genome.fa.s2.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397255.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_44.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14367614

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   

This is table  11  of  31  ( 3649 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5703201--5703354	49	3.1	49	89	0	236	31	11	15	42	1.82
5703089--5703399	163	1.9	163	96	0	577	29	11	16	42	1.84
5703555--5703700	49	3.0	49	90	0	229	30	11	13	44	1.79
5705305--5705337	12	2.8	12	90	0	57	66	0	3	30	1.06
5709554--5709607	14	3.7	14	76	23	58	70	1	27	0	0.98
5725618--5725672	25	2.2	25	87	6	76	74	0	7	18	1.04
5731814--5731940	24	5.3	24	78	10	143	14	29	18	37	1.91
5731814--5731948	72	1.9	72	84	9	186	14	30	18	36	1.91
5736902--5737246	166	2.1	163	88	4	498	28	6	25	38	1.81
5741679--5741712	2	17.5	2	90	6	52	0	0	47	52	1.00
5747211--5747263	26	2.0	26	89	7	81	47	0	0	52	1.00
5747225--5747294	20	3.5	20	76	16	81	45	1	0	52	1.09
5747205--5747292	7	12.9	7	70	20	53	46	2	0	51	1.13
5747288--5747328	21	2.0	20	85	4	55	26	0	2	70	0.99
5747150--5747448	157	1.9	155	79	6	334	39	2	2	55	1.27
5747525--5747623	41	2.5	40	79	12	123	39	6	2	52	1.38
5747814--5747867	21	2.5	21	78	6	54	42	0	1	55	1.10
5758900--5758926	14	1.9	14	100	0	54	44	0	3	51	1.19
5758914--5759081	88	1.9	88	83	2	221	38	9	8	43	1.69
5759160--5759192	17	1.9	17	100	0	66	27	0	18	54	1.44
5769526--5769708	99	1.8	99	87	4	271	35	15	18	30	1.92
5771338--5771377	21	1.9	21	85	10	55	2	52	0	45	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5771336--5771389	5	10.8	5	77	15	58	1	57	0	40	1.09
5773044--5773096	23	2.3	23	80	3	61	60	1	1	35	1.19
5773044--5773095	24	2.1	24	82	3	59	61	1	1	34	1.18
5791632--5791686	29	2.0	27	82	10	67	58	1	5	34	1.32
5791756--5791790	10	3.5	10	84	0	52	2	11	0	85	0.69
5791756--5791798	21	2.2	20	91	8	70	2	13	0	83	0.74
5793361--5793426	30	2.2	30	100	0	132	39	13	28	18	1.89
5796689--5796722	1	34.0	1	100	0	68	0	100	0	0	0.00
5797085--5797204	63	1.9	63	96	0	222	44	5	5	45	1.49
5801361--5801440	41	2.0	41	92	0	133	53	13	10	22	1.69
5814198--5814249	27	1.9	27	100	0	104	67	15	3	13	1.37
5815822--5815861	15	2.7	15	80	0	53	10	10	0	80	0.92
5821906--5821958	27	1.9	28	88	3	81	35	18	5	39	1.75
5825383--5825461	27	2.9	26	80	14	81	45	0	3	50	1.19
5836027--5836074	21	2.3	21	81	0	51	4	14	8	72	1.23
5838213--5838520	43	7.2	43	70	8	155	29	17	16	36	1.92
5838165--5838534	172	2.2	172	87	0	535	30	16	16	36	1.91
5838268--5838534	86	3.1	83	69	11	207	28	17	17	36	1.92
5840128--5840176	24	2.0	24	96	0	89	44	8	18	28	1.78
5840526--5840613	37	2.4	35	80	10	97	42	1	4	52	1.29
5860314--5860371	24	2.4	24	97	0	107	27	22	31	18	1.97
5861132--5861261	65	2.0	62	94	4	224	43	7	12	36	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5868316--5868346	12	2.6	12	89	0	53	0	41	9	48	1.36
5876409--5876453	23	2.0	23	86	4	65	51	4	4	40	1.42
5890792--5890833	2	21.5	2	95	4	77	47	0	0	52	1.00
5890785--5890833	23	2.1	23	96	0	89	48	0	0	51	1.00
5891571--5891617	19	2.5	19	83	10	60	46	4	0	48	1.21
5896078--5896109	2	16.0	2	100	0	64	50	0	0	50	1.00
5896109--5896137	2	14.5	2	100	0	58	51	0	48	0	1.00
5897329--5897622	64	4.6	64	77	7	294	22	39	18	19	1.93
5897594--5897691	42	2.3	42	81	6	110	26	38	16	18	1.91
5898113--5898178	18	3.7	18	100	0	132	46	0	0	53	1.00
5901535--5901566	3	10.7	3	93	0	55	65	0	3	31	1.08
5902618--5902644	2	13.5	2	100	0	54	48	0	0	51	1.00
5910382--5910413	2	16.0	2	100	0	64	50	0	0	50	1.00
