genome.fa.s2.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397255.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_44.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14367614

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   

This is table  20  of  31  ( 3649 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9662093--9662191	25	4.0	25	86	5	146	21	0	25	53	1.46
9667351--9667501	79	1.9	79	95	0	275	17	23	21	37	1.94
9677592--9677631	19	2.1	19	100	0	80	32	15	10	42	1.79
9692643--9692690	2	23.5	2	87	4	69	45	2	4	47	1.33
9702529--9702577	15	3.4	14	75	10	53	69	0	4	26	1.06
9702547--9702607	18	3.6	17	77	18	56	67	3	1	27	1.16
9702978--9703013	16	2.2	16	95	0	63	19	0	36	44	1.51
9703867--9703927	29	2.1	29	93	0	104	54	6	11	27	1.61
9706245--9706280	2	18.0	2	100	0	72	50	0	0	50	1.00
9708906--9708979	37	2.0	37	100	0	148	21	2	27	48	1.63
9709249--9709286	6	6.3	6	100	0	76	15	31	34	18	1.92
9724253--9724303	21	2.5	20	87	6	77	62	3	0	33	1.13
9737649--9737684	18	2.0	18	88	0	54	72	0	0	27	0.85
9737741--9737804	23	3.0	22	77	18	64	43	0	0	56	0.99
9739425--9739450	13	2.0	13	100	0	52	38	15	7	38	1.76
9742828--9742865	19	2.0	19	89	0	58	15	42	10	31	1.81
9745276--9745351	28	2.6	29	83	4	100	61	1	0	36	1.04
9746033--9746068	14	2.5	14	90	4	54	25	2	0	72	0.98
9746870--9746899	2	15.0	2	92	0	51	46	0	3	50	1.18
9747424--9747463	7	5.9	7	94	5	73	30	42	15	12	1.83
9748217--9748241	13	1.9	13	100	0	50	84	0	16	0	0.63
9758089--9758117	2	14.5	2	100	0	58	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9758883--9759344	206	2.2	205	81	1	521	37	8	20	33	1.84
9758883--9759437	206	2.7	206	79	2	499	37	8	20	32	1.84
9765898--9765928	6	5.2	6	100	0	62	83	0	0	16	0.64
9772652--9772696	22	2.0	22	86	0	63	31	26	13	28	1.94
9772714--9772772	22	2.7	22	81	0	73	47	23	6	22	1.75
9772703--9772792	44	2.0	44	82	0	108	48	20	6	24	1.73
9779567--9779617	24	2.1	24	85	0	66	21	13	9	54	1.67
9786801--9786838	6	6.3	6	96	0	67	65	13	21	0	1.26
9788832--9788897	25	2.6	25	72	11	62	42	3	1	53	1.25
9789338--9789377	2	20.0	2	100	0	80	50	0	0	50	1.00
9793461--9793492	14	2.3	14	100	0	64	84	0	15	0	0.63
9795203--9795256	13	3.9	14	73	20	51	27	0	1	70	0.98
9795237--9795305	29	2.4	28	72	15	68	30	5	0	63	1.17
9795300--9795353	14	4.0	13	77	13	56	29	0	0	70	0.88
9797276--9797537	130	2.0	131	95	2	474	34	17	16	30	1.93
9820001--9821059	534	2.0	531	84	3	1378	33	16	14	36	1.88
9839182--9839219	19	2.0	19	89	0	58	47	5	0	47	1.24
9839840--9839883	14	3.1	14	96	0	79	25	13	15	45	1.83
9842921--9842949	15	2.0	15	93	6	51	41	6	0	51	1.28
9843018--9843062	20	2.3	21	85	11	60	53	13	0	33	1.40
9849676--9849752	22	3.5	22	79	13	86	50	12	5	31	1.63
9852799--9852842	4	11.0	4	100	0	88	25	0	25	50	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9855657--9855683	13	2.1	13	100	0	54	29	11	44	14	1.80
9866618--9866642	13	1.9	13	100	0	50	0	16	16	68	1.22
9875352--9875424	35	2.1	35	94	0	128	26	32	2	38	1.71
9877012--9877038	2	13.5	2	100	0	54	48	0	0	51	1.00
9898115--9898167	23	2.3	23	86	0	79	22	3	30	43	1.71
9898231--9898326	21	4.4	22	77	6	97	47	21	7	22	1.75
9898231--9898307	22	3.5	21	77	11	75	48	22	7	22	1.76
9900290--9900341	22	2.3	22	80	3	59	23	13	28	34	1.92
9902433--9902482	23	2.2	23	85	0	64	38	26	10	26	1.87
9911062--9911086	2	12.5	2	100	0	50	52	0	0	48	1.00
9911457--9911502	2	23.0	2	100	0	92	50	0	0	50	1.00
9913507--9913571	29	2.2	29	78	10	69	61	4	6	27	1.40
9915268--9915311	20	2.2	20	84	12	54	52	0	2	45	1.13
9917374--9917400	13	2.1	13	100	0	54	40	14	14	29	1.86
