genome.fa.s2.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397255.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_44.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14367614

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   

This is table  13  of  31  ( 3649 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6605419--6605592	87	2.0	87	94	0	303	37	14	15	31	1.88
6616303--6616398	38	2.4	38	84	8	111	57	10	13	18	1.64
6628385--6628423	21	1.9	20	85	15	53	48	0	0	51	1.00
6643372--6643406	17	2.1	17	100	0	70	22	31	11	34	1.90
6650433--6650478	19	2.3	20	85	10	60	45	0	4	50	1.21
6656270--6656309	2	20.0	2	89	0	62	50	5	0	45	1.23
6660894--6660921	2	14.0	2	100	0	56	50	0	0	50	1.00
6663502--6663633	66	2.0	66	90	0	210	37	15	10	36	1.82
6666541--6666576	18	1.9	19	88	5	56	25	13	22	38	1.91
6667337--6667370	2	17.0	2	100	0	68	50	0	0	50	1.00
6684369--6684412	21	2.1	21	83	8	54	45	18	13	22	1.84
6695731--6695778	15	3.2	15	93	0	78	31	0	18	50	1.48
6698790--6699272	244	2.0	242	86	3	675	32	10	21	35	1.88
6707226--6708406	609	2.0	599	93	1	1918	32	20	18	28	1.96
6710290--6710331	2	21.5	2	95	4	77	50	0	0	50	1.00
6712133--6712168	14	2.5	15	90	4	56	27	11	13	47	1.77
6712160--6712214	28	2.0	28	82	10	69	32	7	16	43	1.75
6712239--6712331	27	3.4	27	77	0	87	34	9	16	39	1.81
6712312--6712368	25	2.3	25	90	0	87	42	10	12	35	1.77
6712312--6712379	25	2.7	25	84	4	75	42	10	13	33	1.78
6718501--6718640	72	1.9	72	100	0	280	17	17	19	46	1.84
6718598--6718722	29	4.4	30	80	12	149	16	20	21	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6718596--6718722	57	2.2	56	87	5	184	16	19	22	41	1.90
6720506--6720588	28	3.0	28	89	0	94	31	8	25	34	1.86
6725295--6725330	2	18.0	2	88	0	54	44	0	2	52	1.15
6733748--6733788	21	2.0	21	85	9	57	56	4	0	39	1.21
6735531--6735590	31	1.9	31	83	6	77	51	18	3	26	1.61
6736759--6736818	20	2.9	21	82	5	86	56	13	1	28	1.47
6739723--6739768	24	2.1	23	84	15	62	58	0	0	41	0.98
6739713--6739761	22	2.2	22	82	13	57	59	0	0	40	0.98
6747779--6747871	30	3.1	30	84	3	116	48	4	8	38	1.54
6748607--6748659	26	2.0	26	85	7	72	69	0	0	30	0.88
6748607--6748659	12	4.1	14	73	22	53	69	0	0	30	0.88
6748672--6748716	21	2.1	22	88	12	67	53	0	6	40	1.27
6752056--6752125	33	2.1	33	91	0	113	34	2	25	37	1.71
6752351--6752485	66	2.0	66	97	0	252	44	11	9	34	1.74
6755199--6755278	37	2.1	38	88	2	117	41	6	10	42	1.63
6755574--6755662	33	2.8	32	80	12	103	35	15	2	46	1.59
6758904--6758947	5	9.0	5	92	7	65	56	2	40	0	1.11
6758903--6758950	2	26.5	2	76	19	52	54	2	43	0	1.12
6769320--6769347	3	9.3	3	100	0	56	32	0	0	67	0.91
6770966--6771024	24	2.5	23	81	13	66	35	5	5	54	1.45
6788906--6788946	20	2.0	20	95	0	73	17	4	29	48	1.67
6798998--6799134	35	3.8	35	81	12	179	56	13	13	16	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6799039--6799161	38	3.3	38	77	15	148	56	12	13	17	1.66
6799004--6799165	73	2.2	73	96	0	297	57	11	13	17	1.65
6805731--6805755	2	12.5	2	100	0	50	48	0	0	52	1.00
6823600--6823688	44	2.0	44	97	0	169	46	12	17	23	1.82
6844229--6844274	21	2.2	21	100	0	92	41	21	19	17	1.90
6849020--6849048	14	2.0	15	93	6	51	51	0	0	48	1.00
6854942--6854988	2	23.5	2	100	0	94	48	0	0	51	1.00
6857020--6857060	18	2.3	18	100	0	82	39	0	0	60	0.96
6869380--6869406	6	4.5	6	100	0	54	29	55	14	0	1.40
6880129--6880166	2	20.0	2	84	10	53	52	0	0	47	1.00
6882224--6882312	34	2.6	33	82	5	106	31	13	26	28	1.94
6882662--6882761	1	100.0	1	87	0	146	1	0	94	5	0.37
6882662--6882761	44	2.3	44	92	0	164	1	0	94	5	0.37
6890119--6890162	15	2.9	15	86	6	54	43	2	0	54	1.12
