genome.fa.s2.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397255.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_44.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14367614

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   

This is table  18  of  31  ( 3649 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8897025--8897061	19	1.9	19	94	0	65	51	2	5	40	1.39
8897206--8897263	21	2.8	21	81	0	71	39	1	3	55	1.27
8899996--8900053	21	2.8	21	79	10	57	74	8	1	15	1.14
8900091--8900131	19	2.1	20	86	4	57	75	19	4	0	0.98
8900702--8900803	30	3.5	30	74	11	86	36	0	4	57	1.27
8903633--8903700	33	2.1	33	83	10	86	45	2	0	51	1.16
8925698--8925740	21	2.1	20	83	12	52	65	0	16	18	1.28
8933217--8933249	2	17.0	2	87	6	50	48	0	3	48	1.17
8934321--8934415	43	2.2	43	86	3	129	30	21	0	48	1.50
8936030--8936105	37	2.1	37	85	2	100	23	7	15	52	1.69
8943624--8943648	2	12.5	2	100	0	50	52	0	0	48	1.00
8953881--8953939	25	2.4	25	83	11	77	40	5	11	42	1.64
8954915--8954955	17	2.4	17	84	8	57	39	0	14	46	1.45
8955176--8955259	39	2.2	39	88	0	123	25	17	11	45	1.83
8955394--8955484	27	3.4	26	77	6	92	35	9	24	30	1.88
8955416--8955546	27	4.9	27	72	8	88	35	14	22	27	1.93
8955568--8955652	27	3.1	27	76	6	91	36	18	14	30	1.91
8955553--8955679	54	2.3	55	78	4	132	36	16	16	30	1.91
8971710--8971980	137	2.0	137	97	0	506	36	21	9	33	1.85
8975272--8975322	25	2.1	23	82	7	57	72	7	9	9	1.28
9014181--9014210	2	15.0	2	100	0	60	50	0	0	50	1.00
9024978--9025006	2	14.5	2	100	0	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9025525--9025555	15	2.1	15	93	0	53	35	9	25	29	1.88
9025549--9025597	18	2.7	18	83	0	62	42	0	28	28	1.56
9025496--9025591	15	6.4	15	73	4	50	39	3	27	30	1.72
9033378--9033446	30	2.3	30	82	5	86	56	7	1	34	1.36
9035436--9035462	2	13.5	2	100	0	54	51	0	0	48	1.00
9039100--9039159	22	2.8	22	80	12	70	20	0	1	78	0.84
9039085--9039158	37	1.9	38	83	5	96	21	1	1	75	0.95
9039102--9039159	15	3.8	15	78	17	66	20	0	1	77	0.86
9042533--9042710	88	2.0	88	97	0	338	35	12	9	42	1.75
9043433--9043518	27	3.2	27	81	3	93	20	15	15	48	1.80
9043907--9044023	60	2.0	60	81	6	139	47	11	6	35	1.66
9043983--9044157	88	2.0	87	95	1	314	50	9	8	31	1.64
9044213--9044256	22	2.0	22	90	0	70	36	9	15	38	1.80
9051989--9052089	48	2.2	46	89	5	150	30	19	5	43	1.75
9059117--9059145	2	14.5	2	100	0	58	51	0	0	48	1.00
9059524--9059756	95	2.5	94	83	3	263	36	15	14	32	1.88
9067222--9067276	27	2.0	27	100	0	110	43	23	18	14	1.87
9070947--9070984	17	2.2	18	85	4	51	36	0	2	60	1.11
9071208--9071274	33	2.0	33	88	0	98	43	4	8	43	1.56
9073820--9075158	228	5.9	228	85	1	1461	29	21	23	23	1.99
9078295--9078380	35	2.5	35	88	0	109	26	12	16	44	1.84
9078307--9078381	35	2.1	35	92	0	123	24	14	14	46	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9078013--9078526	262	2.0	262	87	2	746	25	14	17	43	1.86
9078440--9078531	35	2.6	35	80	0	94	27	16	14	42	1.86
9078479--9078545	35	1.9	35	84	0	89	23	11	17	46	1.82
9080011--9080062	3	16.7	3	82	4	59	63	1	3	30	1.23
9083001--9083031	12	2.6	12	100	0	62	51	6	22	19	1.69
9084299--9084342	18	2.4	18	96	0	79	27	29	11	31	1.91
9090636--9090675	19	2.1	19	100	0	80	52	15	5	27	1.63
9091211--9091287	38	2.0	38	100	0	154	58	10	15	15	1.63
9099404--9099453	21	2.4	21	83	6	66	28	46	12	14	1.79
9104608--9104652	23	2.0	23	91	4	74	8	31	11	48	1.69
9108673--9108757	42	2.0	42	90	0	134	29	9	23	37	1.86
9116659--9116798	64	2.2	63	82	5	156	37	9	17	35	1.82
9121671--9121765	36	2.6	36	91	0	154	32	38	8	20	1.82
9121512--9121714	53	3.8	54	89	1	284	27	40	11	20	1.87
