genome.fa.s2.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397255.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_44.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14367614

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   

This is table  8  of  31  ( 3649 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4155691--4155720	16	1.9	16	93	6	53	43	3	0	53	1.17
4155687--4155728	15	2.7	16	79	17	52	47	4	0	47	1.23
4155852--4155885	17	2.0	17	88	0	50	50	2	0	47	1.16
4156024--4156247	22	10.3	22	67	21	93	58	2	1	37	1.23
4156043--4156101	24	2.4	23	88	8	82	59	0	1	38	1.08
4156137--4156191	20	2.8	18	75	20	56	52	1	3	41	1.29
4156196--4156253	29	2.0	28	90	3	89	65	1	0	32	1.03
4156347--4156405	27	2.1	28	81	3	66	54	3	0	42	1.17
4155896--4156663	158	5.0	156	82	8	838	54	3	2	39	1.29
4156528--4156582	16	3.4	16	80	12	60	65	0	0	34	0.93
4156602--4156667	20	3.2	20	70	16	62	54	0	3	42	1.15
4156689--4156735	24	2.0	24	82	0	58	19	0	6	74	1.03
4165266--4165316	18	2.8	18	75	0	57	23	54	5	15	1.63
4165266--4165334	36	1.9	36	82	5	86	26	56	5	11	1.57
4174532--4174576	23	2.0	23	86	0	63	33	13	20	33	1.91
4174707--4174768	22	2.8	22	85	0	79	51	11	4	32	1.59
4180371--4180396	8	3.2	8	100	0	52	11	0	0	88	0.52
4183052--4183107	28	2.0	28	86	6	78	39	8	10	41	1.71
4185990--4186051	28	2.2	29	79	2	72	51	3	11	33	1.54
4186544--4186650	22	4.9	22	75	0	79	29	10	13	46	1.76
4186552--4186635	44	1.9	44	82	0	105	28	10	13	47	1.76
4186639--4186692	23	2.3	23	84	6	65	27	11	24	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4189722--4189751	15	2.0	15	93	0	51	0	16	0	83	0.65
4191072--4191112	16	2.6	16	75	25	50	34	0	4	60	1.18
4191065--4191145	35	2.3	35	76	21	80	35	0	6	58	1.23
4191099--4191135	19	1.9	19	88	0	56	32	0	8	59	1.27
4191203--4191257	19	2.9	19	94	0	92	34	7	7	50	1.58
4191514--4191550	19	2.0	20	89	10	60	32	32	0	35	1.58
4196694--4197236	283	1.9	283	84	5	731	35	8	13	42	1.75
4206831--4206867	2	18.5	2	100	0	74	48	0	0	51	1.00
4207197--4207231	2	17.5	2	87	0	52	51	0	2	45	1.16
4208592--4208641	16	3.2	16	78	16	59	56	2	0	42	1.11
4211557--4211590	16	2.1	16	88	0	50	35	17	5	41	1.74
4230151--4230181	2	15.5	2	100	0	62	48	0	0	51	1.00
4230192--4230218	2	13.5	2	100	0	54	51	0	0	48	1.00
4230218--4230271	2	27.0	2	88	0	81	50	5	44	0	1.25
4234616--4234663	25	2.0	23	84	8	60	64	2	0	33	1.05
4234621--4234680	30	2.0	30	86	3	84	65	1	1	31	1.13
4263797--4263833	2	18.5	2	100	0	74	51	0	0	48	1.00
4266404--4266432	14	2.1	14	100	0	58	62	6	0	31	1.22
4285322--4285361	20	2.0	20	85	0	53	45	0	10	45	1.37
4289448--4289487	20	2.0	21	85	5	55	60	7	7	25	1.50
4291023--4291050	1	28.0	1	100	0	56	0	100	0	0	0.00
4298344--4298381	18	2.1	18	95	0	67	71	0	0	28	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4298532--4298558	13	2.1	13	100	0	54	37	0	0	62	0.95
4303506--4303567	23	2.7	23	79	2	70	41	6	3	48	1.45
4303553--4303596	18	2.4	18	88	0	70	59	0	0	40	0.98
4306861--4306886	7	3.7	7	100	0	52	15	23	15	46	1.83
4310474--4310504	2	15.5	2	100	0	62	48	0	0	51	1.00
4316743--4316789	22	2.1	23	84	4	60	31	4	6	57	1.43
4320219--4320243	4	6.2	4	100	0	50	76	0	24	0	0.80
4326089--4326133	2	22.5	2	90	0	72	44	0	4	51	1.21
4326076--4326127	22	2.4	22	96	0	95	40	0	9	50	1.35
4327040--4327494	230	2.0	229	95	0	820	38	14	21	26	1.91
4342366--4342399	6	5.7	6	85	0	50	64	17	2	14	1.40
4349934--4350047	33	3.5	33	83	4	140	35	14	29	21	1.92
4353035--4353154	60	2.0	60	100	0	240	36	20	18	25	1.94
4359713--4359915	66	3.1	63	67	21	155	43	6	3	46	1.46
