genome.fa.s2.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397255.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_44.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14367614

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   

This is table  28  of  31  ( 3649 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13070691--13070854	31	5.3	31	85	1	195	32	17	16	32	1.93
13071565--13071617	23	2.3	23	90	6	81	20	26	18	33	1.96
13071588--13071691	47	2.2	47	82	0	127	26	29	14	28	1.95
13071697--13071791	23	4.2	23	67	12	63	24	32	10	32	1.89
13071742--13072038	165	1.8	165	81	1	380	24	32	11	31	1.90
13071925--13071980	23	2.4	23	72	0	58	23	30	12	33	1.92
13072740--13072778	17	2.4	17	86	4	53	7	28	0	64	1.21
13073274--13073397	43	2.8	43	74	4	113	42	12	12	31	1.81
13073762--13073802	18	2.2	19	86	4	57	41	2	24	31	1.68
13077791--13077915	62	2.0	62	98	0	241	49	9	12	28	1.71
13078596--13078936	171	2.0	173	91	2	553	28	22	6	42	1.78
13085604--13085634	16	1.9	16	100	0	62	0	16	0	83	0.64
13085554--13085662	47	2.3	44	75	18	105	1	12	9	76	1.10
13088149--13088180	5	6.6	5	96	3	57	0	15	0	84	0.63
13089698--13089737	2	20.0	2	85	10	55	50	2	2	45	1.28
13103973--13104005	15	2.1	16	94	5	59	24	12	12	51	1.73
13108257--13108301	21	2.1	21	87	0	63	62	13	2	22	1.42
13109841--13109881	20	2.0	21	85	4	57	31	17	24	26	1.97
13110663--13110703	2	20.5	2	92	0	55	4	0	41	53	1.22
13113211--13113252	20	2.1	20	100	0	84	42	14	14	28	1.84
13113314--13113348	2	17.5	2	100	0	70	48	0	0	51	1.00
13118088--13118192	52	2.0	52	100	0	210	27	9	15	47	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13124779--13124813	3	11.7	3	93	0	61	28	0	2	68	1.04
13125880--13125913	18	1.9	17	94	5	59	52	0	0	47	1.00
13125880--13125913	17	2.0	17	88	0	50	52	0	0	47	1.00
13126020--13126087	36	1.9	35	85	11	95	36	1	1	60	1.15
13126015--13126071	27	2.1	28	83	9	73	36	1	1	59	1.18
13128213--13128251	15	2.6	15	79	0	51	23	2	0	74	0.94
13130164--13130216	27	2.0	27	85	7	72	20	1	13	64	1.38
13132788--13132832	15	2.9	15	90	3	63	26	22	2	48	1.62
13132789--13132844	30	1.9	29	82	13	71	26	23	1	48	1.61
13133085--13133250	77	2.1	78	86	1	235	42	12	5	39	1.66
13133750--13133831	25	3.1	25	81	15	69	52	9	10	26	1.68
13133787--13133835	25	2.0	25	95	0	89	55	8	6	30	1.54
13133997--13134043	23	2.0	23	91	0	76	61	10	8	19	1.53
13136876--13136947	28	2.6	28	82	4	74	26	15	15	43	1.86
13138081--13138118	16	2.3	17	86	13	53	36	7	5	50	1.54
13141192--13141260	32	2.2	32	97	0	129	46	7	5	40	1.55
13141213--13141278	18	3.6	18	80	8	69	50	3	6	40	1.43
13144166--13144226	21	2.9	20	73	9	59	21	8	21	49	1.75
13144310--13144386	21	3.6	21	85	3	100	27	6	16	49	1.70
13144317--13144383	22	3.1	22	89	2	100	23	5	16	53	1.65
13144261--13144492	118	2.0	118	82	5	281	31	7	17	43	1.77
13144432--13144500	21	3.3	21	80	8	68	31	2	17	47	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13144406--13144504	21	4.8	20	70	13	65	37	4	16	42	1.67
13146096--13146146	18	2.8	19	75	19	54	76	1	0	21	0.88
13149902--13149936	3	11.7	3	100	0	70	65	0	0	34	0.93
13152365--13152494	66	2.0	66	84	3	172	26	10	18	45	1.81
13169043--13169133	36	2.5	36	80	1	101	34	12	20	32	1.90
13174679--13174721	20	2.2	20	91	0	68	32	11	11	44	1.77
13177157--13177197	2	21.0	2	95	5	75	48	0	0	51	1.00
13179951--13180006	1	56.0	1	96	0	103	0	0	98	1	0.13
13182670--13182904	31	7.6	31	71	6	163	32	22	11	33	1.90
13182665--13182935	31	8.7	32	70	9	136	32	22	11	33	1.90
13182932--13183000	32	2.1	33	89	2	104	36	34	7	21	1.81
13185984--13186041	20	2.9	20	84	0	62	36	18	17	27	1.94
13193483--13193522	16	2.5	15	80	11	53	52	10	0	37	1.35
13196305--13196337	17	1.9	17	88	11	50	69	6	6	18	1.30
