genome.fa.s2.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397255.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_44.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14367614

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   

This is table  15  of  31  ( 3649 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7613927--7613996	15	4.3	15	71	16	50	70	0	30	0	0.88
7613931--7613997	35	1.9	34	88	8	100	68	0	31	0	0.90
7613945--7613996	27	1.9	27	84	7	70	69	0	30	0	0.89
7614033--7614103	4	17.5	4	75	13	65	73	0	26	0	0.84
7614528--7614564	17	2.1	18	90	5	58	83	2	13	0	0.74
7616375--7616408	15	2.3	15	89	0	50	8	11	70	8	1.34
7616383--7616443	24	2.5	24	81	0	68	9	9	68	11	1.39
7625311--7625341	16	2.0	16	93	6	55	29	0	0	70	0.87
7638435--7638463	3	9.7	3	100	0	58	68	0	0	31	0.89
7638915--7638944	2	15.0	2	92	0	51	50	0	3	46	1.18
7644329--7644395	35	1.9	35	90	0	107	38	16	13	31	1.87
7647199--7647267	29	2.7	26	78	13	72	39	15	21	23	1.92
7647208--7647268	29	2.1	29	84	0	77	40	16	19	22	1.90
7647229--7647336	57	1.9	57	96	0	198	35	13	19	31	1.91
7647839--7647900	21	3.3	21	66	29	66	25	16	6	51	1.68
7647836--7647905	35	2.0	35	100	0	140	25	17	5	51	1.67
7648929--7648969	21	2.0	21	85	0	55	78	7	4	9	1.10
7650017--7650057	19	2.2	18	87	12	57	34	0	7	58	1.26
7653318--7653345	12	2.3	12	100	0	56	85	0	14	0	0.59
7659176--7659236	18	3.2	19	79	13	72	67	0	1	31	1.01
7674198--7674304	57	1.9	56	86	1	151	32	20	20	26	1.97
7683312--7683340	2	15.0	2	92	7	51	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7683467--7683498	14	2.1	16	88	11	50	56	0	0	43	0.99
7683468--7683500	17	2.0	17	88	5	50	54	0	0	45	0.99
7683827--7683874	18	2.7	18	84	9	55	47	0	0	52	1.00
7683823--7683894	24	2.7	26	75	20	78	48	1	0	50	1.09
7683840--7683874	17	2.1	17	89	10	54	48	0	0	51	1.00
7683860--7683912	20	2.7	20	82	5	63	50	3	0	45	1.19
7702593--7702638	13	3.6	12	85	11	56	84	13	0	2	0.71
7715729--7715762	2	17.0	2	100	0	68	50	0	0	50	1.00
7728681--7728717	15	2.4	16	82	13	51	59	0	0	40	0.97
7729849--7729895	13	3.3	14	79	8	51	27	0	0	72	0.85
7732233--7732262	6	5.0	6	100	0	60	16	50	16	16	1.79
7736054--7736100	23	2.0	23	100	0	94	27	21	17	34	1.95
7739664--7739716	9	5.7	10	78	17	51	54	0	0	45	0.99
7739667--7739716	18	2.8	18	81	6	57	56	0	0	44	0.99
7740782--7740904	42	2.9	42	91	0	192	43	8	16	32	1.77
7740925--7740985	29	2.1	29	82	11	72	50	6	11	31	1.64
7741096--7741335	121	2.0	120	82	4	295	48	15	8	27	1.74
7745766--7745834	25	2.8	25	86	4	86	63	1	7	27	1.29
7745812--7745859	20	2.3	21	82	7	62	64	0	12	22	1.27
7745814--7745865	20	2.7	19	82	5	59	59	0	13	26	1.34
7750981--7751024	19	2.2	21	92	8	74	47	2	25	25	1.63
7751654--7751699	21	2.2	21	100	0	92	60	13	21	4	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7752540--7753929	144	9.7	144	80	5	1410	29	20	12	37	1.90
7752540--7753929	288	4.8	288	87	2	1695	29	20	12	37	1.90
7752540--7753912	432	3.2	428	82	4	1612	29	20	12	37	1.90
7757395--7757427	16	2.0	17	88	5	50	21	12	0	66	1.23
7757980--7758006	2	13.5	2	100	0	54	48	0	0	51	1.00
7759004--7759062	28	2.1	29	84	9	77	25	8	3	62	1.39
7759611--7759644	13	2.6	13	95	0	59	23	0	0	76	0.79
7761856--7761901	4	11.8	4	78	21	53	28	0	0	71	0.86
7761853--7761899	14	3.4	14	82	14	62	29	0	0	70	0.88
7761856--7761901	18	2.6	18	80	16	60	28	0	0	71	0.86
7762019--7762065	21	2.2	21	88	0	67	23	2	2	72	1.06
7762501--7762561	29	2.1	29	100	0	122	18	3	6	72	1.21
7762784--7762846	27	2.3	27	100	0	126	28	23	20	26	1.99
7762864--7762901	16	2.3	16	90	4	58	63	0	2	34	1.09
