genome.fa.s2.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397255.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_44.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14367614

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   

This is table  24  of  31  ( 3649 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11491891--11491958	27	2.6	27	78	2	84	19	11	35	33	1.88
11493752--11493831	26	3.1	26	96	0	142	27	27	16	28	1.97
11495589--11495616	13	2.2	13	100	0	56	57	0	7	35	1.26
11497714--11497744	14	2.2	14	94	0	53	12	12	58	16	1.64
11504097--11504124	8	3.5	8	100	0	56	14	10	25	50	1.75
11505310--11505374	30	2.2	30	100	0	130	38	23	13	24	1.91
11507027--11507063	18	2.1	18	90	5	58	75	5	0	18	0.99
11508052--11508099	9	5.3	9	79	0	60	27	14	20	37	1.92
11508053--11508099	18	2.6	18	100	0	94	27	14	21	36	1.93
11508544--11508620	27	2.9	27	90	0	127	59	10	12	16	1.60
11509159--11509195	16	2.3	16	85	0	56	62	2	2	32	1.23
11511078--11511121	21	2.0	22	91	4	72	31	0	6	61	1.22
11512165--11512208	21	2.0	22	91	4	72	31	0	6	61	1.22
11520986--11521119	72	1.9	71	80	12	157	30	22	8	38	1.85
11531856--11532430	42	13.4	42	68	16	261	44	8	8	39	1.64
11531948--11531984	18	2.2	18	86	13	53	51	8	2	37	1.46
11531708--11532489	86	9.0	85	83	4	883	44	7	8	38	1.63
11532739--11532803	29	2.2	29	78	5	69	64	3	10	21	1.38
11533706--11533812	31	3.6	30	82	7	119	33	6	5	54	1.50
11536898--11536922	4	6.2	4	100	0	50	76	0	24	0	0.80
11542481--11542545	18	3.6	18	80	0	76	43	7	9	40	1.65
11551862--11551890	13	2.1	14	93	6	51	68	6	3	20	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11566328--11566441	50	2.3	49	81	4	138	32	13	20	34	1.91
11575500--11575576	29	2.7	29	81	4	75	51	11	20	15	1.74
11575769--11575813	18	2.5	18	82	7	56	20	15	11	53	1.72
11592423--11592460	13	3.0	13	88	3	51	39	0	0	60	0.97
11592677--11592724	21	2.3	21	88	0	69	54	6	8	31	1.55
11594624--11594715	48	1.9	48	95	0	166	36	27	6	29	1.82
11602435--11602475	21	1.9	22	85	5	57	53	12	7	26	1.64
11607845--11607939	42	2.2	42	87	9	131	22	13	20	44	1.86
11609590--11609708	61	2.0	60	91	1	193	33	14	21	31	1.93
11613744--11613768	2	12.5	2	100	0	50	52	0	0	48	1.00
11619105--11619142	17	2.2	17	95	0	67	39	10	7	42	1.69
11620516--11620545	15	1.9	16	93	6	53	40	23	3	33	1.71
11625147--11625171	6	4.2	6	100	0	50	32	0	52	16	1.44
11627394--11627440	22	2.1	22	84	7	60	44	4	2	48	1.34
11631913--11631944	15	2.1	16	94	5	57	53	0	0	46	1.00
11645559--11645597	10	3.9	10	83	12	53	28	2	0	69	1.02
11645549--11645595	16	2.8	16	84	15	60	27	2	0	70	0.99
11646976--11647013	12	3.2	12	82	10	51	73	2	0	23	0.95
11652422--11652448	2	13.5	2	100	0	54	0	48	0	51	1.00
11652448--11652493	2	23.0	2	90	0	74	50	0	4	45	1.21
11658194--11658246	21	2.5	21	78	0	61	18	13	33	33	1.90
11658343--11658414	31	2.3	31	82	2	81	34	15	12	37	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11659326--11659365	21	1.9	21	89	0	62	22	17	25	35	1.95
11674781--11674815	2	18.0	2	88	5	54	54	0	45	0	0.99
11675361--11675399	15	2.7	15	88	4	53	56	2	2	38	1.27
11675642--11675690	21	2.6	18	79	17	55	40	6	0	53	1.26
11675702--11675747	15	3.1	15	76	14	51	50	2	0	47	1.13
11675314--11676405	325	3.2	338	78	9	1203	39	7	6	44	1.59
11676310--11676346	17	2.2	17	90	0	56	43	8	2	45	1.47
11677045--11677087	21	2.0	22	86	13	63	72	0	11	16	1.13
11684075--11684264	94	2.0	94	92	0	317	34	10	16	38	1.83
11684289--11684441	32	4.6	32	78	5	135	43	17	15	22	1.87
11694032--11694071	21	2.0	20	85	5	53	30	15	7	47	1.72
11694278--11694447	80	2.1	80	80	2	180	35	17	10	37	1.83
11695183--11695234	25	2.1	25	82	7	61	50	7	15	26	1.71
11704515--11704543	2	14.5	2	100	0	58	51	0	0	48	1.00
