genome.fa.s2.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397255.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_44.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14367614

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   

This is table  21  of  31  ( 3649 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10128737--10128795	18	3.4	18	72	21	54	10	15	0	74	1.06
10130396--10130530	47	2.9	47	81	3	139	35	4	13	46	1.63
10153441--10153471	16	2.0	15	93	6	53	38	6	9	45	1.63
10155809--10155849	2	20.5	2	89	0	64	56	0	0	43	0.99
10164856--10164897	13	3.3	13	75	18	52	61	7	7	23	1.47
10164856--10164907	25	2.1	25	100	0	104	59	7	7	25	1.51
10166413--10166454	21	2.0	20	86	4	57	40	7	9	42	1.65
10166913--10166951	17	2.2	18	90	9	62	46	5	12	35	1.65
10169024--10169107	35	2.4	36	84	4	100	50	13	11	25	1.75
10170482--10170550	22	2.9	22	76	16	66	50	1	0	47	1.09
10170487--10170546	8	7.4	8	71	17	52	53	0	0	46	1.00
10171657--10171705	6	8.2	6	88	0	71	48	0	0	51	1.00
10173350--10173375	2	13.0	2	100	0	52	50	0	50	0	1.00
10176556--10176630	34	2.1	34	83	11	89	0	38	60	1	1.06
10176602--10176659	13	4.5	13	74	16	50	3	39	56	0	1.16
10177019--10177082	28	2.4	26	80	14	76	0	39	57	3	1.14
10180944--10180975	14	2.3	14	94	0	55	50	9	40	0	1.35
10183033--10183069	17	2.1	18	85	14	51	37	2	10	48	1.52
10183032--10183085	18	3.2	17	80	19	60	37	1	7	53	1.40
10187340--10187388	15	3.3	15	79	0	53	36	4	20	38	1.72
10188121--10188202	38	2.1	38	86	2	110	7	23	18	51	1.71
10198829--10198855	2	13.5	2	100	0	54	51	48	0	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10204411--10204442	2	16.0	2	100	0	64	0	0	50	50	1.00
10206345--10206379	14	2.5	14	86	13	54	0	17	0	82	0.66
10206345--10206380	13	2.7	14	91	8	58	0	19	0	80	0.71
10210839--10210871	6	5.8	6	96	3	52	0	0	9	90	0.44
10211027--10211053	4	6.8	4	100	0	54	0	22	0	77	0.76
10216937--10216965	2	14.5	2	100	0	58	51	0	0	48	1.00
10218929--10219011	42	2.0	42	97	0	157	39	20	21	18	1.92
10232049--10232074	2	13.0	2	100	0	52	50	0	0	50	1.00
10232295--10232327	2	16.5	2	100	0	66	51	0	0	48	1.00
10236992--10237058	32	2.1	33	91	5	111	37	16	17	28	1.92
10265051--10265076	8	3.2	8	100	0	52	88	0	11	0	0.52
10265633--10265657	2	12.5	2	100	0	50	52	0	0	48	1.00
10267974--10268058	21	4.4	19	69	15	59	55	0	0	44	0.99
10269543--10269602	29	2.1	27	84	6	75	46	1	1	50	1.21
10269817--10269850	16	2.1	16	88	0	50	38	2	5	52	1.41
10277708--10277738	4	7.8	4	100	0	62	74	0	0	25	0.82
10281021--10281060	19	2.2	17	86	8	53	25	5	0	70	1.08
10281024--10281060	16	2.2	18	86	13	53	27	5	0	67	1.12
10283039--10283091	21	2.7	20	83	13	58	60	0	0	39	0.97
10284820--10284868	25	2.0	25	87	0	71	51	10	2	36	1.48
10285017--10285049	16	2.1	16	100	0	66	33	18	6	42	1.75
10285290--10285328	12	3.2	12	81	0	51	64	2	0	33	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10287647--10287767	41	3.1	41	66	20	123	46	9	8	36	1.66
10287625--10287774	75	2.0	75	98	1	293	44	9	8	38	1.66
10289819--10289857	7	5.7	7	96	3	71	43	0	15	41	1.46
10293114--10293146	3	11.7	3	87	12	52	69	0	0	30	0.88
10293114--10293146	14	2.4	14	90	10	50	69	0	0	30	0.88
10293114--10293146	17	1.9	17	93	0	57	69	0	0	30	0.88
10293615--10293650	13	2.8	13	95	0	63	16	30	16	36	1.91
10301229--10301274	19	2.4	19	100	0	92	28	8	28	34	1.87
10313037--10313065	2	15.0	2	92	7	51	48	0	0	51	1.00
10314186--10314232	2	23.5	2	82	0	58	44	2	51	2	1.25
10314193--10314254	16	3.9	16	80	0	61	45	3	51	0	1.17
10314615--10314652	15	2.5	16	83	12	53	5	2	21	71	1.19
10314603--10314652	24	2.0	24	84	11	64	6	4	22	68	1.29
10315345--10315380	2	18.0	2	94	0	63	47	0	0	52	1.00