9919809--9919867	31	1.9	31	85	0	82	27	27	1	44	1.64
9919826--9919893	31	2.2	31	82	7	77	29	25	5	39	1.79
9919869--9919938	30	2.3	29	83	9	79	30	15	4	50	1.64
9920378--9920432	22	2.7	19	83	8	65	38	3	0	58	1.16
9920780--9920821	21	2.0	20	86	4	57	11	0	30	57	1.35
9921355--9921405	15	3.4	15	74	17	52	68	0	7	23	1.15
9921350--9921413	29	2.2	28	81	8	67	60	0	9	29	1.28
9928685--9928729	22	2.1	22	84	12	58	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9929672--9929767	39	2.3	42	79	15	119	20	57	9	12	1.63
9929708--9929846	39	3.5	40	83	5	142	16	56	11	15	1.68
9929897--9929941	23	2.0	23	90	0	72	17	55	8	17	1.67
9933662--9933716	28	1.9	29	85	3	76	60	0	1	38	1.08
9935914--9935943	2	15.0	2	100	0	60	50	0	0	50	1.00
9936304--9936370	27	2.5	27	95	0	116	10	50	16	22	1.75
9945152--9945188	18	2.2	16	90	9	56	75	0	8	16	1.02
9948017--9948091	36	2.1	36	89	0	114	33	8	2	56	1.43
9948315--9948378	28	2.3	29	81	13	80	59	0	6	34	1.23
9949522--9949550	5	5.8	5	100	0	58	41	17	0	41	1.49
9953808--9953839	15	2.1	15	100	0	64	18	18	6	56	1.62
9964958--9964996	16	2.4	17	80	20	55	48	0	0	51	1.00
9965028--9965078	21	2.4	21	80	3	57	52	0	0	47	1.00
9966732--9967233	250	2.0	250	99	0	986	38	18	18	24	1.93
9975225--9975262	18	2.1	18	90	0	58	31	5	2	60	1.33
10006497--10006545	24	2.0	24	84	7	64	26	0	0	73	0.83
10006510--10006547	15	2.5	16	87	8	53	23	0	0	76	0.79
10007255--10007293	21	1.9	21	89	5	62	43	5	0	51	1.24
10007251--10007368	33	3.6	33	76	2	121	43	5	5	45	1.50
10007239--10007368	65	2.0	65	86	0	179	43	8	4	43	1.55
10008666--10008732	32	2.1	32	85	0	89	38	17	10	32	1.84
10009755--10009809	29	1.9	28	82	10	67	32	12	3	50	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10009796--10009860	30	2.2	29	88	2	94	32	7	9	50	1.63
10016528--10016562	2	17.5	2	100	0	70	48	0	0	51	1.00
10016868--10016906	2	19.5	2	100	0	78	0	0	48	51	1.00
10041086--10041224	75	1.9	75	89	0	215	28	7	38	26	1.83
10041170--10041223	23	2.3	23	74	0	54	29	9	35	25	1.87
10041252--10041306	23	2.4	23	78	0	56	32	9	32	25	1.87
10041618--10041689	23	3.1	23	73	0	72	29	19	26	25	1.99
10042362--10042531	31	5.5	31	82	0	205	32	14	15	37	1.89
10042363--10042535	93	1.9	92	85	3	240	32	13	15	38	1.87
10049450--10049516	35	1.9	35	90	3	109	46	5	20	26	1.74
10049501--10049568	30	2.2	30	92	2	109	33	10	26	29	1.89
10055828--10055879	14	3.7	14	72	10	52	51	0	0	48	1.00
10059142--10059236	45	2.1	45	94	0	163	28	16	26	28	1.97
10060495--10060524	11	2.8	11	95	5	53	66	6	0	26	1.16
10061291--10061993	113	6.5	112	78	11	650	50	3	6	39	1.45
10061704--10061979	111	2.4	112	83	9	321	52	4	5	38	1.43
10061803--10061903	12	8.4	12	69	18	59	58	2	0	37	1.20
10067328--10067368	17	2.4	17	100	0	82	12	4	34	48	1.62
10071516--10071549	18	1.9	17	88	5	50	8	44	0	47	1.34
10080360--10080419	31	1.9	32	83	10	79	53	8	5	33	1.53
10086387--10086414	3	9.3	3	100	0	56	32	0	32	35	1.58
10087535--10087566	2	16.0	2	100	0	64	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10090475--10090499	12	2.1	12	100	0	50	40	0	0	60	0.97
10090617--10090644	2	14.0	2	100	0	56	50	0	0	50	1.00
10093116--10093996	252	3.6	252	78	8	736	44	7	12	35	1.70
10093711--10094176	251	1.9	251	78	8	518	47	4	11	36	1.61
10100993--10101033	21	2.0	20	90	4	64	51	19	4	24	1.66
10101340--10101374	17	2.1	17	88	0	52	28	2	8	60	1.41
10102455--10102483	2	14.5	2	100	0	58	48	0	0	51	1.00
10121492--10121532	21	2.0	21	95	0	73	41	2	14	41	1.59
10121719--10121752	2	17.0	2	93	0	59	47	0	0	52	1.00
10127753--10127793	21	2.0	21	100	0	82	41	0	14	43	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31