11704909--11704978	30	2.2	32	80	14	92	42	12	11	32	1.79
11704918--11704974	30	1.9	30	92	0	96	36	14	12	36	1.83
11713836--11713879	23	1.9	23	86	9	63	45	6	15	31	1.73
11714349--11714393	14	3.2	14	74	0	54	42	4	2	51	1.34
11714347--11714405	28	2.1	28	96	0	109	44	3	3	49	1.36
11727905--11727940	17	2.1	17	89	0	54	19	27	11	41	1.85
11742940--11743042	31	3.3	31	77	12	88	65	2	5	26	1.30
11743033--11743118	33	2.5	33	85	7	102	66	0	4	29	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11743338--11743376	15	2.6	15	87	0	60	35	20	5	38	1.75
11759265--11759301	15	2.4	16	86	8	51	43	0	0	56	0.99
11759265--11759309	20	2.2	20	88	7	65	44	0	0	55	0.99
11759263--11759309	25	2.0	25	84	16	64	44	0	0	55	0.99
11759428--11759483	29	1.9	29	85	7	78	57	1	3	37	1.27
11759719--11759968	138	1.8	138	83	1	313	40	12	10	36	1.78
11760470--11760510	18	2.2	19	86	4	57	46	2	0	51	1.14
11760875--11760911	14	2.6	14	100	0	74	62	5	0	32	1.18
11764590--11764658	28	2.5	28	90	0	102	23	18	17	40	1.91
11765149--11765265	38	3.1	38	64	22	93	47	11	15	24	1.79
11765022--11765291	74	3.6	74	93	0	441	44	14	17	23	1.85
11766056--11766143	26	3.4	26	83	0	113	34	20	9	36	1.84
11767809--11767907	14	6.9	14	66	4	63	31	30	6	32	1.82
11767839--11767913	15	5.1	15	73	9	57	32	33	5	29	1.80
11767810--11767907	43	2.3	43	98	0	187	31	30	6	31	1.82
11773206--11773258	15	3.5	14	72	18	52	9	32	0	58	1.30
11777567--11777632	28	2.4	28	84	2	89	63	13	1	21	1.37
11780053--11780133	37	2.2	37	86	0	117	49	22	4	23	1.69
11780609--11780646	12	3.2	12	81	11	51	15	7	55	21	1.66
11789815--11789871	22	2.6	23	73	15	57	42	1	0	56	1.10
11793586--11793610	2	12.5	2	100	0	50	52	0	0	48	1.00
11809356--11809384	2	14.5	2	100	0	58	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11810501--11810560	30	2.0	30	83	6	77	56	5	0	38	1.21
11819728--11819752	13	1.9	13	100	0	50	24	4	0	72	1.02
11821139--11821274	73	1.9	73	95	0	245	34	23	13	28	1.92
11825004--11825107	51	2.0	51	92	0	172	31	14	19	34	1.92
11834355--11834709	57	6.2	57	74	5	239	33	24	13	27	1.93
11834355--11834709	116	3.1	115	78	2	338	33	24	13	27	1.93
11834902--11835127	112	2.0	112	88	0	335	35	24	12	26	1.92
11839885--11839915	16	1.9	16	93	0	53	25	25	25	22	2.00
11841839--11841894	26	2.1	28	90	6	89	55	0	5	39	1.23
11857208--11857273	34	2.0	31	85	8	87	54	1	4	39	1.30
11859263--11859292	2	15.0	2	100	0	60	0	50	0	50	1.00
11863447--11863948	254	2.0	254	93	0	860	23	14	20	41	1.90
11875523--11875556	14	2.4	14	90	9	52	38	0	2	58	1.13
11879800--11879869	36	1.9	36	85	5	97	24	52	5	17	1.65
11883408--11883451	20	2.1	21	91	4	72	47	13	18	20	1.82
11889511--11889545	18	2.0	18	88	5	54	48	0	22	28	1.51
11901413--11901475	12	5.1	12	77	7	63	69	7	0	22	1.13
11902578--11902636	23	2.4	25	88	11	86	49	0	0	50	1.00
11902738--11902804	30	2.3	30	84	2	82	32	14	5	46	1.69
11904404--11904454	26	2.0	26	84	0	66	39	9	15	35	1.81
11904516--11904608	27	3.4	27	79	4	98	40	10	9	38	1.73
11904400--11904712	151	2.1	151	78	6	337	40	9	15	34	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11904804--11904843	21	1.9	21	89	0	62	57	0	12	30	1.36
11911832--11911875	13	3.4	13	84	15	56	70	0	0	29	0.88
11911810--11911874	22	2.9	23	77	13	64	67	0	6	26	1.13
11917685--11917775	47	2.0	46	85	8	123	37	2	16	43	1.60
11926128--11926615	202	2.4	201	86	2	656	42	24	11	21	1.86
11935265--11935307	2	22.5	2	82	17	56	48	2	0	48	1.14
11937241--11937306	30	2.2	30	88	0	96	22	27	24	25	2.00
11940626--11940694	9	7.7	9	73	12	52	47	0	1	50	1.09
11945618--11945684	24	2.8	24	80	13	75	56	23	0	19	1.42
11965757--11965800	21	2.0	22	86	4	63	63	6	0	29	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31