genome.fa.s2.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397255.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_44.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14367614

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   

This is table  23  of  31  ( 3649 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10891871--10891897	2	13.5	2	100	0	54	51	48	0	0	1.00
10893307--10893363	30	1.9	30	85	0	78	43	14	8	33	1.76
10905203--10905229	14	1.9	14	100	0	54	44	3	0	51	1.19
10909899--10909943	22	2.1	22	83	4	56	62	4	20	13	1.48
10923039--10923092	28	1.9	28	96	0	99	35	3	1	59	1.26
10923349--10923427	30	2.7	30	80	7	99	56	0	0	43	0.99
10923359--10923425	26	2.5	28	77	13	79	58	0	0	41	0.98
10942302--10942342	21	2.0	21	85	9	57	24	4	0	70	1.06
10942325--10942366	16	2.6	16	81	7	50	19	4	4	71	1.22
10945891--10945917	4	6.8	4	100	0	54	74	0	0	25	0.83
10951400--10951474	39	1.9	39	83	0	96	28	10	18	42	1.83
10952506--10952568	16	4.7	14	71	23	55	47	3	4	44	1.40
10960748--10960783	14	2.6	14	95	0	63	55	8	8	27	1.58
10964003--10964123	59	2.1	59	84	3	154	38	12	17	32	1.87
10965295--10965382	29	3.0	28	72	18	81	46	4	23	25	1.71
10966512--10966557	23	2.0	23	84	16	60	15	4	10	69	1.32
10979684--10979759	35	2.2	35	85	2	100	60	13	0	26	1.33
10980053--10980108	17	3.5	17	68	26	50	44	0	7	48	1.30
10984816--10984853	6	6.3	6	96	0	67	21	15	63	0	1.31
10984811--10984853	18	2.4	18	88	0	68	23	13	62	0	1.31
11018660--11018742	42	2.0	42	87	0	121	28	2	37	31	1.70
11019229--11019272	15	2.9	15	83	12	63	36	0	22	40	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11019481--11019522	21	2.0	21	86	9	59	64	2	0	33	1.07
11020066--11020121	24	2.3	24	75	0	58	69	5	23	1	1.18
11020100--11020154	28	2.0	28	85	7	76	60	3	34	1	1.25
11020937--11021010	31	2.4	31	86	0	103	24	6	13	55	1.62
11035266--11035291	2	13.0	2	100	0	52	50	0	0	50	1.00
11037040--11037131	42	2.2	42	84	3	114	44	8	27	19	1.80
11046404--11046468	33	2.0	31	82	11	78	38	3	12	46	1.57
11047555--11047595	13	3.2	13	77	16	50	21	0	26	51	1.48
11048308--11048349	20	2.0	21	90	9	68	45	2	0	52	1.13
11048073--11048950	401	2.2	406	83	6	1118	43	4	9	41	1.58
11050610--11050665	20	2.8	19	79	12	60	32	8	14	44	1.76
11050931--11050985	21	2.5	22	79	5	67	56	7	1	34	1.38
11050985--11051047	21	3.0	21	81	9	83	47	19	7	25	1.76
11056798--11056852	28	2.0	28	85	7	76	23	7	14	54	1.65
11083536--11083726	98	2.0	97	94	1	337	49	6	8	35	1.58
11084848--11084874	2	13.5	2	100	0	54	51	0	0	48	1.00
11084885--11084922	9	4.2	9	90	10	60	73	0	0	26	0.83
11086315--11086346	2	16.0	2	100	0	64	50	0	0	50	1.00
11086940--11087138	98	2.0	98	93	0	335	47	7	10	34	1.65
11091301--11091338	16	2.4	16	82	13	51	50	0	2	47	1.15
11096591--11096623	15	2.2	15	94	0	57	18	3	48	30	1.63
11136445--11136479	5	7.0	5	90	0	52	74	0	22	2	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11137976--11138392	207	2.0	207	93	0	717	27	23	22	26	1.99
11141396--11141469	36	2.1	36	84	0	94	25	29	17	27	1.97
11150670--11150704	18	1.9	18	94	0	61	42	20	11	25	1.85
11157888--11157951	17	3.6	17	74	12	56	31	1	3	64	1.19
11159829--11159864	14	2.6	14	95	0	63	50	5	19	25	1.69
11162798--11162850	27	2.0	27	88	0	79	60	0	3	35	1.15
11164298--11164428	45	2.9	45	83	0	172	33	19	13	33	1.91
11168219--11168341	51	2.4	50	84	10	144	43	2	2	52	1.28
11168685--11168753	35	2.0	35	82	0	84	55	11	7	26	1.61
11168748--11168819	35	2.1	35	84	2	92	52	19	8	19	1.70
11169062--11169125	28	2.2	29	78	8	69	18	18	9	53	1.71
11186642--11186694	27	2.0	27	96	0	97	16	16	0	66	1.26
11198468--11198618	49	3.1	49	95	1	259	15	21	58	4	1.54
11211348--11211390	21	2.0	22	86	4	61	44	0	0	55	0.99
