genome.fa.s7748.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007748.1 Hibiscus syriacus cultivar Beakdansim tig00110013_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4568288

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  15  of  24  ( 2778 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2881850--2881895	15	3.1	14	82	17	58	82	2	2	13	0.85
2881875--2881972	41	2.4	39	82	14	126	72	3	9	15	1.22
2881864--2881973	40	2.9	38	80	17	113	72	2	8	16	1.20
2881977--2882015	17	2.4	16	78	4	51	66	2	2	28	1.18
2883113--2883202	30	3.0	31	71	21	82	54	6	2	36	1.39
2886295--2886380	35	2.5	35	84	0	100	40	20	1	37	1.61
2886349--2886391	21	2.0	21	100	0	86	46	13	0	39	1.44
2886514--2886547	16	2.0	18	88	11	54	26	2	5	64	1.30
2887015--2887261	130	1.9	130	93	0	422	37	12	14	35	1.84
2891976--2892032	28	2.0	28	100	0	114	33	3	24	38	1.73
2895010--2895058	23	2.1	23	85	7	64	32	2	8	57	1.40
2895983--2896022	21	1.9	21	94	0	71	32	30	15	22	1.94
2896036--2896105	19	3.7	19	90	5	108	22	35	15	25	1.94
2896003--2896166	83	2.0	83	86	3	231	31	26	15	26	1.96
2896059--2896211	64	2.4	63	82	8	184	28	27	15	28	1.96
2896183--2896231	19	2.6	19	84	9	57	24	30	18	26	1.98
2904215--2904254	21	1.9	21	94	0	71	32	30	15	22	1.94
2904280--2904318	19	2.1	19	95	0	69	20	38	15	25	1.92
2904215--2904360	64	2.2	66	84	8	183	32	25	15	26	1.95
2904291--2904408	45	2.6	46	79	6	141	28	24	15	31	1.95
2904377--2904425	19	2.6	19	84	9	57	24	30	18	26	1.98
2905600--2905758	82	1.9	82	90	0	255	40	1	9	48	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2906279--2906332	28	1.9	28	100	0	108	29	22	11	37	1.89
2918016--2918056	22	1.9	22	85	5	57	56	2	4	36	1.34
2919507--2919537	4	7.8	4	100	0	62	25	0	0	74	0.82
2920349--2920374	11	2.4	11	100	0	52	38	15	0	46	1.46
2920375--2920421	21	2.2	22	85	11	62	38	4	0	57	1.18
2920802--2920841	20	2.0	20	90	4	64	37	0	7	55	1.29
2923700--2923739	20	2.0	20	90	4	64	37	0	7	55	1.29
2923925--2923969	20	2.2	20	92	0	72	28	40	20	11	1.86
2925487--2925527	22	1.9	22	85	5	57	56	2	14	26	1.51
2926467--2926575	21	5.2	21	97	0	209	28	10	26	34	1.89
2931837--2931903	21	3.2	21	100	0	134	28	10	26	34	1.90
2931920--2931962	22	2.0	22	85	0	59	23	25	25	25	2.00
2934352--2934653	136	2.2	137	81	6	340	27	18	30	23	1.98
2934352--2934716	136	2.7	136	79	5	306	28	18	29	23	1.98
2940229--2940288	32	2.0	30	87	9	86	48	3	0	48	1.18
2940822--2940978	79	2.0	79	100	0	314	28	34	15	22	1.94
2954587--2954636	3	16.7	3	91	0	82	36	0	2	62	1.07
2954587--2954651	12	5.4	12	88	5	78	35	1	3	60	1.22
2954663--2954714	12	4.5	11	88	11	70	55	0	0	44	0.99
2954654--2954718	14	4.6	15	86	7	75	60	0	0	40	0.97
2954652--2954707	8	7.2	8	90	8	62	58	0	0	41	0.98
2954669--2954711	2	21.5	2	95	0	77	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2960083--2960114	15	2.1	15	94	0	55	25	18	9	46	1.79
2968275--2969200	93	9.9	93	96	0	1611	29	13	20	36	1.91
2970072--2970136	20	3.3	20	68	12	53	49	9	21	20	1.76
2970040--2970136	40	2.5	40	86	11	130	47	10	21	20	1.80
2970080--2970144	20	3.3	20	66	12	53	43	10	18	27	1.83
2970203--2970247	24	1.9	23	82	13	56	51	6	24	17	1.70
2970078--2970720	113	5.7	114	84	5	797	38	13	18	29	1.89
2970079--2970826	229	3.3	225	84	6	891	39	13	18	28	1.89
2970079--2970804	342	2.1	332	80	11	859	39	14	18	28	1.89
2970636--2970931	124	2.4	124	85	3	377	43	15	18	22	1.87
2971146--2971185	2	20.5	2	94	5	73	52	0	0	47	1.00
2973752--2973823	36	2.0	36	83	8	92	48	1	4	45	1.30
2973969--2974006	20	1.9	20	88	0	58	21	26	10	42	1.85
2978353--2978456	32	3.3	32	80	9	108	25	43	15	15	1.86