6900245--6900283	20	2.0	20	85	10	53	46	2	5	46	1.38
6903334--6903527	66	2.9	66	85	3	230	32	25	11	29	1.92
6918836--6918896	27	2.2	28	82	2	79	18	18	6	57	1.61
6923951--6924023	35	2.1	35	89	0	110	41	9	4	45	1.56
6924574--6924666	30	3.2	29	80	7	91	35	5	1	58	1.28
6943243--6943288	15	3.1	14	84	6	56	21	4	32	41	1.73
6943236--6943288	15	3.6	14	82	7	54	22	3	30	43	1.71
6945372--6945548	93	1.9	93	88	4	268	17	25	33	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6946044--6946088	15	3.0	15	83	0	63	28	28	11	31	1.91
6947976--6948004	12	2.5	12	94	5	51	6	6	0	86	0.72
6960686--6960725	16	2.6	16	88	7	57	70	0	0	30	0.88
6963028--6963078	16	3.2	16	100	0	102	25	13	11	49	1.76
6964549--6964617	33	2.1	33	100	0	138	24	8	39	27	1.85
6968877--6969054	95	1.9	94	90	1	275	33	19	18	29	1.95
6975468--6975498	2	15.5	2	100	0	62	48	0	0	51	1.00
6975573--6975607	2	17.5	2	100	0	70	48	0	0	51	1.00
6975996--6976053	23	2.6	23	91	5	93	37	22	6	32	1.81
6976034--6976092	30	1.9	31	89	3	93	42	20	1	35	1.62
6976753--6976783	2	15.5	2	100	0	62	51	0	48	0	1.00
6980049--6980240	95	2.0	95	97	0	366	23	13	20	42	1.87
6990964--6991090	64	2.0	64	89	3	193	37	28	19	14	1.91
6994257--6994299	12	3.6	12	84	12	61	0	30	0	69	0.88
7017102--7017184	37	2.2	37	81	8	105	77	4	15	2	1.05
7020531--7020577	24	1.9	25	86	4	69	36	0	4	59	1.17
7023671--7023695	2	12.5	2	100	0	50	52	48	0	0	1.00
7026492--7026607	57	2.0	57	96	0	214	32	18	27	21	1.96
7032227--7032406	93	2.0	91	87	4	263	34	22	20	23	1.97
7033587--7033633	3	15.7	3	95	0	85	68	2	0	29	1.02
7034699--7034758	27	2.4	24	76	15	59	3	21	0	75	0.95
7036629--7036767	58	2.4	56	84	6	199	58	12	28	1	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7037239--7037288	15	3.3	15	88	0	82	38	36	2	24	1.67
7039855--7039896	21	1.9	21	85	9	57	42	0	0	57	0.99
7040120--7040164	16	2.9	15	78	21	56	66	0	0	33	0.92
7040134--7040162	14	2.1	14	93	6	51	68	0	0	31	0.89
7043346--7043379	3	11.3	3	100	0	68	32	0	0	67	0.91
7068851--7068876	7	3.7	7	100	0	52	23	0	0	76	0.78
7068851--7068902	14	3.8	13	76	19	52	19	0	5	75	1.01
7082777--7082823	23	2.0	24	83	4	60	29	4	0	65	1.11
7082793--7082838	22	2.3	19	85	14	58	26	4	0	69	1.07
7084026--7084057	9	3.7	9	95	4	57	43	0	56	0	0.99
7087638--7087674	2	18.5	2	100	0	74	48	0	0	51	1.00
7093060--7093127	28	2.5	28	92	2	111	38	16	0	45	1.47
7093162--7093211	23	2.1	25	85	10	70	36	12	8	44	1.71
7094015--7094458	225	2.0	226	90	0	701	26	18	20	34	1.95
7094623--7094664	15	2.7	15	88	7	57	0	19	2	78	0.86
7094636--7094673	20	1.9	20	89	10	60	2	21	0	76	0.91
7095488--7095521	5	6.8	5	100	0	68	79	0	20	0	0.73
7098420--7098605	98	1.9	99	93	1	320	32	30	6	30	1.83
7103931--7103966	18	2.0	18	88	0	54	33	8	0	58	1.28
7111521--7111551	7	4.4	7	100	0	62	0	12	0	87	0.55
7111732--7111775	19	2.3	20	80	11	56	27	11	2	59	1.44
7121470--7121519	23	2.2	23	100	0	100	32	26	18	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7123354--7124400	523	2.0	523	91	1	1690	39	13	15	31	1.87
7125847--7125888	22	1.9	22	90	0	66	14	16	0	69	1.20
7131706--7131745	21	1.9	21	84	0	53	25	5	5	65	1.34
7132154--7132186	14	2.5	14	90	9	52	48	0	0	51	1.00
7132282--7132326	22	2.0	21	84	16	56	57	2	2	37	1.23
7132724--7133653	252	3.7	248	75	9	695	36	13	5	44	1.67
7132724--7134296	253	6.2	251	73	10	1042	36	13	5	43	1.68
7132910--7134165	511	2.5	506	79	8	1206	35	13	5	44	1.68
7134585--7134627	22	2.0	20	82	8	50	30	2	11	55	1.48
7134302--7135670	252	5.5	251	80	4	1258	45	5	12	36	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31