genome.fa.s7748.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007748.1 Hibiscus syriacus cultivar Beakdansim tig00110013_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4568288

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  5  of  24  ( 2778 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
746954--747018	21	3.0	21	86	2	94	29	10	32	27	1.90
748259--748371	22	5.4	22	76	10	94	19	17	22	40	1.91
748280--748327	19	2.5	19	96	0	87	18	18	18	43	1.88
748260--748362	19	5.1	19	77	10	62	19	16	22	41	1.90
749092--749173	22	3.7	22	93	3	130	35	24	23	17	1.95
749114--749270	20	7.6	20	78	4	118	40	21	21	15	1.91
749156--749295	61	2.3	61	91	0	226	41	22	18	17	1.90
749639--749668	13	2.3	13	94	0	51	30	0	16	53	1.44
750112--750175	19	3.2	19	76	10	65	46	0	1	51	1.10
752009--752046	20	1.9	20	88	0	58	21	26	10	42	1.85
755998--756216	44	5.0	43	70	18	159	51	5	18	25	1.66
756012--756216	86	2.4	88	79	8	217	52	4	17	25	1.64
756035--756257	42	5.2	43	76	13	167	49	5	19	25	1.69
755998--756257	129	2.0	130	81	9	300	50	5	19	25	1.68
755998--756288	129	2.2	128	78	11	281	49	5	18	26	1.69
756688--756930	124	2.0	124	100	0	486	30	11	12	45	1.78
764351--764401	19	2.7	19	100	0	102	25	25	27	21	1.99
764371--764531	64	2.5	62	81	6	187	33	18	21	26	1.96
765023--765057	18	1.9	18	88	11	54	54	5	17	22	1.64
765947--766259	149	2.1	148	93	3	533	26	17	21	34	1.96
766227--766271	23	2.0	23	90	0	72	22	26	26	24	2.00
769402--769562	64	2.5	63	85	7	200	32	18	21	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
770054--770088	18	1.9	18	88	11	54	54	5	17	22	1.64
770331--770372	2	21.0	2	95	0	75	50	0	2	47	1.14
771136--771165	15	2.0	15	93	0	51	23	23	26	26	2.00
773928--773989	20	3.2	20	82	13	67	37	16	25	20	1.93
778222--778246	13	1.9	13	100	0	50	16	0	8	76	1.02
785607--785659	2	26.5	2	100	0	106	50	0	0	49	1.00
786732--786839	20	5.3	20	86	4	119	24	21	18	36	1.95
787702--787755	24	2.2	24	90	0	81	22	18	18	40	1.91
790265--790319	19	2.8	20	83	2	67	38	21	21	18	1.94
790292--790403	33	3.4	33	93	0	197	46	17	22	13	1.83
790398--790494	19	5.4	19	76	14	89	14	14	22	48	1.80
790433--790559	33	3.8	33	92	2	184	12	19	20	47	1.82
790664--790701	14	2.7	14	91	0	67	44	21	0	34	1.52
792050--792116	21	3.2	21	68	4	55	19	20	35	23	1.95
792587--792633	19	2.5	19	96	0	85	44	25	21	8	1.80
792587--792669	19	4.6	17	78	15	64	44	22	22	9	1.82
792676--792790	19	6.2	19	79	12	123	7	20	21	50	1.73
792676--792790	33	3.1	38	79	13	123	7	20	21	50	1.73
792676--792790	52	2.1	53	85	11	151	7	20	21	50	1.73
792881--793348	94	5.1	94	91	2	725	47	18	12	22	1.82
795058--795113	14	3.6	14	74	21	58	42	23	25	8	1.82
795037--795130	33	2.8	33	93	1	152	43	23	22	10	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
795029--795135	19	6.1	19	69	21	81	43	21	23	11	1.84
795155--795233	20	3.9	21	85	5	85	12	18	16	51	1.75
795764--795841	20	3.9	20	81	8	88	38	17	19	24	1.93
795788--795918	20	6.8	20	80	13	143	26	20	19	32	1.97
795848--795929	41	2.0	41	87	0	119	25	19	19	35	1.95
796162--796193	2	16.0	2	93	0	55	46	0	3	50	1.17
800066--800204	29	4.6	29	73	11	111	35	20	5	38	1.75
801649--801675	13	2.1	13	100	0	54	40	29	14	14	1.86
806740--806901	29	5.7	29	76	10	136	35	24	5	35	1.79
809840--809903	18	3.8	17	78	11	60	81	0	14	4	0.85
809838--809907	16	4.5	15	76	15	63	81	0	14	4	0.84
809835--809911	29	2.7	29	81	2	93	81	0	14	3	0.82
809866--809912	19	2.5	18	89	6	67	89	0	6	4	0.59