2978411--2978493	29	2.9	29	83	0	94	20	37	25	16	1.93
2978948--2978988	22	1.9	21	85	5	55	26	0	19	53	1.45
2979289--2979335	16	3.0	16	84	9	53	29	0	10	59	1.31
2979310--2979340	15	2.1	14	94	5	53	38	0	6	54	1.26
2981549--2981596	14	3.6	14	81	16	66	47	16	0	35	1.47
2981548--2981596	25	2.0	25	95	0	89	46	16	0	36	1.47
2981564--2981815	60	4.3	60	93	5	437	46	13	0	40	1.43
2981679--2981703	10	2.5	10	100	0	50	40	20	0	40	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2981709--2981794	21	4.3	21	67	16	65	45	11	0	43	1.40
2981564--2982149	117	5.1	116	74	15	553	45	12	1	41	1.51
2981564--2981815	59	4.3	56	90	7	317	46	13	0	40	1.43
2981882--2981929	14	3.6	14	78	16	57	50	14	0	35	1.44
2981881--2981929	25	2.0	25	91	0	80	48	14	0	36	1.44
2981897--2982149	60	4.2	60	91	1	393	46	11	0	42	1.39
2982977--2983035	16	3.4	16	72	17	55	50	11	0	37	1.39
2983309--2983370	28	2.1	30	91	5	101	56	12	0	30	1.37
2983795--2983861	23	2.9	23	100	0	134	26	26	23	22	2.00
2983877--2983939	22	2.9	22	95	0	108	22	14	36	26	1.92
2983948--2984059	29	3.9	29	89	0	170	16	25	39	19	1.91
2983948--2984059	58	1.9	58	94	0	197	16	25	39	19	1.91
2984042--2984120	33	2.4	33	95	2	142	10	15	48	26	1.76
2988446--2988472	14	1.9	14	100	0	54	37	18	22	22	1.95
2988449--2988495	22	2.0	23	88	8	69	40	21	17	21	1.91
2989118--2989246	32	4.1	32	88	5	174	33	24	15	27	1.95
2991423--2991447	8	3.1	8	100	0	50	16	24	24	36	1.94
2999297--2999457	87	1.9	85	90	2	259	42	10	13	34	1.78
2999593--3000473	182	4.9	182	93	1	1481	28	17	12	41	1.85
3002135--3002482	183	1.9	183	93	1	608	34	16	13	36	1.87
3003763--3003807	3	15.0	3	80	0	54	24	33	4	37	1.76
3003767--3003824	12	4.8	12	89	0	80	20	32	6	39	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3003767--3003824	6	9.7	6	84	0	62	20	32	6	39	1.79
3005327--3005914	200	2.9	200	97	0	1113	30	18	14	36	1.91
3006149--3006197	19	2.6	19	93	6	82	57	10	2	30	1.43
3007755--3007809	15	3.5	15	73	22	58	5	41	0	52	1.24
3007745--3007826	33	2.5	33	94	2	139	4	43	0	51	1.23
3008013--3008078	33	2.0	33	87	0	96	22	43	0	33	1.54
3008115--3008155	21	2.0	21	85	0	55	19	24	12	43	1.85
3010348--3010390	20	2.3	18	85	14	61	20	16	11	51	1.75
3010353--3010399	20	2.4	19	82	10	67	19	17	10	53	1.72
3010320--3010792	181	2.6	182	88	1	664	26	16	13	44	1.84
3014670--3014703	2	17.0	2	100	0	68	50	0	50	0	1.00
3020720--3020772	20	2.7	20	84	0	70	18	24	24	32	1.97
3020828--3020878	21	2.4	21	100	0	102	23	31	23	21	1.98
3021159--3021228	34	2.1	33	84	5	88	35	15	25	22	1.94
3024217--3024269	20	2.7	20	84	0	70	20	30	20	28	1.98
3028533--3028565	15	2.1	16	94	5	59	51	0	6	42	1.26
3035298--3035341	21	2.1	21	82	0	52	9	38	15	36	1.80
3035636--3035662	14	1.9	14	100	0	54	7	0	25	66	1.17
3035984--3036144	65	2.5	65	91	2	252	31	22	18	27	1.97
3038230--3038262	15	2.1	16	94	5	59	51	0	6	42	1.26
3044919--3045375	233	2.0	233	92	0	763	34	25	13	26	1.93
3048265--3048388	30	4.0	30	80	8	142	27	17	20	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3048266--3048389	62	2.0	63	84	7	164	27	17	20	34	1.95
3048385--3048445	22	2.8	22	92	0	104	26	24	26	22	2.00
3052710--3052829	31	3.9	31	81	11	131	27	17	20	35	1.95
3052710--3052829	32	3.8	32	80	7	88	27	17	20	35	1.95
3052814--3052867	22	2.5	22	84	0	63	25	24	24	25	2.00
3055151--3055192	22	1.9	22	85	0	57	30	14	4	50	1.63
3055214--3055257	21	2.1	21	100	0	88	9	38	9	43	1.68
3064358--3064427	31	2.3	30	80	4	77	27	11	12	48	1.75
3071207--3071266	26	2.3	27	94	2	104	15	13	15	56	1.67
3076341--3076394	26	2.1	26	85	0	72	42	20	7	29	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24