genome.fa.s2.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397255.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_44.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14367614

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   

This is table  30  of  31  ( 3649 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13691710--13691876	28	5.7	28	76	10	147	40	7	11	41	1.69
13691761--13691830	31	2.3	31	82	7	81	44	7	10	38	1.65
13691707--13691865	59	2.7	58	85	4	205	40	7	11	40	1.69
13692022--13692054	17	1.9	17	88	11	50	39	3	15	42	1.62
13695261--13695302	19	2.1	21	79	16	54	54	0	0	45	0.99
13710188--13710237	25	2.0	25	88	0	73	36	16	14	34	1.88
13722070--13722115	22	2.0	22	83	4	56	30	0	23	45	1.53
13746318--13746400	40	2.1	40	82	10	100	40	21	19	18	1.91
13753739--13753893	73	2.1	73	82	4	188	23	21	14	40	1.91
13775063--13775092	2	15.0	2	100	0	60	0	0	50	50	1.00
13776960--13776984	13	1.9	13	100	0	50	48	0	0	52	1.00
13784594--13784618	7	3.6	7	100	0	50	12	44	28	16	1.83
13785619--13785650	12	2.4	14	90	10	50	40	0	0	59	0.97
13787482--13787725	27	9.4	27	75	8	150	36	7	13	42	1.72
13787749--13787840	27	3.4	27	80	4	96	39	4	14	42	1.65
13791671--13791728	27	2.2	27	90	3	91	50	20	5	24	1.69
13791358--13792059	357	1.9	359	93	1	1192	41	14	18	25	1.89
13796006--13796332	167	2.0	166	91	0	537	31	11	19	37	1.88
13797639--13797684	25	1.9	24	83	16	60	30	10	4	54	1.55
13798163--13798313	28	5.3	27	76	13	126	39	9	7	42	1.68
13798141--13798313	57	3.0	55	79	8	193	38	10	8	42	1.69
13798141--13798307	29	5.8	28	77	15	162	39	10	7	41	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13803309--13803395	37	2.4	37	82	3	104	33	19	25	21	1.97
13804921--13805057	71	1.9	72	86	1	195	23	17	15	43	1.87
13811483--13811509	4	6.8	4	100	0	54	25	0	22	51	1.48
13813790--13813831	22	1.9	22	90	0	66	61	16	7	14	1.53
13819766--13819895	67	2.0	67	87	4	192	36	23	12	27	1.91
13819777--13819888	32	3.3	34	77	6	120	35	24	13	26	1.92
13820302--13820465	74	2.2	74	87	0	238	23	16	16	43	1.87
13821103--13821135	15	2.2	15	100	0	66	60	6	12	21	1.53
13823245--13823293	20	2.5	20	82	0	53	22	0	8	69	1.14
13823264--13823322	18	3.1	18	79	13	57	20	0	5	74	1.00
13823264--13823303	20	2.0	20	85	5	53	20	0	5	75	0.99
13823880--13823936	29	2.0	29	100	0	114	42	14	3	40	1.62
13841821--13841860	11	3.5	11	83	16	55	72	2	25	0	0.97
13841818--13841861	16	2.9	15	90	6	63	72	2	25	0	0.96
13850647--13850690	19	2.4	18	85	7	61	63	0	34	2	1.07
13853025--13853106	8	9.8	8	71	17	51	60	1	34	3	1.22
13853032--13853078	4	12.0	4	78	13	53	68	0	29	2	1.02
13853045--13853101	23	2.5	24	85	5	73	64	0	33	1	1.04
13853050--13853101	15	3.4	15	86	5	68	63	0	34	1	1.06
13861558--13861753	80	2.5	80	86	3	261	33	9	23	33	1.87
13864892--13864935	21	2.0	22	86	4	63	29	0	6	63	1.20
13869105--13869276	65	2.6	64	82	9	186	31	11	22	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13869170--13869203	17	2.0	17	88	0	50	17	11	26	44	1.83
13870654--13870683	11	2.8	11	95	5	53	46	0	26	26	1.53
13882982--13883020	19	2.0	20	85	14	55	61	0	23	15	1.33
13902145--13902250	35	3.0	36	84	2	151	32	6	16	45	1.73
13910909--13910941	13	2.4	14	90	5	50	72	15	0	12	1.12
13916109--13916138	15	2.1	15	93	6	53	86	0	13	0	0.57
13916953--13916981	2	15.0	2	92	7	51	51	0	0	48	1.00
13919183--13919279	34	2.8	35	81	7	110	34	15	22	27	1.94
13925105--13925151	23	2.0	23	83	0	58	27	17	27	27	1.97
13930379--13930417	20	2.0	20	90	5	62	46	2	0	51	1.14
13931832--13932024	104	1.9	104	85	2	271	20	13	13	52	1.74
13933938--13933999	8	7.7	9	84	15	59	0	30	1	67	1.00
13933902--13934001	16	6.4	16	68	14	57	1	35	2	62	1.14
13933945--13933994	4	12.8	4	82	4	66	0	30	0	70	0.88