10319548--10319612	23	2.7	23	78	7	67	49	0	3	47	1.17
10319584--10319619	16	2.2	16	90	0	54	44	0	0	55	0.99
10319625--10319675	24	2.2	24	86	10	70	74	0	3	21	0.98
10319687--10319720	16	2.2	16	89	5	52	47	0	0	52	1.00
10321157--10321193	18	2.1	18	100	0	74	37	16	0	45	1.47
10321431--10321465	17	2.0	18	88	5	54	51	5	0	42	1.25
10332686--10332767	26	3.1	27	79	6	80	39	9	20	30	1.85
10339914--10340030	3	39.0	3	91	0	189	65	0	33	0	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10355470--10355536	28	2.4	28	85	7	91	44	19	11	23	1.84
10358445--10358482	19	2.0	19	100	0	76	47	10	21	21	1.80
10358599--10358694	45	2.1	45	100	0	192	29	19	18	32	1.96
10358599--10358705	45	2.4	45	95	3	180	30	20	16	31	1.95
10360594--10360749	39	4.0	38	80	6	152	44	17	6	31	1.74
10370206--10370231	6	4.3	6	100	0	52	65	0	0	34	0.93
10370575--10370620	24	1.9	24	86	0	65	28	30	10	30	1.91
10381785--10381828	2	22.0	2	90	0	70	45	0	4	50	1.22
10401120--10401146	2	13.5	2	100	0	54	48	0	0	51	1.00
10401623--10401684	3	20.7	3	100	0	124	33	0	0	66	0.92
10401742--10401770	2	15.0	2	92	7	51	48	0	0	51	1.00
10401842--10401868	2	13.5	2	100	0	54	48	0	0	51	1.00
10402725--10402795	30	2.6	25	79	18	79	57	2	2	36	1.28
10402725--10402838	26	4.2	26	73	7	84	52	4	5	37	1.44
10402780--10402903	24	4.9	26	71	9	78	44	7	7	41	1.60
10405824--10405910	29	3.3	26	73	18	81	42	3	6	47	1.47
10405845--10405884	20	1.9	20	90	10	62	47	0	5	47	1.24
10405813--10405911	51	1.9	53	85	4	139	43	3	7	46	1.46
10405810--10405908	29	3.7	27	71	20	73	42	3	8	46	1.48
10406104--10406161	24	2.4	24	80	8	64	31	8	18	41	1.81
10411028--10411059	2	16.0	2	93	0	55	46	0	3	50	1.17
10419556--10419590	16	2.1	17	89	5	54	25	2	0	71	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10421055--10421096	13	3.2	13	86	6	59	35	0	21	42	1.53
10420913--10421223	85	3.7	85	85	3	425	40	1	15	42	1.57
10423617--10423671	24	2.2	25	87	3	76	43	1	9	45	1.46
10425855--10426201	174	2.0	175	84	3	459	24	5	22	48	1.71
10431693--10431730	12	3.2	12	92	0	58	50	10	7	31	1.66
10449622--10449659	19	2.0	19	89	0	58	39	7	7	44	1.63
10449632--10449668	19	1.9	19	88	0	56	43	8	5	43	1.57
10462938--10462996	27	2.4	23	88	11	82	30	8	5	55	1.51
10474989--10475013	2	12.5	2	100	0	50	52	0	0	48	1.00
10478316--10478380	30	2.2	30	88	0	94	49	4	10	35	1.58
10492815--10493166	176	2.0	176	87	4	514	46	7	11	33	1.69
10494281--10494317	15	2.4	16	82	17	51	54	2	0	43	1.14
10494592--10494629	15	2.4	16	80	20	53	55	0	0	44	0.99
10501559--10501589	15	2.1	15	93	0	53	45	19	16	19	1.86
10502822--10502850	2	14.5	2	100	0	58	51	0	0	48	1.00
10503124--10503148	2	12.5	2	100	0	50	52	0	0	48	1.00
10512735--10512779	24	1.9	24	86	4	65	24	6	0	68	1.13
10512748--10512794	18	2.6	17	80	9	58	25	6	0	68	1.13
10515881--10515924	1	44.0	1	95	0	79	0	97	2	0	0.16
10520150--10520197	3	15.7	3	86	4	69	0	37	0	62	0.95
10521309--10521353	17	2.5	18	85	7	56	37	6	6	48	1.56
10524134--10524184	22	2.2	24	86	6	70	49	17	0	33	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10524149--10524196	24	2.1	22	84	7	60	47	22	0	29	1.51
10525478--10525512	17	2.2	17	90	10	56	42	0	0	57	0.99
10525731--10525768	14	2.7	15	84	12	53	39	0	0	60	0.97
10525779--10525813	18	2.0	17	88	5	52	51	0	0	48	1.00
10528207--10528244	19	2.0	20	85	10	53	23	7	5	63	1.42
10534709--10534767	30	2.0	30	86	0	82	50	6	6	35	1.55
10535144--10535219	30	2.6	30	79	8	84	32	3	6	56	1.43
10535144--10535219	29	2.6	29	79	8	82	32	3	6	56	1.43
10535390--10535458	30	2.3	30	89	0	102	50	4	5	39	1.46
10536141--10536171	2	15.5	2	93	0	53	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31