genome.fa.s74.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold74
Parameters: 2 7 7 80 10 50 1000
Length:  4633657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  9  of  24  ( 2862 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1797948--1797973	3	8.7	3	100	0	52	69	0	0	30	0.89
1799281--1799352	34	2.1	33	82	5	81	65	0	1	33	1.02
1801059--1801101	17	2.7	15	80	13	50	46	0	4	48	1.22
1801587--1801625	11	3.4	11	86	13	60	38	0	0	61	0.96
1802035--1802072	18	2.2	18	90	4	60	55	0	0	44	0.99
1802562--1802588	2	13.5	2	100	0	54	48	0	0	51	1.00
1802958--1802992	3	11.7	3	100	0	70	31	0	0	68	0.90
1809475--1809540	24	2.7	25	81	6	82	48	0	1	50	1.10
1811159--1811183	7	3.6	7	100	0	50	48	0	0	52	1.00
1811636--1811669	17	2.1	16	89	10	52	44	11	2	41	1.56
1812026--1812113	45	1.9	46	88	2	133	57	2	4	35	1.31
1814796--1814831	7	5.1	7	89	0	54	16	0	36	47	1.47
1815913--1815938	1	26.0	1	100	0	52	100	0	0	0	0.00
1822544--1822578	2	17.5	2	93	0	61	48	2	0	48	1.16
1823578--1823628	2	25.5	2	100	0	102	49	0	0	50	1.00
1828266--1828318	20	2.7	19	83	13	63	50	1	0	47	1.12
1828720--1828766	18	2.6	17	81	12	58	63	0	0	36	0.94
1829379--1829409	15	2.1	14	94	5	53	54	0	0	45	0.99
1829374--1829411	15	2.4	16	82	13	51	55	0	0	44	0.99
1829396--1829446	19	2.7	20	70	11	54	62	0	0	37	0.95
1829805--1829866	11	5.0	12	78	16	56	43	0	1	54	1.09
1830054--1830166	20	6.1	20	69	19	66	36	0	2	61	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1830118--1830173	19	3.1	19	85	10	73	33	0	1	64	1.04
1830118--1830153	8	4.2	8	89	10	54	36	0	0	63	0.94
1833392--1833427	16	2.2	16	90	9	56	66	0	0	33	0.92
1833931--1833966	18	1.9	19	88	5	56	52	2	0	44	1.15
1835151--1835234	23	3.8	23	72	22	65	55	1	0	42	1.07
1836243--1836289	11	4.4	11	81	13	53	57	0	0	42	0.98
1836254--1836333	32	2.6	32	81	16	105	52	0	1	46	1.08
1836248--1836344	51	1.9	52	82	14	123	55	0	1	43	1.06
1836248--1836342	19	5.5	18	66	26	55	54	0	1	44	1.07
1836250--1836347	36	2.9	34	76	17	105	56	0	1	42	1.06
1836445--1836503	23	2.7	21	75	15	57	62	0	0	37	0.95
1839110--1839152	21	2.0	21	81	0	50	53	0	2	44	1.13
1840167--1840200	15	2.3	15	89	0	50	32	0	0	67	0.91
1842080--1842129	22	2.3	22	86	3	66	42	0	2	56	1.11
1842089--1842142	18	2.8	18	76	17	54	42	0	1	55	1.10
1842089--1842136	14	3.6	14	78	18	57	41	0	0	58	0.98
1845644--1845668	2	12.5	2	100	0	50	48	0	0	52	1.00
1851974--1852039	15	3.7	18	80	11	59	53	3	0	43	1.16
1852037--1852073	20	2.0	20	89	10	60	51	2	0	45	1.15
1852086--1852123	14	2.8	14	81	18	53	57	2	0	39	1.12
1852258--1852307	16	3.1	16	88	0	64	62	8	2	28	1.35
1852271--1852332	32	2.0	31	81	9	72	62	12	1	22	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1852359--1852395	16	2.3	17	86	13	60	59	0	0	40	0.97
1855723--1855775	2	26.5	2	92	0	88	45	0	50	3	1.19
1863432--1863462	5	6.2	5	92	0	53	58	0	0	41	0.98
1863480--1863523	22	1.9	24	81	9	56	45	2	0	52	1.13
1863551--1863585	17	2.0	17	88	5	52	71	0	0	28	0.86
1866265--1866300	2	18.5	2	88	5	56	44	0	2	52	1.15
1866326--1866374	19	2.7	18	78	6	53	55	0	2	42	1.11
1866326--1866374	18	2.7	18	81	6	55	55	0	2	42	1.11
1870074--1870194	60	2.0	60	96	0	224	43	13	14	28	1.83
1878986--1879071	15	6.1	15	72	15	76	55	0	0	44	0.99
1878996--1879046	26	1.9	25	84	11	66	54	0	0	45	0.99
1878996--1879052	23	2.3	25	85	8	73	56	0	0	43	0.99
1879069--1879201	11	11.1	12	70	22	75	63	7	0	27	1.26
1879045--1879084	21	1.9	21	85	10	55	62	0	0	37	0.95
1879069--1879129	23	2.7	24	87	12	85	65	4	0	29	1.13
