genome.fa.s7748.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007748.1 Hibiscus syriacus cultivar Beakdansim tig00110013_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4568288

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  3  of  24  ( 2778 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
360686--360728	22	2.0	22	100	0	86	25	9	27	37	1.87
365970--366020	20	2.7	18	82	14	66	17	15	1	64	1.38
370718--370753	19	1.9	20	88	11	58	33	33	0	33	1.58
371607--371744	64	2.2	64	93	0	240	37	23	16	22	1.93
371858--371905	21	2.3	21	88	0	78	27	27	18	27	1.98
375201--375270	35	2.0	34	86	10	97	28	17	28	25	1.97
375975--376007	16	2.1	16	88	11	50	75	0	9	15	1.03
377038--377062	12	2.1	12	100	0	50	16	40	24	20	1.91
388413--388454	20	2.1	20	86	0	57	30	11	21	35	1.90
394276--394344	23	3.0	23	82	0	93	17	21	26	34	1.95
395591--395658	20	3.4	20	95	0	127	52	13	17	16	1.74
396291--396337	20	2.6	18	81	15	60	4	29	2	63	1.25
399856--399963	38	2.9	38	79	6	121	47	10	16	25	1.78
399853--399964	36	3.0	36	75	7	116	45	9	16	27	1.79
400021--400134	43	2.6	44	82	8	126	33	18	19	28	1.95
400018--400147	44	3.0	44	78	6	140	33	17	19	30	1.95
407415--407463	24	2.0	24	84	7	64	16	12	8	63	1.51
412924--412972	24	2.1	23	85	7	64	44	4	16	34	1.66
421556--422415	432	2.0	426	97	2	1607	33	17	5	44	1.71
430834--430875	18	2.3	18	80	8	50	30	14	26	28	1.95
442556--442607	20	2.7	20	79	11	54	76	0	9	13	1.01
442560--442705	15	9.5	15	68	16	59	71	1	6	20	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
442699--442777	15	5.0	15	69	14	61	72	2	6	18	1.18
442560--442774	12	18.7	11	66	19	61	71	1	6	20	1.19
442750--442811	22	2.9	21	75	20	56	74	1	6	17	1.11
443203--443261	19	3.1	18	80	11	64	71	3	0	25	1.02
445127--445923	84	9.5	84	86	0	986	25	18	22	34	1.96
445132--445923	252	3.1	252	88	1	1104	25	18	22	34	1.96
446288--446338	3	17.7	3	88	8	70	35	1	0	62	1.06
446784--446841	29	2.0	29	100	0	116	44	31	13	10	1.78
449905--449966	32	2.0	32	96	3	117	14	14	9	61	1.57
452065--452094	12	2.6	11	90	10	51	73	10	10	6	1.25
453280--453321	4	11.0	4	90	10	70	50	26	0	23	1.50
453673--453794	35	3.4	36	77	5	120	33	13	12	40	1.83
453898--453979	36	2.3	36	78	4	94	36	19	12	31	1.89
453953--454191	105	2.3	102	83	9	290	30	20	11	37	1.88
454137--454255	36	3.4	34	79	6	114	30	20	12	36	1.90
454155--454256	36	2.9	36	82	4	129	33	19	11	35	1.88
454498--454633	57	2.4	56	86	6	193	28	10	16	44	1.81
454498--454633	29	4.8	28	88	4	193	28	10	16	44	1.81
454609--454834	67	3.5	64	84	8	296	30	11	13	43	1.80
454615--454895	67	4.4	64	82	8	207	31	11	13	43	1.80
454935--455158	120	1.9	119	81	8	276	30	14	12	42	1.83
455056--455180	64	2.0	63	88	1	187	31	14	11	43	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
455162--455242	41	2.0	40	87	2	117	32	19	11	37	1.87
455338--455381	15	2.9	15	86	0	61	29	20	6	43	1.78
455815--455896	28	2.9	28	83	3	94	24	12	13	50	1.76
455915--456075	83	1.9	83	85	7	223	24	31	19	24	1.98
455903--456236	129	2.5	132	85	9	468	25	32	17	24	1.97
456081--456291	91	2.3	92	82	2	255	26	32	17	23	1.96
456458--456507	3	16.7	3	89	8	75	34	2	0	64	1.05
456949--457006	29	2.0	29	100	0	116	44	27	13	13	1.82
463538--463744	17	11.9	16	68	22	63	72	1	7	17	1.17
463568--463738	12	13.8	12	66	19	75	73	1	7	17	1.14
463576--463771	44	4.2	46	69	17	129	71	2	8	17	1.20
463655--463741	36	2.4	36	75	12	88	72	2	5	19	1.16
463599--463783	26	6.9	26	70	16	78	72	2	7	17	1.20