13934427--13934460	16	2.1	16	88	0	50	23	17	5	52	1.66
13935442--13935596	77	2.0	77	100	0	310	27	18	12	41	1.86
13958784--13958845	31	2.0	31	87	0	88	45	9	12	32	1.75
13974971--13975061	28	3.2	28	75	3	94	28	26	16	28	1.97
13975963--13976454	242	2.0	242	86	4	690	34	14	17	33	1.90
13990769--13991418	249	2.6	248	81	5	731	49	7	9	33	1.63
13991526--13991582	19	2.9	19	79	10	62	59	3	0	36	1.14
13991773--13992707	251	3.8	249	82	6	984	35	9	6	48	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13992440--13992480	20	2.0	21	85	9	57	31	9	2	56	1.45
13992536--13992908	184	1.9	196	83	8	491	35	10	7	46	1.68
13992720--13993391	249	2.7	248	75	5	637	33	7	8	49	1.62
13993271--13993305	17	2.0	18	88	5	54	37	0	0	62	0.95
13997051--13997088	19	2.0	19	90	10	60	42	21	18	18	1.90
13999667--13999705	19	2.1	19	85	0	51	35	20	28	15	1.93
14000083--14000115	15	2.1	17	88	11	52	72	6	0	21	1.05
14003967--14003991	6	4.2	6	100	0	50	32	0	16	52	1.44
14004076--14004114	9	4.8	9	79	20	50	61	0	12	25	1.31
14004076--14004114	15	2.4	16	87	12	62	61	0	12	25	1.31
14004378--14004484	52	2.0	53	82	13	132	10	18	23	47	1.79
14008601--14008631	12	2.6	12	100	0	62	6	9	22	61	1.50
14010912--14011051	49	2.9	49	84	2	156	26	10	26	36	1.89
14017090--14017127	17	2.2	18	86	9	53	13	0	21	65	1.26
14021492--14021520	14	2.0	15	93	6	51	37	0	6	55	1.27
14027517--14027541	6	4.2	6	100	0	50	64	0	0	36	0.94
14048233--14048326	36	2.6	37	78	10	104	34	21	13	30	1.92
14051520--14051571	26	2.0	26	100	0	104	23	19	23	34	1.96
14063983--14064058	26	2.9	26	100	0	152	23	2	35	38	1.69
14074203--14074368	83	2.0	83	93	0	287	27	20	13	38	1.90
14081767--14081816	25	2.0	25	88	0	73	40	14	16	30	1.87
14083439--14083537	28	3.6	27	87	2	126	28	13	29	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14091892--14091943	20	2.7	20	80	11	63	46	1	5	46	1.38
14096298--14096343	22	2.0	22	84	12	58	26	36	4	32	1.76
14096624--14096676	24	2.3	23	83	6	63	0	41	0	58	0.98
14106175--14106222	21	2.4	19	80	13	51	25	4	14	56	1.56
14109882--14109937	24	2.5	22	82	5	67	23	8	32	35	1.86
14113072--14113184	59	1.9	59	83	0	145	23	9	27	39	1.86
14113270--14113340	23	3.1	22	72	11	63	25	4	25	45	1.71
14113326--14113402	22	3.5	22	67	3	64	23	9	23	44	1.82
14113321--14113407	45	1.9	45	92	0	147	24	8	24	43	1.80
14114320--14114370	21	2.4	21	87	9	77	25	23	23	27	2.00
14115261--14115342	22	3.7	23	75	12	73	24	7	19	48	1.74
14115156--14115325	45	3.8	45	74	5	139	24	9	24	42	1.84
14115229--14115325	23	4.3	22	73	10	79	22	10	24	42	1.85
14115140--14115331	90	2.1	89	81	2	215	25	9	25	40	1.85
14115224--14115338	45	2.6	45	82	0	140	21	8	24	45	1.80
14118784--14118874	43	2.1	43	85	0	119	25	24	19	30	1.98
14118870--14118926	22	2.6	22	86	5	80	21	15	19	43	1.87
14125482--14125538	22	2.6	22	88	0	78	33	26	17	22	1.96
14125436--14125560	60	2.1	60	84	0	160	36	24	15	24	1.93
14125534--14125612	37	2.1	37	88	0	113	40	25	10	24	1.86
14125636--14125712	36	2.1	36	82	4	91	38	27	12	20	1.89
14125690--14125734	22	2.0	22	86	0	63	44	24	11	20	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14127023--14127077	22	2.4	23	78	6	58	43	3	0	52	1.18
14148231--14148270	18	2.2	18	86	0	53	50	15	5	30	1.65
14154337--14154393	28	2.0	28	93	0	96	38	14	15	31	1.87
14169592--14169647	15	3.7	15	83	6	69	0	30	1	67	1.01
14179845--14179869	2	12.5	2	100	0	50	0	52	0	48	1.00
14183653--14184077	234	1.8	234	87	3	640	34	11	5	48	1.63
14184307--14184350	23	1.9	23	81	9	54	43	4	0	52	1.22
14184499--14184536	19	2.1	18	85	9	51	31	5	2	60	1.33
14185595--14186052	248	1.8	248	84	3	634	34	10	4	49	1.58
14185595--14186162	249	2.3	249	81	4	691	33	11	4	48	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31