genome.fa.s2.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397255.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_44.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14367614

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   

This is table  26  of  31  ( 3649 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12388866--12388950	42	2.0	42	90	0	134	30	8	14	47	1.73
12389664--12389799	74	1.9	73	81	3	166	41	16	19	21	1.90
12391076--12391123	19	2.5	19	96	0	87	14	14	27	43	1.84
12391823--12392138	111	2.9	114	85	7	386	50	2	6	40	1.43
12392799--12392845	16	2.9	17	78	15	55	23	2	12	61	1.42
12394798--12394874	40	1.9	40	91	0	127	35	9	19	36	1.84
12400916--12400960	14	3.3	14	84	3	56	53	15	0	31	1.43
12406962--12407028	15	4.6	15	75	18	54	31	0	0	68	0.90
12406969--12407141	15	10.6	16	67	20	72	31	4	0	64	1.17
12406962--12407029	24	3.0	22	79	10	82	32	0	0	67	0.91
12406877--12407108	114	2.0	114	98	0	446	32	4	0	61	1.23
12407060--12407145	33	2.6	33	83	5	93	29	3	0	67	1.07
12407060--12407255	87	2.2	87	78	12	213	29	3	0	67	1.06
12407180--12407255	33	2.4	34	85	14	108	27	1	0	71	0.95
12407121--12407249	54	2.4	53	85	8	154	28	2	0	68	1.01
12407192--12407251	15	3.8	15	76	23	61	26	1	0	71	0.95
12407855--12407921	32	2.1	32	94	2	118	20	22	2	53	1.59
12408191--12408309	44	2.7	44	80	6	143	32	16	12	37	1.87
12422977--12423002	3	8.7	3	100	0	52	34	34	30	0	1.58
12423154--12423210	6	9.5	6	90	0	69	43	36	19	0	1.51
12436668--12436740	35	2.1	35	84	2	94	30	0	12	57	1.35
12436929--12436966	19	2.0	19	94	0	67	21	28	0	50	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12437038--12437117	40	2.0	40	100	0	160	27	15	7	50	1.70
12438514--12438684	91	1.9	90	96	1	315	45	12	11	30	1.77
12442884--12442921	19	2.0	20	89	5	60	52	0	0	47	1.00
12463166--12463190	13	1.9	13	100	0	50	76	0	0	24	0.80
12466555--12466627	21	3.3	22	69	16	60	38	9	17	34	1.83
12467123--12467159	20	1.9	20	88	5	58	54	5	0	40	1.24
12467899--12467942	20	2.2	20	92	4	72	47	4	15	31	1.66
12491538--12491693	23	7.0	22	73	12	122	39	0	34	25	1.61
12491525--12491693	45	3.8	45	76	5	146	42	0	33	24	1.59
12491538--12491712	89	2.0	89	79	4	192	42	0	32	24	1.59
12495649--12495693	21	2.1	21	83	0	54	44	17	15	22	1.86
12496844--12496891	22	2.2	21	82	17	62	35	14	18	31	1.91
12498562--12498603	21	2.0	21	90	4	68	30	0	7	61	1.22
12516689--12516726	2	19.5	2	83	5	51	0	47	0	52	1.00
12534111--12534161	21	2.3	24	83	12	65	68	0	9	21	1.18
12537082--12537108	6	4.5	6	100	0	54	70	14	0	14	1.17
12558256--12558345	33	2.7	34	91	3	146	38	8	21	31	1.84
12566246--12566285	21	1.9	21	100	0	80	12	0	40	47	1.41
12569207--12569327	61	2.0	60	85	1	161	40	17	9	32	1.82
12569351--12569405	18	2.9	19	78	5	58	50	14	5	29	1.65
12569838--12569907	36	1.9	36	85	8	97	34	11	20	34	1.88
12575501--12575555	15	3.7	15	82	0	65	36	7	23	32	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12575777--12575859	34	2.5	33	86	4	103	28	2	0	68	1.02
12575883--12575916	7	5.1	7	86	13	54	38	0	0	61	0.96
12575883--12575916	12	2.6	13	90	9	52	38	0	0	61	0.96
12575929--12575960	15	2.1	15	94	0	55	31	0	0	68	0.90
12575886--12575965	33	2.4	31	78	13	88	33	1	1	63	1.10
12577048--12577080	6	5.5	6	92	0	57	69	0	30	0	0.88
12585175--12585588	209	2.0	208	95	0	747	35	6	12	45	1.68
12585242--12585583	106	3.3	106	66	14	292	35	6	12	44	1.69
12603282--12603349	19	3.6	18	70	18	57	58	0	1	39	1.07
12603272--12603364	38	2.5	37	89	5	141	53	1	1	44	1.14
12603467--12603500	3	11.3	3	87	0	50	58	0	5	35	1.22
12603643--12603684	22	2.0	22	86	9	61	64	0	4	30	1.14
12605643--12606043	133	3.0	132	84	2	507	44	14	15	24	1.85
12616829--12616974	25	5.8	25	75	3	139	38	8	15	37	1.78