464149--464212	24	2.4	27	82	12	80	70	1	4	23	1.15
464249--464281	10	3.7	9	88	11	50	78	0	0	21	0.75
464934--464963	2	15.0	2	100	0	60	50	0	0	50	1.00
467849--467894	22	2.1	22	83	0	56	41	8	28	21	1.83
467940--467995	30	1.9	28	86	13	78	25	1	8	64	1.32
472772--472805	16	2.1	16	88	0	50	50	0	0	50	1.00
472847--472880	16	2.0	18	88	11	54	26	2	5	64	1.30
473370--473404	16	2.2	16	100	0	70	48	25	0	25	1.51
474010--474086	35	2.2	36	90	2	120	35	1	23	40	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
474791--475403	307	2.0	308	97	0	1156	34	9	12	42	1.76
478007--478040	15	2.3	15	94	0	59	47	14	2	35	1.60
479960--480018	10	5.7	10	80	7	64	67	1	6	23	1.24
479960--480006	21	2.2	21	85	7	60	70	2	8	19	1.24
479971--480017	21	2.2	22	84	3	60	68	2	6	23	1.24
481384--481441	10	5.6	10	82	8	62	68	1	6	22	1.22
481394--481446	11	5.0	11	78	21	51	66	1	5	26	1.25
481384--481429	21	2.2	21	84	7	58	71	0	8	19	1.11
481394--481440	21	2.2	22	84	3	60	68	2	6	23	1.24
481982--482018	10	3.6	10	89	7	56	21	2	5	70	1.20
483516--483563	3	16.3	3	83	12	64	33	0	0	66	0.92
483516--483563	19	2.5	20	90	6	73	33	0	0	66	0.92
484924--484953	13	2.3	13	94	0	51	16	13	3	66	1.37
484966--485003	16	2.4	16	86	4	60	34	0	0	65	0.93
488764--489825	529	2.0	529	100	0	2124	34	22	18	24	1.96
489796--491063	106	12.3	106	87	6	1791	33	24	17	23	1.96
490678--490826	51	3.1	51	64	18	127	32	23	17	26	1.96
489796--491063	521	2.5	517	93	2	2171	33	24	17	23	1.96
490635--490790	43	3.4	43	69	16	134	35	23	17	23	1.95
490835--490990	43	3.4	43	68	13	132	34	25	17	21	1.96
489796--491063	200	6.1	201	84	8	1594	33	24	17	23	1.96
491899--491957	3	20.3	3	83	13	79	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
491900--491957	25	2.4	25	88	8	84	34	0	0	65	0.93
494896--494933	17	2.2	18	85	4	51	26	36	23	13	1.91
499997--500065	23	3.0	23	86	0	102	33	26	24	15	1.95
500520--500561	2	20.5	2	90	4	66	50	4	0	45	1.23
500526--500583	23	2.4	25	83	13	70	51	6	0	41	1.28
501642--501702	24	2.5	24	91	0	104	24	21	27	26	1.99
502463--502588	34	3.4	37	79	13	118	32	0	1	65	1.02
502534--502630	3	30.3	3	79	15	65	31	1	1	65	1.06
502517--502772	4	63.0	4	69	17	61	26	3	1	68	1.15
502465--502658	76	2.6	73	78	13	182	30	0	2	67	1.06
502566--502602	2	19.5	2	83	10	51	43	0	0	56	0.99
502621--502681	13	4.5	14	72	13	56	19	1	1	77	0.95
502621--502772	27	5.7	28	69	18	101	21	5	1	71	1.15
502722--502768	22	2.1	22	84	11	60	21	2	2	74	1.03
505796--505849	21	2.6	21	82	2	65	81	1	12	3	0.91
505793--505849	23	2.6	22	84	13	66	80	3	12	3	0.96
505921--506058	69	2.0	69	85	0	186	37	20	14	27	1.91
506996--507071	32	2.4	32	84	8	102	35	13	14	36	1.85
507675--508008	106	3.2	106	89	0	479	35	23	18	22	1.95
508363--508449	37	2.4	37	86	1	113	26	19	13	40	1.89
508252--508430	87	2.1	87	91	2	288	32	17	12	36	1.87
508339--508578	102	2.4	102	89	0	372	32	17	12	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
508471--508549	37	2.2	36	90	2	122	26	15	13	44	1.84
508616--508717	36	2.8	37	90	3	170	28	22	14	34	1.94
508733--508846	36	3.2	36	80	10	135	26	18	13	42	1.87
508834--508927	39	2.6	36	77	14	102	41	23	6	28	1.79
510090--510143	2	27.5	2	80	10	58	40	1	1	55	1.21
510135--510221	25	3.5	25	74	15	81	24	3	0	72	1.00
510108--510219	50	2.2	52	80	12	135	26	3	0	68	1.11
510244--510293	26	1.9	26	84	8	66	20	8	2	70	1.23
513457--513525	23	3.0	23	86	0	102	33	26	24	15	1.95
515675--515827	64	2.4	64	92	5	249	28	22	18	30	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24