	68	59	0	2	38	1.10
4389456--4389495	2	20.0	2	84	0	53	52	5	0	42	1.23
4389843--4389895	21	2.7	19	77	13	63	43	3	3	49	1.38
4390265--4390292	14	2.0	14	100	0	56	42	0	0	57	0.99
4390880--4390947	30	2.2	31	89	2	102	51	0	1	47	1.09
4391503--4391550	17	2.9	16	81	9	51	56	0	0	43	0.99
4392294--4392334	2	20.5	2	100	0	82	51	0	0	48	1.00
4392742--4392794	21	2.4	21	76	20	54	54	3	7	33	1.46
4399294--4399345	20	2.6	20	75	0	59	44	1	3	50	1.31
4400144--4400191	20	2.5	19	82	3	51	56	2	4	37	1.30
4400504--4400550	2	23.5	2	100	0	94	48	0	0	51	1.00
4401246--4401288	19	2.2	20	87	4	61	53	0	0	46	1.00
4401467--4401502	2	18.0	2	100	0	72	50	0	0	50	1.00
4403132--4403195	9	6.5	10	74	18	55	40	0	0	59	0.97
4403149--4403195	19	2.6	17	83	6	58	38	0	0	61	0.96
4403494--4403542	2	25.5	2	79	8	57	55	2	0	42	1.11
4404685--4404729	2	24.5	2	82	17	62	46	0	0	53	1.00
4406788--4406845	27	2.0	30	87	9	86	60	0	0	39	0.97
4407352--4407376	2	12.5	2	100	0	50	48	0	0	52	1.00
4412349--4412380	16	2.1	16	94	5	57	65	21	6	6	1.38
4413038--4413243	102	2.0	102	97	0	385	29	19	24	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4416698--4416727	2	15.0	2	100	0	60	50	0	0	50	1.00
4424554--4424589	14	2.6	14	91	8	56	36	0	0	63	0.94
4426520--4426573	26	2.0	26	82	13	65	40	0	3	55	1.17
4428417--4428503	32	2.7	31	75	19	88	60	0	0	39	0.97
4428447--4428518	8	9.1	8	72	22	55	65	0	0	34	0.93
4428400--4428508	37	2.7	39	76	18	118	63	0	0	36	0.95
4430096--4430190	48	1.9	50	83	8	124	60	2	2	35	1.21
4430162--4430218	29	1.9	30	85	3	80	56	0	1	42	1.10
4435892--4435916	2	12.5	2	100	0	50	52	0	48	0	1.00
4436414--4436459	23	2.0	23	86	0	65	50	0	0	50	1.00
4438077--4438105	2	14.5	2	100	0	58	48	0	0	51	1.00
4439738--4439808	30	2.4	31	88	4	101	45	0	1	53	1.09
4439738--4439793	26	2.0	28	86	10	80	42	0	1	55	1.10
4442048--4442083	2	18.0	2	100	0	72	50	0	0	50	1.00
4444079--4444129	25	2.0	25	85	7	68	45	0	0	54	0.99
4444113--4444157	23	1.9	24	86	4	65	42	0	0	57	0.98
4444113--4444184	22	3.2	23	75	23	64	44	0	0	55	0.99
4444654--4444684	15	2.0	16	93	6	55	32	0	3	64	1.09
4444737--4444783	22	2.0	25	84	12	64	55	2	0	42	1.12
4444725--4444785	22	2.8	22	73	26	58	52	1	0	45	1.10
4444766--4444857	31	2.8	32	72	16	91	50	0	2	47	1.13
4444857--4444890	16	2.1	16	89	10	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4444748--4444917	65	2.7	63	73	14	152	51	0	1	47	1.08
4445240--4445313	12	5.9	12	72	13	60	32	1	1	64	1.10
4445267--4445320	23	2.2	24	93	6	92	31	3	0	64	1.11
4445240--4445319	40	2.0	40	83	9	101	32	2	1	63	1.15
4447496--4447539	23	1.9	23	90	0	70	61	15	4	18	1.50
4448431--4448457	9	3.0	9	100	0	54	33	0	0	66	0.92
4449964--4450047	31	2.8	31	78	12	77	51	1	7	40	1.37