11211588--11211634	23	2.1	23	88	11	71	46	4	0	48	1.21
11212693--11212788	33	2.9	32	85	4	111	64	1	5	29	1.22
11212969--11213024	15	3.7	15	85	4	78	35	8	5	50	1.57
11218377--11218419	20	2.1	21	86	4	61	23	16	16	44	1.86
11218376--11218423	21	2.3	22	82	10	64	22	16	14	45	1.84
11221314--11221374	32	2.0	32	87	6	90	39	9	9	40	1.72
11222124--11222178	27	2.0	29	82	7	69	30	12	9	47	1.73
11227323--11227382	31	1.9	31	93	0	102	28	21	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11233504--11233541	17	2.2	17	95	0	67	31	28	10	28	1.90
11234136--11234197	30	2.1	30	100	0	124	45	9	22	22	1.81
11243289--11243331	19	2.3	19	84	4	61	9	9	0	81	0.88
11243289--11243326	18	2.2	18	85	4	51	7	10	0	81	0.87
11250683--11250718	2	18.5	2	88	5	56	50	0	0	50	1.00
11253951--11253977	2	13.5	2	100	0	54	48	0	0	51	1.00
11275210--11275467	128	2.0	129	91	0	419	28	13	22	35	1.92
11284423--11284467	22	2.0	22	95	0	81	8	6	37	46	1.61
11290460--11290499	4	10.0	4	100	0	80	25	0	0	75	0.81
11292965--11293121	79	1.9	83	86	10	225	35	8	15	41	1.77
11303264--11303295	2	16.0	2	100	0	64	50	0	0	50	1.00
11317623--11317692	30	2.4	29	81	15	83	40	7	18	34	1.78
11318783--11318843	28	2.2	28	93	0	104	31	14	24	29	1.95
11320445--11320475	2	15.5	2	100	0	62	51	0	0	48	1.00
11325248--11325308	31	2.0	31	87	6	88	31	27	3	37	1.73
11339428--11339475	24	2.0	24	84	8	62	50	0	8	41	1.33
11342408--11342445	14	2.8	13	88	7	58	36	0	63	0	0.95
11342572--11342631	25	2.3	26	82	5	68	16	6	5	71	1.25
11344299--11344327	7	4.1	7	100	0	58	13	27	31	27	1.94
11351450--11351486	19	2.0	20	84	10	51	51	8	5	35	1.55
11359592--11359657	30	2.3	30	87	10	93	34	0	1	63	1.04
11376113--11376291	42	4.3	42	88	0	268	34	12	40	12	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11376113--11376296	21	8.8	21	73	0	143	35	11	39	13	1.81
11376801--11376950	81	1.9	81	86	0	219	32	25	23	18	1.97
11380453--11380492	3	13.3	3	100	0	80	32	0	0	67	0.91
11386660--11386791	27	4.9	27	90	1	176	12	30	29	28	1.93
11386933--11387011	27	2.9	27	75	3	79	17	34	24	24	1.96
11387020--11387079	26	2.3	26	80	5	77	28	33	15	23	1.94
11393673--11394075	200	2.0	199	90	0	626	40	16	10	32	1.83
11398408--11398463	25	2.2	26	84	15	73	39	16	3	41	1.65
11398422--11398473	25	2.1	25	82	13	63	42	13	7	36	1.73
11399975--11400012	15	2.4	16	82	8	51	68	0	2	28	1.03
11405770--11405835	29	2.3	29	82	7	82	27	6	3	63	1.32
11407902--11407976	31	2.6	28	78	15	89	61	2	0	36	1.10
11407902--11407978	29	2.6	29	77	20	88	61	2	0	36	1.10
11416832--11417101	134	2.0	134	100	0	540	32	13	17	35	1.89
11417094--11417134	2	20.5	2	100	0	82	51	0	0	48	1.00
11417627--11417655	3	10.0	3	92	7	51	68	0	31	0	0.89
11419283--11419314	2	16.0	2	100	0	64	50	0	0	50	1.00
11420961--11421012	5	10.4	5	100	0	104	38	0	61	0	0.96
11427655--11427963	155	2.0	155	89	1	467	43	9	19	26	1.82
11445744--11445768	3	8.3	3	100	0	50	36	0	32	32	1.58
11455462--11455488	2	13.5	2	100	0	54	51	0	0	48	1.00
11459555--11459586	2	16.0	2	100	0	64	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11470768--11470792	2	12.5	2	100	0	50	52	0	48	0	1.00
11479132--11479158	2	13.5	2	100	0	54	48	0	51	0	1.00
11486174--11486206	17	1.9	17	93	0	57	51	6	33	9	1.58
11487478--11487521	15	2.9	15	82	0	52	31	11	25	31	1.91
11487737--11487819	33	2.4	33	84	6	94	30	3	0	66	1.09
11487710--11487848	74	1.9	73	80	7	165	30	6	1	61	1.30
11488673--11488725	21	2.5	21	84	6	63	49	1	0	49	1.12
11488689--11488729	21	2.0	20	90	9	66	36	2	0	60	1.10
11489278--11489307	15	1.9	16	93	6	53	16	0	0	83	0.65
11491761--11491815	28	2.0	28	88	0	83	27	9	36	27	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31