9121894--9122080	63	3.0	63	90	0	293	22	41	12	22	1.88
9123159--9123302	71	2.0	71	91	2	236	43	10	8	37	1.69
9123330--9123361	15	2.1	15	100	0	64	34	0	28	37	1.57
9123481--9123552	29	2.4	29	83	2	81	43	4	6	45	1.50
9123481--9123574	30	3.2	29	81	6	91	43	5	7	43	1.55
9125087--9125139	27	1.9	28	82	17	67	58	0	0	41	0.98
9127823--9127876	24	2.3	24	83	3	74	37	14	7	40	1.74
9128312--9128349	18	2.2	17	90	4	58	36	2	15	44	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9128312--9128363	17	3.0	17	86	8	61	36	3	13	46	1.62
9129240--9129443	27	7.6	27	77	8	182	36	7	14	41	1.75
9129201--9129445	55	4.5	54	75	11	198	34	7	15	42	1.75
9129207--9129460	27	9.4	28	74	13	149	35	7	15	41	1.76
9140407--9140457	2	25.5	2	95	0	93	49	0	1	49	1.12
9144119--9144148	5	6.2	5	96	3	53	0	40	20	40	1.52
9145279--9145323	23	1.9	24	86	4	65	26	28	6	37	1.82
9146933--9146958	12	2.2	12	100	0	52	42	26	0	30	1.56
9147437--9147506	15	4.1	16	79	15	61	68	1	1	28	1.06
9147440--9147514	31	2.3	33	82	8	84	68	1	1	29	1.06
9147444--9147555	55	2.0	55	83	13	142	67	1	2	27	1.14
9147537--9147771	15	16.0	15	65	26	62	60	0	5	33	1.22
9147487--9147776	114	2.5	111	82	10	282	61	0	4	32	1.22
9147582--9147754	54	3.1	54	70	21	158	59	0	5	34	1.26
9147624--9147691	24	2.9	24	68	18	61	66	0	1	32	1.01
9147643--9147674	16	1.9	16	93	6	55	68	0	0	31	0.90
9148936--9148975	19	2.1	19	86	9	55	27	10	7	55	1.60
9149620--9149676	3	19.0	3	100	0	114	33	0	0	66	0.92
9152421--9152520	50	2.0	50	88	0	146	51	13	22	14	1.76
9153010--9153037	2	14.0	2	100	0	56	50	0	0	50	1.00
9154897--9154924	2	14.0	2	100	0	56	50	0	0	50	1.00
9161960--9161994	2	17.5	2	100	0	70	48	0	51	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9170220--9170255	12	2.9	12	95	4	63	44	0	55	0	0.99
9173595--9173619	12	2.1	12	100	0	50	32	60	0	8	1.26
9187344--9187398	27	2.0	27	85	0	74	27	27	9	36	1.87
9200638--9200680	19	2.2	21	84	12	56	16	4	2	76	1.05
9213369--9213427	20	3.1	19	72	15	50	45	3	0	50	1.18
9213957--9213987	2	15.5	2	100	0	62	0	48	0	51	1.00
9221444--9222099	344	1.9	344	92	0	1107	37	11	13	37	1.81
9229116--9229324	103	2.0	103	99	0	409	29	22	16	31	1.96
9237392--9237465	23	3.3	23	79	5	89	37	29	8	24	1.84
9237391--9237495	45	2.3	46	85	8	135	39	27	8	24	1.84
9238409--9238453	20	2.2	20	84	0	54	8	6	13	71	1.31
9254682--9254796	57	2.0	57	98	0	221	46	6	14	31	1.71
9255258--9255282	11	2.3	11	100	0	50	64	12	8	16	1.49
9266980--9267006	10	2.7	10	100	0	54	40	0	7	51	1.30
9267607--9267632	2	13.0	2	100	0	52	50	0	0	50	1.00
9274009--9274037	15	1.9	15	100	0	58	13	13	10	62	1.55
9274163--9274204	17	2.5	17	100	0	84	40	14	19	26	1.89
9282888--9283043	65	2.4	65	82	2	179	21	14	18	45	1.85
9283120--9283244	56	2.2	55	86	6	171	25	12	13	48	1.78
9283458--9283495	20	1.9	20	88	0	58	42	7	15	34	1.76
9288446--9288492	20	2.3	20	78	10	51	36	12	10	40	1.78
9296066--9296130	30	2.2	31	83	5	89	33	9	7	49	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9298563--9298589	3	9.0	3	100	0	54	33	0	66	0	0.92
9304850--9304895	24	1.9	24	86	0	65	58	8	21	10	1.58
9319095--9319274	90	2.0	90	91	2	290	35	11	9	43	1.73
9335738--9335768	5	6.2	5	92	0	53	61	3	0	35	1.12
9335795--9335828	18	1.9	17	88	5	50	38	8	5	47	1.59
9338197--9338221	3	8.3	3	100	0	50	36	0	0	64	0.94
9340984--9341033	19	2.6	19	76	14	50	72	0	0	28	0.86
9347321--9347346	2	13.0	2	100	0	52	50	0	50	0	1.00
9350691--9350721	16	1.9	16	93	0	53	41	0	3	54	1.16
9356703--9356747	24	1.9	24	81	4	56	42	13	22	22	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31