1879091--1879163	23	3.2	23	80	16	73	64	5	0	30	1.16
1879074--1879155	34	2.4	34	93	2	137	67	4	0	28	1.11
1879390--1879428	21	1.9	20	89	5	60	58	2	0	38	1.12
1879446--1879513	8	9.0	7	82	17	75	1	19	0	79	0.81
1879457--1879513	4	15.0	4	82	14	68	1	19	0	78	0.83
1879445--1879512	31	2.2	32	92	5	113	1	17	0	80	0.78
1880967--1880991	13	1.9	13	100	0	50	0	12	0	88	0.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1881221--1881263	2	22.5	2	81	9	54	48	2	0	48	1.14
1881491--1881541	24	2.2	23	82	10	59	27	3	5	62	1.36
1881502--1881552	24	2.1	25	88	3	77	23	1	7	66	1.28
1888050--1888088	18	2.2	18	85	0	51	66	5	2	25	1.25
1888530--1888579	25	1.9	27	88	8	77	52	8	2	38	1.43
1889558--1889596	2	19.5	2	100	0	78	48	0	0	51	1.00
1897764--1897796	15	2.1	16	88	11	50	54	6	0	39	1.25
1898277--1898317	20	2.1	20	90	4	66	56	2	0	41	1.13
1898636--1898679	12	3.7	12	81	9	54	36	0	15	47	1.46
1903412--1903503	6	14.8	6	70	22	57	58	1	0	40	1.05
1903374--1903453	24	3.5	23	75	17	78	56	1	1	41	1.15
1903412--1903503	19	4.8	20	75	17	81	58	1	0	40	1.05
1903406--1903499	35	2.7	35	81	14	106	57	1	0	41	1.06
1903682--1903722	15	2.5	17	76	7	50	46	0	0	53	1.00
1905929--1905967	2	19.5	2	100	0	78	48	0	0	51	1.00
1910423--1910450	2	14.0	2	100	0	56	50	0	0	50	1.00
1915009--1915041	10	3.7	9	84	15	50	63	0	0	36	0.95
1915010--1915063	25	2.1	24	80	13	54	55	0	0	44	0.99
1916154--1916264	8	14.4	8	65	26	53	36	0	0	62	1.02
1916149--1916270	13	9.2	13	70	21	76	36	0	0	61	1.08
1916150--1916242	43	2.1	45	90	4	145	37	0	1	61	1.03
1916143--1916265	54	2.3	54	81	12	139	36	0	0	62	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1916194--1916265	31	2.3	30	81	13	92	34	0	1	63	1.03
1916150--1916265	44	2.7	44	85	6	130	37	0	0	62	1.02
1916145--1916265	23	5.6	23	71	15	71	36	0	0	62	1.01
1917568--1917605	11	3.3	12	82	10	53	34	0	0	65	0.93
1927634--1927663	2	15.0	2	100	0	60	50	0	50	0	1.00
1929958--1929995	13	2.8	13	96	4	67	47	2	0	50	1.15
1930239--1930341	50	2.0	53	85	9	142	39	5	9	44	1.61
1930773--1930811	20	1.9	20	84	5	51	46	0	2	51	1.14
1931285--1931372	26	3.2	26	71	20	72	51	3	1	44	1.25
1931301--1931403	32	3.5	32	72	18	98	52	5	0	40	1.32
1935414--1935459	17	2.6	18	80	10	51	45	0	4	50	1.21
1935572--1935626	29	2.0	27	85	7	74	65	0	1	32	1.03
1935586--1935653	28	2.3	29	82	5	75	63	1	1	33	1.13
1936409--1936449	14	2.9	14	82	13	57	19	0	4	75	0.98
1936409--1936465	28	2.1	29	81	15	68	24	0	3	71	1.01
1944628--1944665	3	12.7	3	100	0	76	0	31	0	68	0.90
1945201--1945247	25	2.0	24	87	8	69	36	0	2	61	1.08
1947775--1947815	20	2.0	20	90	0	64	41	2	7	48	1.44
1948061--1948093	14	2.2	16	89	10	52	36	0	3	60	1.12
1948808--1948871	2	32.5	2	79	14	71	50	0	3	46	1.17
1950999--1951041	20	2.1	21	86	4	61	48	0	0	51	1.00
1951052--1951122	18	4.1	18	73	18	62	57	4	0	38	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1951559--1951613	20	2.6	21	78	18	69	56	0	0	43	0.99
1951587--1951621	17	2.2	17	90	10	56	48	0	0	51	1.00
1951759--1951786	2	14.0	2	100	0	56	50	0	0	50	1.00
1952013--1952080	28	2.5	26	79	11	75	47	0	1	51	1.09
1952006--1952079	35	2.1	34	82	7	87	48	0	1	50	1.09
1954132--1954169	19	2.1	18	85	14	51	57	2	0	39	1.12
1954160--1954308	67	2.3	67	83	11	177	49	0	2	48	1.12
1954188--1954311	9	12.8	11	67	23	66	49	0	0	50	1.06
1954188--1954319	67	2.0	67	86	8	189	49	0	1	49	1.10
1954228--1954291	20	3.2	20	86	4	94	46	0	1	51	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24