4449991--4450047	30	1.9	29	83	16	73	54	0	3	42	1.17
4450200--4450259	20	3.0	20	77	2	66	58	0	1	40	1.08
4451106--4451156	26	1.9	27	84	4	68	45	0	0	54	0.99
4451173--4451228	28	2.0	27	86	3	76	46	0	1	51	1.11
4451525--4451564	18	2.3	19	83	12	50	42	2	2	52	1.28
4453127--4453167	2	21.0	2	90	5	66	48	0	2	48	1.14
4453378--4453517	69	2.0	69	86	5	194	37	11	15	35	1.83
4454547--4454573	2	13.5	2	100	0	54	48	0	0	51	1.00
4456110--4456185	9	7.9	9	74	18	55	67	0	0	32	0.91
4456108--4456192	39	2.1	41	85	10	115	65	0	0	34	0.93
4456108--4456197	20	4.6	20	76	14	98	65	0	0	34	0.93
4456155--4456241	32	2.7	32	80	7	104	56	0	0	43	0.99
4456111--4456280	20	8.4	21	70	17	85	58	0	0	40	1.02
4456203--4456248	23	2.0	23	83	12	58	52	0	0	47	1.00
4456097--4456280	103	1.8	101	81	11	232	57	0	0	41	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4459021--4459061	2	20.5	2	100	0	82	51	0	0	48	1.00
4459098--4459142	22	2.0	22	95	0	81	26	17	11	44	1.82
4459195--4459253	29	2.0	29	96	0	109	54	0	11	33	1.37
4460534--4460615	33	2.5	33	74	9	78	45	1	3	50	1.27
4460800--4460862	25	2.6	25	77	7	67	41	0	6	52	1.27
4463773--4463821	19	2.6	18	81	12	53	51	2	0	46	1.12
4463793--4463862	33	2.1	33	82	10	81	44	1	0	54	1.09
4464810--4464851	21	2.0	21	85	0	57	59	0	14	26	1.35
4467132--4467164	12	2.8	12	95	0	57	27	15	33	24	1.95
4471634--4471698	22	3.0	22	80	11	80	61	0	0	38	0.96
4473548--4473583	2	18.0	2	100	0	72	50	0	0	50	1.00
4482255--4482290	3	12.0	3	87	0	54	63	2	2	30	1.22
4485398--4485440	3	14.3	3	100	0	86	32	0	0	67	0.91
4486047--4486080	11	2.9	11	91	8	50	61	8	0	29	1.26
4486075--4486121	24	2.0	24	83	8	60	63	8	4	23	1.40
4486191--4486239	18	2.6	18	81	12	55	59	0	0	40	0.98
4486183--4486247	17	3.9	17	76	11	55	60	0	0	40	0.97
4487601--4487655	17	3.3	16	80	12	58	38	0	1	60	1.08
4487573--4487653	17	4.9	17	68	23	57	40	0	1	58	1.06
4488056--4488137	11	8.0	11	75	17	54	73	1	0	25	0.91
4488053--4488119	13	5.3	13	74	13	52	77	0	0	22	0.77
4488065--4488114	9	5.6	9	81	9	57	82	0	0	18	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4488065--4488110	8	5.2	8	82	17	56	82	0	0	17	0.67
4488078--4488109	10	3.4	10	83	16	50	90	0	0	9	0.45
4488053--4488109	18	2.9	18	85	15	69	80	0	0	19	0.71
4488352--4488382	14	2.1	15	94	5	55	41	0	0	58	0.98
4488342--4488404	31	2.0	30	82	17	76	38	0	1	60	1.07
4488358--4488405	11	4.4	12	73	21	52	39	0	0	60	0.97
4489270--4489296	3	9.0	3	100	0	54	33	0	0	66	0.92
4490385--4490478	27	3.5	27	82	5	102	28	6	18	46	1.73
4490550--4490590	20	2.0	20	85	4	55	12	31	4	51	1.60
4493031--4493076	21	2.1	22	88	4	67	32	19	28	19	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24