4359662--4359922	132	2.0	132	84	3	341	44	6	4	44	1.48
4359847--4359879	17	2.0	17	88	5	50	45	6	3	45	1.43
4361904--4361982	21	3.8	20	72	16	63	44	1	1	53	1.16
4361892--4361965	26	2.9	25	75	11	69	41	1	1	55	1.17
4371024--4371068	22	2.0	22	86	8	63	75	0	15	8	1.03
4379092--4379148	19	2.8	18	74	20	51	42	5	1	50	1.35
4379088--4379550	216	2.1	217	84	7	588	41	6	4	47	1.51
4385857--4385916	25	2.2	28	85	8	81	63	13	10	13	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4400190--4400215	6	4.3	6	100	0	52	34	0	50	15	1.45
4407842--4407867	2	13.0	2	100	0	52	50	0	0	50	1.00
4408249--4408292	19	2.4	18	80	3	52	40	0	0	59	0.98
4408435--4408472	17	2.2	17	100	0	76	28	5	13	52	1.61
4408533--4408605	27	2.6	27	80	4	74	63	1	1	34	1.12
4415982--4416037	20	2.6	23	77	11	64	57	1	0	41	1.09
4420459--4420552	47	2.0	47	100	0	188	25	17	27	29	1.97
4420581--4420647	35	1.9	35	96	0	125	4	29	35	29	1.77
4427166--4427199	17	2.0	17	88	11	52	52	0	0	47	1.00
4430838--4430885	2	24.0	2	100	0	96	50	0	0	50	1.00
4431829--4431856	2	14.0	2	100	0	56	50	0	0	50	1.00
4441952--4441976	2	12.5	2	100	0	50	52	48	0	0	1.00
4449044--4449082	2	20.0	2	84	5	53	51	0	2	46	1.14
4469142--4469173	10	3.2	10	95	0	55	50	15	12	21	1.77
4473033--4473059	2	13.5	2	100	0	54	0	0	48	51	1.00
4474671--4474742	31	2.4	31	81	9	87	43	5	2	48	1.40
4478405--4478472	33	2.1	33	82	0	82	36	8	13	41	1.75
4478599--4478675	29	2.6	29	73	20	70	40	7	19	32	1.80
4478717--4478778	13	5.3	11	75	16	54	77	1	3	17	0.98
4504383--4504416	18	1.9	18	88	5	52	26	2	0	70	1.01
4504376--4504424	19	2.7	20	78	18	61	30	2	0	67	1.02
4505134--4505171	18	2.1	18	85	9	51	36	0	5	57	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4524433--4524463	2	15.5	2	93	0	53	48	3	0	48	1.17
4559446--4559484	21	1.9	21	89	5	62	28	12	10	48	1.74
4566965--4566992	8	3.5	8	100	0	56	89	0	10	0	0.49
4575246--4575278	6	5.5	6	96	0	57	45	0	36	18	1.49
4585422--4585451	15	2.0	15	93	0	51	50	6	16	26	1.70
4600509--4600545	2	19.0	2	94	5	67	48	0	51	0	1.00
4602519--4602604	26	3.4	26	71	12	79	37	6	15	40	1.74
4607089--4607119	13	2.4	13	94	0	53	25	0	0	74	0.82
4611277--4611429	50	3.2	49	79	16	153	26	3	3	67	1.21
4611316--4611406	26	3.5	25	75	14	87	28	3	2	65	1.20
4611366--4611440	33	2.3	32	84	9	98	29	2	1	66	1.13
4611366--4611449	14	5.5	15	68	16	57	30	2	1	65	1.13
4612240--4612268	2	14.5	2	100	0	58	51	0	48	0	1.00
4625670--4625698	3	9.7	3	100	0	58	34	0	65	0	0.93
4635745--4635795	18	2.8	18	84	3	57	49	9	11	29	1.72
4635762--4635826	31	2.1	30	83	8	78	55	6	10	27	1.58
4646620--4646686	19	3.5	19	80	10	66	65	1	4	28	1.21
4647184--4647249	15	4.1	15	72	12	51	30	9	1	59	1.38
4647193--4647261	33	2.1	32	91	2	111	30	8	1	59	1.36
4647255--4647387	50	2.7	49	77	17	125	30	3	1	65	1.16
4647275--4647387	50	2.3	49	83	6	131	29	3	0	66	1.14
4647323--4647398	33	2.3	33	84	11	93	32	1	1	64	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4656157--4656185	2	14.5	2	100	0	58	51	0	48	0	1.00
4657386--4657439	24	2.2	24	83	0	72	1	35	3	59	1.26
4657405--4657465	25	2.5	26	84	7	74	3	34	3	59	1.30
4657785--4657837	20	2.7	20	81	0	61	41	9	11	37	1.73
4657967--4657995	13	2.1	14	93	6	51	27	0	6	65	1.18
4660973--4661026	27	2.0	28	82	10	67	40	5	11	42	1.64
4663685--4663712	6	4.7	6	100	0	56	85	0	14	0	0.59
4667366--4667403	2	19.0	2	100	0	76	50	0	50	0	1.00
4669823--4669852	12	2.5	12	88	0	51	30	0	70	0	0.88
4684299--4684693	56	6.7	59	71	19	283	34	2	0	62	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31