13198229--13198277	21	2.4	21	82	3	64	65	4	4	26	1.29
13214785--13214917	63	2.1	63	81	2	149	21	16	16	45	1.85
13216325--13216384	29	2.1	29	100	0	120	40	0	16	43	1.48
13221509--13221538	8	3.8	8	90	0	51	50	6	0	43	1.28
13221509--13221544	16	2.2	16	95	0	63	47	8	0	44	1.33
13224151--13224315	30	5.6	30	76	12	130	35	10	9	44	1.71
13224198--13224340	29	4.8	30	81	7	141	33	11	9	45	1.73
13224266--13224379	28	4.1	27	79	10	106	32	14	10	42	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13231683--13231734	25	2.1	25	85	0	68	26	36	17	19	1.94
13233782--13233890	35	3.2	34	71	10	107	36	22	10	31	1.87
13233801--13233906	35	3.1	35	72	8	119	39	20	11	28	1.87
13234322--13234513	73	2.6	73	83	5	228	21	16	18	43	1.88
13239511--13239624	57	2.0	57	91	0	183	42	14	6	37	1.70
13240414--13240611	54	3.7	55	76	16	225	36	17	13	32	1.88
13240414--13240645	108	2.2	108	96	2	423	39	16	12	31	1.86
13242598--13242746	75	2.0	75	85	0	199	13	10	48	27	1.74
13242778--13242832	12	4.6	12	79	0	65	12	3	58	25	1.51
13242796--13242848	18	2.9	18	80	0	61	9	3	56	30	1.49
13246141--13246194	28	1.9	28	92	0	90	35	22	9	33	1.86
13247182--13247384	39	5.2	39	81	4	196	43	8	12	35	1.73
13247149--13247384	39	6.1	38	78	6	179	44	9	11	34	1.74
13247149--13247384	78	3.0	75	76	10	217	44	9	11	34	1.74
13247585--13247635	21	2.4	21	90	0	75	29	13	13	43	1.83
13250599--13250833	64	3.7	62	80	11	242	34	26	11	27	1.91
13250523--13250833	128	2.4	128	80	7	353	34	27	11	26	1.91
13250533--13250833	32	9.4	32	72	5	214	34	27	10	26	1.90
13255767--13255863	50	2.0	49	84	8	126	19	21	16	42	1.89
13262316--13262432	36	3.3	35	84	3	164	35	3	12	48	1.58
13262309--13262451	70	2.0	70	87	2	207	35	3	12	48	1.58
13264032--13264093	29	2.1	30	87	3	90	40	14	16	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13265725--13265785	27	2.2	28	85	8	81	39	11	14	34	1.82
13265844--13265927	27	3.0	28	72	13	82	36	10	13	39	1.79
13265826--13265914	27	3.2	27	69	20	67	44	10	10	34	1.72
13265807--13265943	56	2.4	56	78	3	150	42	13	9	35	1.76
13272276--13272353	27	2.9	28	75	7	81	35	15	12	35	1.86
13279506--13279550	23	2.0	23	90	0	72	8	40	2	48	1.47
13281172--13281225	21	2.6	21	82	5	56	42	9	27	20	1.82
13281172--13281225	11	5.1	11	76	13	51	42	9	27	20	1.82
13282414--13282467	22	2.5	22	96	3	101	22	0	11	66	1.22
13282638--13282864	121	1.9	121	96	0	418	37	17	16	29	1.92
13284046--13284194	32	4.7	32	68	12	83	26	14	26	32	1.95
13285821--13285864	22	2.0	22	86	0	61	47	18	13	20	1.82
13285822--13285870	22	2.2	22	81	3	53	51	18	14	16	1.77
13286419--13286487	36	1.9	36	85	2	95	28	13	24	33	1.93
13287789--13287836	20	2.5	21	83	16	68	45	0	10	43	1.38
13288791--13288951	73	2.2	74	80	3	182	40	13	19	26	1.89
13296748--13296781	15	2.2	15	89	5	50	47	5	0	47	1.26
13297536--13297639	30	3.5	30	74	8	97	53	5	7	32	1.53
13298512--13298557	21	2.2	21	92	0	74	26	19	15	39	1.91
13300722--13300843	28	4.2	28	73	9	111	45	7	6	40	1.58
13309401--13309458	14	4.5	13	76	10	57	72	0	1	25	0.94
13309390--13309463	33	2.3	31	84	11	87	68	0	1	29	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13309390--13309451	19	3.2	19	79	6	63	67	0	1	30	1.00
13309405--13309524	52	2.1	57	79	14	126	67	1	2	28	1.13
13309505--13310007	15	34.1	15	65	26	122	64	1	2	32	1.15
13309505--13309652	17	9.1	17	63	21	57	65	1	2	31	1.12
13309542--13310012	9	52.7	9	63	27	61	63	1	1	32	1.14
13309501--13309584	32	2.6	32	83	5	98	69	0	2	28	1.01
13309503--13310195	113	6.3	109	88	9	806	63	1	2	32	1.15
13309619--13309675	12	4.5	13	71	22	50	68	0	0	31	0.90
13309603--13310195	113	5.4	113	91	6	834	63	1	2	33	1.15
13309612--13310036	24	17.8	24	64	23	82	63	1	2	32	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31