5911169--5911202	17	1.9	17	88	5	50	41	5	0	52	1.25
5921865--5921915	25	2.0	25	100	0	102	11	11	17	58	1.62
5929116--5929149	13	2.5	14	85	9	52	17	0	8	73	1.08
5930553--5930577	2	12.5	2	100	0	50	52	0	0	48	1.00
5931115--5931147	2	16.5	2	100	0	66	51	0	0	48	1.00
5934607--5934632	3	8.7	3	100	0	52	34	0	34	30	1.58
5953666--5953691	2	13.0	2	100	0	52	50	0	0	50	1.00
5958526--5958553	4	7.0	4	100	0	56	50	25	0	25	1.50
5958953--5959048	42	2.3	42	98	0	183	42	19	16	20	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5959912--5959953	2	21.0	2	100	0	84	50	0	0	50	1.00
5967091--5967131	20	2.0	20	100	0	82	36	4	19	39	1.73
5977922--5977980	30	2.0	30	86	0	82	22	42	27	8	1.82
5986424--5986449	4	6.5	4	100	0	52	50	23	0	26	1.50
6030161--6030245	10	7.9	11	75	16	56	41	2	0	56	1.12
6030189--6030239	21	2.3	23	80	16	63	43	0	0	56	0.99
6030199--6030457	10	27.0	10	65	23	64	39	2	0	57	1.14
6030200--6030247	12	4.3	11	89	5	62	41	0	0	58	0.98
6030200--6030240	21	2.0	21	90	9	66	41	0	0	58	0.98
6030204--6030255	24	2.3	22	80	6	59	46	1	0	51	1.12
6030269--6030319	21	2.4	22	77	9	61	29	3	0	66	1.09
6030317--6030354	18	2.2	17	90	4	58	44	2	0	52	1.14
6030306--6030371	29	2.3	29	84	7	82	42	1	0	56	1.08
6030365--6030471	50	2.1	50	80	11	112	39	1	0	57	1.16
6030400--6030472	17	4.4	17	76	19	73	38	1	0	60	1.06
6030488--6030542	16	3.5	15	79	16	51	32	1	0	65	1.03
6030488--6030578	23	4.0	24	71	19	70	29	3	0	67	1.07
6030312--6030539	52	4.5	49	72	17	173	39	2	0	57	1.16
6030502--6030583	31	2.6	30	81	11	85	29	2	0	68	1.03
6030529--6030584	19	3.0	20	71	10	55	25	3	0	71	1.02
6030555--6030670	55	2.2	53	80	16	136	28	1	1	68	1.10
6036258--6036337	39	2.1	39	97	0	151	41	17	17	23	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6042844--6042908	34	1.9	33	90	3	103	9	56	20	13	1.64
6043663--6043718	28	2.0	27	86	10	78	48	1	1	48	1.22
6043842--6043974	70	1.9	70	93	3	232	33	19	3	43	1.66
6056865--6056980	58	2.0	58	93	0	196	46	3	5	44	1.42
6057150--6057209	32	1.9	32	86	3	86	63	0	0	36	0.95
6057204--6057249	21	2.1	22	88	4	67	43	0	4	52	1.21
6057203--6057252	22	2.3	23	82	10	68	46	0	4	50	1.20
6066946--6066987	20	2.1	20	100	0	84	9	35	28	26	1.88
6070686--6071078	197	2.0	196	91	1	644	35	8	23	32	1.85
6072626--6072670	18	2.5	18	81	0	54	33	13	44	8	1.75
6073284--6073448	54	3.1	54	79	5	181	31	11	30	26	1.91
6078599--6078630	2	16.0	2	100	0	64	50	0	50	0	1.00
6079658--6079693	2	18.0	2	94	0	63	47	0	2	50	1.15
6091356--6091449	36	2.6	34	79	12	98	26	44	8	20	1.80
6091590--6091637	17	2.8	18	79	17	50	31	50	6	12	1.65
6092855--6092886	3	10.7	3	100	0	64	34	31	0	34	1.58
6094200--6094240	2	20.5	2	100	0	82	51	0	0	48	1.00
6100132--6100184	26	1.9	28	88	11	83	45	7	7	39	1.61
6100147--6100200	25	2.1	26	86	3	74	40	9	9	40	1.69
6104961--6104998	18	2.1	18	90	0	58	44	0	13	42	1.43
6112678--6112736	22	2.8	21	80	12	68	55	1	0	42	1.09
6112679--6112736	24	2.5	24	81	8	68	56	1	0	41	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6112811--6112900	37	2.4	36	82	10	94	45	22	15	16	1.85
6119178--6119222	14	3.3	13	80	20	56	2	20	17	60	1.47
6119180--6119221	21	2.0	21	86	9	59	2	21	19	57	1.52
6119546--6119617	27	2.7	26	75	16	67	41	0	0	58	0.98
6124621--6124645	13	1.9	13	100	0	50	72	0	4	24	1.02
6128468--6128536	29	2.4	30	78	11	81	39	1	4	55	1.29
6134305--6134353	18	2.7	18	100	0	98	20	4	24	51	1.65
6144035--6144091	27	2.1	28	83	3	71	45	12	7	35	1.69
6145668--6145714	22	2.1	23	84	11	62	27	6	17	48	1.71
6148483--6148521	11	3.5	11	85	0	51	43	0	0	56	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31