809864--809912	10	5.0	10	87	5	73	87	0	8	4	0.65
811400--811518	52	2.3	52	89	0	175	34	19	24	21	1.96
816825--816931	57	1.9	56	84	5	144	29	20	20	28	1.98
816917--816987	19	3.7	19	96	0	133	22	16	29	30	1.96
830975--831003	2	14.5	2	100	0	58	48	0	0	51	1.00
837350--837407	29	2.0	29	96	0	107	43	20	18	17	1.89
841312--841403	23	4.0	23	91	0	139	27	26	27	19	1.99
842606--842631	10	2.6	10	100	0	52	73	0	26	0	0.84
844472--844514	21	2.0	21	86	0	59	23	20	23	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
848418--848498	22	3.7	22	90	3	128	18	28	23	29	1.98
852861--853070	105	2.0	105	82	0	258	39	23	14	22	1.91
854494--854553	22	2.7	22	87	10	95	16	28	23	31	1.96
856953--857114	64	2.5	65	80	5	186	32	18	22	26	1.97
858310--858377	2	34.0	2	100	0	136	50	0	0	50	1.00
858424--858453	2	15.0	2	100	0	60	50	0	0	50	1.00
858792--858859	23	3.0	23	86	0	100	17	26	26	29	1.98
861818--861871	19	2.8	19	85	0	72	44	9	11	35	1.72
861958--862001	21	2.1	21	95	0	79	22	25	25	27	2.00
865635--865871	119	2.0	119	84	4	309	40	10	11	37	1.77
867925--867968	22	2.0	22	100	0	88	31	4	9	54	1.52
887058--887135	37	2.2	36	80	12	92	50	0	0	50	1.00
887136--887167	12	2.6	12	95	5	55	12	21	46	18	1.82
887191--887267	36	2.2	36	88	2	111	16	36	15	31	1.91
900280--900337	30	1.9	30	100	0	116	13	8	44	32	1.75
901052--901087	2	18.0	2	100	0	72	50	0	0	50	1.00
902575--902629	3	19.0	3	79	7	60	67	1	0	30	1.01
902576--902633	28	2.0	29	86	3	82	70	1	0	27	0.97
902591--902631	19	2.1	20	90	4	66	75	2	0	21	0.92
902949--903622	113	6.0	113	91	1	962	28	19	14	37	1.91
910395--910434	20	2.0	20	100	0	80	35	15	10	40	1.80
912438--912593	31	5.0	31	89	1	233	39	23	18	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
915595--915619	10	2.5	10	100	0	50	92	0	0	8	0.40
915613--915700	29	3.1	29	74	12	76	60	1	6	31	1.30
917727--917789	3	21.0	3	83	6	83	65	1	0	33	1.03
922916--922950	4	8.8	4	87	0	52	45	2	0	51	1.16
922916--922950	6	5.8	6	93	0	52	45	2	0	51	1.16
924316--924389	3	25.7	3	78	13	84	63	0	2	33	1.09
924318--924389	33	2.2	33	90	5	110	63	0	2	33	1.08
924449--924473	3	8.3	3	100	0	50	68	32	0	0	0.90
924688--924726	14	2.8	14	84	0	51	35	28	12	23	1.91
929717--929779	19	3.3	19	100	0	126	26	20	31	20	1.98
930323--930355	2	16.5	2	100	0	66	51	0	0	48	1.00
938389--938479	46	2.0	46	93	2	157	27	17	26	28	1.98
940514--940620	41	2.6	42	82	8	141	55	8	5	30	1.53
940653--940708	27	2.1	27	90	6	89	62	1	0	35	1.06
944597--944651	28	2.0	28	85	0	74	40	16	12	30	1.86
945364--945394	16	1.9	16	100	0	62	32	6	0	61	1.21
948666--948709	18	2.4	18	96	0	79	31	18	15	34	1.92
962900--962938	16	2.4	17	86	4	53	53	0	0	46	1.00
964324--964352	4	7.2	4	100	0	58	24	0	0	75	0.80
972736--972913	91	2.0	89	85	6	243	25	20	15	38	1.91
989654--989894	55	4.4	57	77	13	177	34	21	15	28	1.94
989687--990095	55	7.6	56	82	9	363	29	24	16	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
989654--990094	111	4.1	110	80	11	389	30	23	16	28	1.96
989690--990044	166	2.2	162	85	5	464	30	23	16	28	1.97
989741--990109	51	6.9	51	82	10	348	29	25	16	28	1.97
991434--991547	27	4.3	26	74	14	81	5	20	0	73	1.07
991419--991510	27	3.6	24	73	24	71	4	20	1	73	1.06
991454--991549	28	3.6	28	71	21	73	5	21	1	71	1.11
991462--991564	19	5.7	18	73	25	76	4	22	0	71	1.10
1000977--1001065	45	1.9	47	93	4	155	37	23	11	28	1.89
1004090--1004142	21	2.5	21	87	0	79	20	24	18	35	1.95
1004132--1004203	20	3.7	20	94	3	119	40	22	18	19	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24