7764796--7764832	16	2.2	17	90	4	58	83	0	10	5	0.79
7767642--7767824	94	1.9	94	80	8	212	51	6	7	34	1.55
7772632--7773999	144	9.7	142	83	7	1574	30	21	11	35	1.90
7772629--7773999	288	4.8	284	87	5	1736	30	21	11	36	1.90
7776417--7776449	12	2.8	12	100	0	66	60	9	21	9	1.54
7780306--7780350	21	2.3	21	85	11	60	20	13	0	66	1.24
7783661--7783761	48	2.1	48	81	3	114	47	4	4	42	1.46
7796627--7796682	30	1.9	28	85	7	76	51	10	5	32	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7813435--7813476	23	1.9	21	100	0	66	16	11	16	54	1.70
7822255--7822302	20	2.4	20	100	0	96	25	35	14	25	1.94
7822294--7822343	21	2.4	21	83	6	66	30	30	14	26	1.94
7827606--7827642	17	2.1	18	90	5	58	48	2	0	48	1.15
7833589--7833613	5	5.0	5	100	0	50	80	0	20	0	0.72
7835610--7835636	2	13.5	2	100	0	54	51	0	0	48	1.00
7844177--7844237	19	3.3	19	65	17	56	63	14	3	18	1.43
7848501--7848531	2	15.5	2	100	0	62	51	0	0	48	1.00
7852387--7852445	21	3.0	20	80	11	59	66	8	0	25	1.20
7854673--7854716	21	2.2	20	84	11	56	2	29	11	56	1.46
7856430--7856469	19	2.0	20	90	4	64	55	27	2	15	1.53
7857898--7857953	9	6.7	9	73	20	50	57	0	0	42	0.99
7867511--7867559	22	2.2	22	96	0	89	32	32	30	4	1.77
7873155--7873183	2	14.5	2	100	0	58	48	0	0	51	1.00
7884473--7884499	2	13.5	2	100	0	54	51	0	0	48	1.00
7885155--7885224	21	3.6	21	78	18	80	30	0	0	70	0.88
7885161--7885214	15	3.4	15	78	14	63	33	0	0	66	0.92
7885153--7885226	26	2.9	25	74	9	69	28	0	0	71	0.86
7885402--7885483	16	4.8	16	69	24	60	40	1	2	56	1.20
7885394--7885448	22	2.4	24	77	20	64	40	0	1	58	1.09
7885402--7885511	14	7.2	16	70	22	51	44	0	1	52	1.17
7885409--7885478	13	5.3	13	71	21	65	40	1	2	55	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7885395--7885490	13	7.0	13	71	16	52	40	1	3	55	1.23
7899572--7899627	28	2.0	29	85	3	78	48	1	1	48	1.22
7911160--7911236	31	2.5	31	82	4	93	54	5	7	32	1.51
7912062--7912142	35	2.3	35	84	0	99	29	25	12	32	1.92
7912574--7912630	22	2.6	22	100	0	114	36	19	8	35	1.83
7924443--7924468	13	2.0	13	100	0	52	46	7	23	23	1.78
7925036--7925085	23	2.2	23	96	0	91	16	20	10	54	1.70
7927807--7927882	38	2.0	38	100	0	152	39	5	7	47	1.55
7931397--7931422	2	13.0	2	100	0	52	50	0	0	50	1.00
7943258--7943282	2	12.5	2	100	0	50	48	0	0	52	1.00
7943301--7943330	4	7.5	4	92	0	51	26	3	23	46	1.68
7952313--7952352	21	1.9	22	85	10	57	27	22	0	50	1.50
7968398--7968429	17	1.9	16	93	6	55	53	12	25	9	1.68
7989780--7989826	23	2.0	23	83	8	58	40	4	12	42	1.63
7994227--7994265	19	2.1	19	100	0	78	25	5	33	35	1.78
7995747--7995803	2	28.5	2	89	0	87	0	56	0	43	0.99
8001988--8002029	17	2.7	15	88	7	57	47	0	2	50	1.14
8003770--8004039	136	2.0	139	82	4	332	40	3	10	45	1.56
8003949--8004106	75	2.1	75	81	8	180	39	2	8	48	1.48
8005653--8005688	2	18.0	2	100	0	72	50	0	0	50	1.00
8006512--8006575	22	2.9	22	83	4	76	28	12	14	45	1.81
8006549--8006644	45	2.2	45	80	1	113	29	10	18	41	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8006502--8006642	67	2.1	66	78	1	147	27	10	19	42	1.84
8014023--8014053	2	15.5	2	100	0	62	48	0	0	51	1.00
8015380--8015512	44	3.0	44	74	9	110	19	39	13	27	1.89
8015379--8015648	146	1.9	140	85	9	375	18	38	14	28	1.90
8015576--8015648	38	1.9	38	85	0	101	16	38	13	31	1.88
8017302--8017355	28	1.9	28	85	7	74	25	1	9	62	1.35
8025103--8025136	1	34.0	1	93	0	59	2	0	97	0	0.19
8025100--8025136	18	2.1	18	100	0	74	5	0	94	0	0.30
8025104--8025136	17	1.9	17	100	0	66	3	0	96	0	0.20
8030401--8030443	13	3.3	13	83	6	52	39	0	4	55	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31