Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397255.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_44.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14367614

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   

This is table  31  of  31  ( 3649 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14187424--14187458
2
17.5
2
93
0
61
51
0
0
48
1.00
14187999--14188037
20
2.0
20
89
0
60
61
7
0
30
1.24
14190461--14190509
21
2.4
21
83
13
66
67
8
0
24
1.18
14190461--14190512
20
2.5
20
87
9
70
65
9
0
25
1.23
14195635--14195679
21
2.1
21
100
0
90
17
15
17
48
1.81
14196478--14196529
25
2.1
25
100
0
104
42
11
15
30
1.82
14198893--14199062
28
6.0
27
73
14
119
35
10
10
42
1.74
14198961--14199014
27
2.0
27
86
10
76
35
11
5
48
1.62
14198893--14199056
29
5.7
29
73
15
126
36
10
10
42
1.75
14201889--14201919
16
2.0
16
93
6
55
12
6
0
80
0.89
14202040--14202496
241
1.9
241
90
1
738
31
13
7
46
1.72
14206236--14206443
62
3.4
61
75
10
226
24
39
19
16
1.92
14206395--14206477
40
2.1
40
88
4
123
24
33
21
20
1.97
14206272--14206601
163
2.0
163
86
0
453
23
37
19
19
1.94
14206449--14206820
62
6.0
62
76
4
297
25
36
18
20
1.94
14206535--14206820
124
2.3
124
85
2
378
24
36
18
20
1.95
14206784--14206912
61
2.1
61
83
0
159
23
37
17
20
1.94
14209304--14209362
26
2.3
26
93
0
100
40
18
13
27
1.88
14209995--14210027
17
2.0
17
88
5
50
3
27
0
69
1.03
14210226--14210260
16
2.1
17
89
5
54
74
0
5
20
1.02
14213933--14213976
21
2.0
22
82
4
54
22
0
11
65
1.24
14218245--14218277
18
1.9
17
88
11
50
57
6
3
33
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14218251--14218285
18
1.9
18
88
0
52
60
8
2
28
1.41
14231211--14231400
74
2.6
74
83
6
215
43
16
16
22
1.87
14239671--14239696
6
4.3
6
100
0
52
30
30
19
19
1.96
14241108--14241380
74
3.7
74
90
0
420
43
15
17
23
1.87
14243206--14243278
29
2.4
29
84
4
92
24
12
17
45
1.83
14249557--14249599
19
2.3
19
87
0
59
39
11
9
39
1.74
14264713--14264746
2
17.0
2
87
0
50
50
2
47
0
1.16
14276293--14276345
14
3.3
15
79
15
54
66
3
0
30
1.10
14299503--14299595
33
2.8
32
80
11
89
29
3
2
65
1.20
14302669--14302840
71
2.4
71
81
5
197
36
18
18
27
1.94
14302737--14302926
71
2.6
71
83
4
195
35
18
18
27
1.95
14304433--14304552
63
1.9
63
92
0
204
35
14
5
44
1.69
14307166--14307245
21
3.9
20
75
17
58
65
6
2
26
1.29
14307179--14307245
19
3.3
19
74
18
55
65
7
1
25
1.27
14309477--14309511
2
17.5
2
100
0
70
51
0
0
48
1.00
14321876--14321919
21
2.0
22
86
4
63
61
9
0
29
1.27
14327495--14327614
47
2.6
47
93
0
195
46
11
5
35
1.64
14329288--14329349
22
2.9
21
80
4
72
33
27
11
27
1.91
14337323--14337360
20
1.9
20
94
0
67
31
10
15
42
1.81
14338727--14338791
32
2.0
32
82
5
78
33
6
4
55
1.45
14339972--14340028
29
1.9
30
86
10
82
57
3
1
36
1.26
14342797--14342825
13
2.1
14
93
6
51
41
20
10
27
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14342796--14342829
14
2.4
15
85
14
54
38
23
8
29
1.85
14343512--14343545
2
17.0
2
100
0
68
50
0
0
50
1.00
14349655--14350417
391
2.0
387
86
3
1075
33
17
16
32
1.92
14352131--14352173
18
2.4
18
84
7
52
53
9
23
13
1.69
14359678--14359764
36
2.4
36
79
11
97
17
24
19
39
1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31

The End!