12616834--12616995	51	3.2	51	86	0	216	38	8	16	36	1.78
12617248--12617374	24	5.4	24	75	9	109	35	20	19	24	1.96
12617211--12617416	69	3.0	69	85	4	265	33	19	19	27	1.96
12617369--12617442	21	3.5	20	77	12	76	31	20	16	32	1.94
12617341--12617446	43	2.4	44	80	6	124	35	20	16	27	1.94
12619043--12619085	20	2.2	20	83	8	52	41	2	9	46	1.48
12622824--12622880	28	2.0	28	86	6	78	47	1	3	47	1.29
12628543--12628593	21	2.4	21	90	0	75	35	19	11	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12634793--12634908	30	3.9	31	79	13	102	43	9	9	37	1.70
12634793--12634931	28	4.9	27	78	10	107	41	10	10	37	1.74
12634797--12634954	30	5.4	29	72	8	99	41	8	8	40	1.67
12634832--12634953	58	2.1	57	82	7	140	42	9	7	40	1.66
12636423--12636447	2	12.5	2	100	0	50	48	0	0	52	1.00
12636956--12637130	36	4.9	36	83	1	192	46	10	6	36	1.65
12637016--12637112	18	5.4	18	65	15	58	47	9	5	38	1.58
12636956--12637130	71	2.5	71	85	1	226	46	10	6	36	1.65
12638029--12638078	24	2.1	24	82	14	59	40	18	8	34	1.79
12639024--12639063	2	20.0	2	84	0	53	47	5	2	45	1.38
12640875--12640908	17	1.9	18	88	5	52	41	0	2	55	1.15
12646988--12647143	29	5.3	29	75	7	120	42	6	8	42	1.62
12646988--12647161	28	5.9	29	75	12	142	43	6	9	40	1.63
12647003--12647143	59	2.4	58	81	4	167	43	6	9	41	1.62
12647301--12647333	17	1.9	17	88	11	50	39	3	15	42	1.62
12666766--12666791	2	13.0	2	100	0	52	50	0	0	50	1.00
12668822--12668851	2	15.0	2	100	0	60	50	0	0	50	1.00
12672331--12672373	6	7.2	6	86	0	50	18	2	46	32	1.62
12676448--12676487	21	1.9	21	89	0	62	40	5	12	42	1.64
12678585--12678618	13	2.6	13	90	0	50	52	5	0	41	1.25
12678604--12678754	35	4.3	35	82	2	167	43	13	7	36	1.72
12686450--12686604	36	4.4	36	83	4	192	47	9	6	36	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12686509--12686605	18	5.4	18	65	15	58	47	9	5	38	1.58
12687232--12687263	12	2.5	13	95	5	57	9	18	21	50	1.75
12688512--12688552	2	21.0	2	85	5	57	48	4	0	46	1.23
12690740--12690773	4	8.5	4	93	0	59	50	23	0	26	1.50
12706526--12706566	13	2.9	14	82	17	50	48	12	2	36	1.54
12707123--12707148	2	13.0	2	100	0	52	0	0	50	50	1.00
12707456--12707495	15	2.7	16	77	18	50	0	27	0	72	0.85
12709953--12710044	12	7.5	13	84	10	124	0	39	16	44	1.48
12709955--12710044	36	2.5	38	92	5	143	0	38	16	44	1.48
12710687--12710730	21	2.0	22	86	4	63	61	9	0	29	1.27
12712942--12712968	9	3.0	9	100	0	54	22	33	22	22	1.97
12713278--12713307	14	2.1	14	100	0	60	36	6	0	56	1.26
12713948--12713997	22	2.1	23	78	14	57	38	22	14	26	1.91
12721472--12721568	31	3.1	31	89	1	140	22	23	21	31	1.98
12734391--12734427	12	3.2	12	88	7	51	45	0	2	51	1.15
12741828--12741852	3	8.3	3	100	0	50	36	0	0	64	0.94
12752996--12753051	26	2.2	26	83	0	67	35	3	1	58	1.26
12756900--12756940	16	2.4	17	80	19	50	39	0	19	41	1.52
12762946--12762981	17	2.0	19	89	10	58	25	30	11	33	1.90
12764515--12764586	31	2.3	31	80	4	83	54	1	1	43	1.17
12768183--12768242	29	2.1	29	100	0	120	26	10	6	56	1.57
12781705--12781846	25	5.6	25	78	5	133	41	11	12	34	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12781705--12781831	51	2.5	51	90	0	191	42	11	12	33	1.79
12781926--12781969	18	2.4	18	84	0	61	40	11	20	27	1.86
12795338--12795394	27	2.2	26	90	6	89	56	0	0	43	0.99
12795314--12795575	118	2.2	122	81	8	306	56	4	1	38	1.26
12795456--12795517	27	2.3	27	86	8	81	53	3	0	43	1.17
12795353--12795584	122	1.9	118	81	9	263	56	4	1	37	1.27
12795862--12795920	27	2.1	28	87	3	84	50	6	0	42	1.28
12795852--12795914	27	2.6	22	73	21	63	46	6	0	47	1.28
12795875--12795932	27	2.1	27	81	6	64	56	1	0	41	1.09
12795971--12796006	15	2.4	15	100	0	72	52	0	0	47	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31